Wall clock time and date at job start Tue Mar 31 2020 05:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47473 * 2 1 4 4 C 1.52996 * 109.47068 * 120.00380 * 2 1 3 5 5 C 1.53003 * 109.47532 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.47017 * 299.99933 * 5 4 2 7 7 C 1.53000 * 109.47030 * 299.99712 * 6 5 4 8 8 C 1.52996 * 109.47301 * 179.97438 * 6 5 4 9 9 N 1.46498 * 109.47059 * 179.97438 * 8 6 5 10 10 C 1.34777 * 119.99828 * 179.72339 * 9 8 6 11 11 O 1.21283 * 120.00222 * 0.28168 * 10 9 8 12 12 C 1.50703 * 120.00290 * 180.27728 * 10 9 8 13 13 C 1.52990 * 109.47398 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47398 * 180.02562 * 13 12 10 15 15 H 1.08001 * 119.99463 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00445 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00506 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99943 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47483 * 89.99798 * 18 16 14 20 20 H 1.48502 * 109.47495 * 210.00312 * 18 16 14 21 21 H 1.48502 * 109.47376 * 329.99929 * 18 16 14 22 22 C 1.53010 * 109.46927 * 59.99585 * 6 5 4 23 23 C 1.52996 * 109.47146 * 300.00115 * 22 6 5 24 24 H 1.08994 * 109.47089 * 299.99846 * 1 2 3 25 25 H 1.09004 * 109.47066 * 59.99770 * 1 2 3 26 26 H 1.09000 * 109.47234 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47675 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.47162 * 300.00171 * 3 2 1 29 29 H 1.09003 * 109.46711 * 59.99763 * 3 2 1 30 30 H 1.09003 * 109.47532 * 60.00149 * 4 2 1 31 31 H 1.09003 * 109.46851 * 300.00074 * 4 2 1 32 32 H 1.08990 * 109.47421 * 179.97438 * 5 4 2 33 33 H 1.09002 * 109.47073 * 59.99223 * 5 4 2 34 34 H 1.08990 * 109.47258 * 299.99903 * 7 6 5 35 35 H 1.09001 * 109.46739 * 60.00141 * 7 6 5 36 36 H 1.08999 * 109.47407 * 179.97438 * 7 6 5 37 37 H 1.09004 * 109.47066 * 60.00027 * 8 6 5 38 38 H 1.08994 * 109.46974 * 300.00175 * 8 6 5 39 39 H 0.97001 * 120.00384 * 0.02562 * 9 8 6 40 40 H 1.08998 * 109.46954 * 300.00581 * 12 10 9 41 41 H 1.09002 * 109.46946 * 59.99717 * 12 10 9 42 42 H 1.08998 * 109.47508 * 300.00200 * 13 12 10 43 43 H 1.09011 * 109.47182 * 60.00188 * 13 12 10 44 44 H 0.97000 * 120.00920 * 179.97438 * 17 16 14 45 45 H 1.09000 * 109.46753 * 60.00569 * 22 6 5 46 46 H 1.09003 * 109.46863 * 179.97438 * 22 6 5 47 47 H 1.08994 * 109.46974 * 299.99940 * 23 22 6 48 48 H 1.09004 * 109.47066 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5700 -0.7208 1.2496 6 6 4.0805 -1.4417 0.0003 7 6 3.5710 -2.8843 -0.0001 8 6 5.6105 -1.4406 0.0004 9 7 6.0993 -2.1314 -1.1955 10 6 7.4245 -2.2488 -1.4115 11 8 8.2123 -1.7872 -0.6133 12 6 7.9274 -2.9539 -2.6448 13 6 9.4573 -2.9486 -2.6473 14 6 9.9602 -3.6531 -3.8809 15 1 9.2586 -4.0640 -4.5918 16 6 11.3157 -3.7741 -4.1014 17 7 11.7546 -4.3885 -5.1782 18 14 12.5291 -3.0654 -2.8706 19 1 12.8553 -4.0927 -1.8492 20 1 13.7702 -2.6583 -3.5772 21 1 11.9266 -1.8814 -2.2069 22 6 3.5705 -0.7203 -1.2490 23 6 2.0405 -0.7208 -1.2493 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7490 1.2491 31 1 1.6766 -0.2075 2.1392 32 1 3.9332 -1.2343 2.1397 33 1 3.9330 0.3070 1.2498 34 1 3.9343 -3.3982 0.8898 35 1 2.4810 -2.8846 -0.0003 36 1 3.9344 -3.3978 -0.8902 37 1 5.9742 -1.9543 0.8904 38 1 5.9731 -0.4128 0.0005 39 1 5.4693 -2.5004 -1.8341 40 1 7.5679 -3.9829 -2.6471 41 1 7.5604 -2.4391 -3.5328 42 1 9.8171 -1.9197 -2.6448 43 1 9.8238 -3.4638 -1.7593 44 1 12.7083 -4.4733 -5.3335 45 1 3.9336 0.3074 -1.2487 46 1 3.9346 -1.2336 -2.1390 47 1 1.6776 -1.7486 -1.2496 48 1 1.6772 -0.2073 -2.1395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412612519.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:52 Heat of formation + Delta-G solvation = -82.870228 kcal Electronic energy + Delta-G solvation = -22857.357305 eV Core-core repulsion = 19717.355578 eV Total energy + Delta-G solvation = -3140.001727 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.69996 -38.99516 -35.99139 -33.44302 -33.08844 -31.23945 -31.12352 -28.66878 -27.92370 -27.07790 -25.85364 -23.91265 -23.11962 -21.14257 -19.99497 -19.61773 -17.85352 -17.23323 -16.15359 -15.75546 -15.49583 -15.24548 -15.16042 -14.50162 -14.33794 -14.09377 -13.99023 -13.67967 -13.06765 -12.85166 -12.69656 -12.53781 -12.34634 -12.26055 -12.12014 -12.07575 -12.00868 -11.55372 -11.39444 -11.36857 -11.08539 -10.96609 -10.92074 -10.36526 -10.24514 -10.13549 -10.11452 -10.01084 -9.75747 -9.19542 -9.12190 -8.77538 -8.48448 -6.00934 -3.99449 3.19872 3.39737 3.46048 3.55561 3.57665 4.26926 4.28949 4.41469 4.53098 4.65792 4.76249 4.83485 5.03245 5.07117 5.13509 5.22827 5.26383 5.34659 5.37076 5.42222 5.46754 5.47142 5.51144 5.61296 5.65225 5.73493 5.74429 5.76115 5.80336 5.83451 5.86486 5.92254 5.93802 6.07778 6.11952 6.13576 6.16858 6.21826 6.32091 6.70513 6.74984 7.40009 7.47086 7.80093 7.86411 8.52943 8.72889 9.02362 9.62338 11.11931 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.038934 B = 0.002951 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.991469 B = 9484.790067 C = 9679.702144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.065 4.065 3 C -0.146 4.146 4 C -0.107 4.107 5 C -0.108 4.108 6 C -0.069 4.069 7 C -0.146 4.146 8 C 0.129 3.871 9 N -0.739 5.739 10 C 0.508 3.492 11 O -0.543 6.543 12 C -0.122 4.122 13 C 0.002 3.998 14 C -0.524 4.524 15 H 0.072 0.928 16 C 0.068 3.932 17 N -0.904 5.904 18 Si 0.877 3.123 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.261 1.261 22 C -0.112 4.112 23 C -0.109 4.109 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.397 0.603 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.023 0.977 43 H 0.018 0.982 44 H 0.263 0.737 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.475 8.483 11.862 29.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.065 4.065 3 C -0.203 4.203 4 C -0.145 4.145 5 C -0.146 4.146 6 C -0.069 4.069 7 C -0.203 4.203 8 C 0.005 3.995 9 N -0.394 5.394 10 C 0.297 3.703 11 O -0.419 6.419 12 C -0.162 4.162 13 C -0.036 4.036 14 C -0.562 4.562 15 H 0.090 0.910 16 C -0.133 4.133 17 N -0.543 5.543 18 Si 0.705 3.295 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.185 1.185 22 C -0.149 4.149 23 C -0.147 4.147 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.232 0.768 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.041 0.959 43 H 0.037 0.963 44 H 0.073 0.927 45 H 0.086 0.914 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -24.723 8.770 12.354 28.996 hybrid contribution 0.394 0.114 0.237 0.473 sum -24.330 8.884 12.590 28.799 Atomic orbital electron populations 1.21866 0.94859 1.01586 1.01573 1.20531 0.94927 0.95602 0.95441 1.21983 1.01706 0.95245 1.01361 1.21612 0.95286 1.00548 0.97032 1.21562 0.95589 1.00716 0.96768 1.20764 0.93844 0.96232 0.96110 1.21978 1.01277 0.94914 1.02106 1.21294 0.92185 0.97413 0.88579 1.46209 1.07602 1.60140 1.25405 1.21510 0.81272 0.79069 0.88489 1.90647 1.55388 1.48278 1.47594 1.21656 1.00946 1.00057 0.93579 1.19360 0.89051 0.97774 0.97434 1.21124 0.92701 1.36337 1.06032 0.90964 1.24972 0.98453 0.94624 0.95232 1.69908 1.14445 1.43226 1.26756 0.86793 0.80507 0.80652 0.81584 1.20259 1.21471 1.18521 1.21650 0.95405 1.00875 0.96994 1.21636 0.95464 1.00542 0.97010 0.92836 0.92771 0.92791 0.91844 0.92909 0.92994 0.91618 0.92133 0.91755 0.91390 0.92541 0.91850 0.92516 0.91931 0.91991 0.76794 0.89754 0.89720 0.95862 0.96317 0.92743 0.91393 0.91765 0.91618 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 8.48 37.16 0.31 -0.53 16 2 C -0.06 -0.43 0.77 -154.51 -0.12 -0.55 16 3 C -0.15 -1.00 7.78 37.16 0.29 -0.71 16 4 C -0.11 -0.72 4.46 -26.73 -0.12 -0.84 16 5 C -0.11 -0.83 4.46 -26.73 -0.12 -0.95 16 6 C -0.07 -0.59 0.53 -154.50 -0.08 -0.67 16 7 C -0.15 -1.17 7.61 37.16 0.28 -0.89 16 8 C 0.13 1.54 4.56 -4.04 -0.02 1.52 16 9 N -0.74 -9.93 4.96 -60.30 -0.30 -10.23 16 10 C 0.51 9.42 7.83 -10.98 -0.09 9.33 16 11 O -0.54 -12.31 15.98 5.55 0.09 -12.22 16 12 C -0.12 -2.41 5.64 -27.89 -0.16 -2.57 16 13 C 0.00 0.04 3.33 -27.89 -0.09 -0.05 16 14 C -0.52 -15.18 9.66 -34.44 -0.33 -15.52 16 15 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 16 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 17 N -0.90 -28.29 13.96 55.43 0.77 -27.52 16 18 Si 0.88 22.88 27.47 -169.99 -4.67 18.21 16 19 H -0.28 -7.11 7.11 56.52 0.40 -6.70 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.26 -6.79 6.54 56.52 0.37 -6.42 16 22 C -0.11 -0.91 4.28 -26.73 -0.11 -1.02 16 23 C -0.11 -0.77 4.46 -26.73 -0.12 -0.89 16 24 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.47 4.80 -51.93 -0.25 0.22 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.44 6.43 -51.93 -0.33 0.10 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.54 6.43 -51.93 -0.33 0.20 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.45 4.81 -51.93 -0.25 0.20 16 36 H 0.06 0.47 6.86 -51.93 -0.36 0.11 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.40 4.32 6.16 -40.82 -0.25 4.07 16 40 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 41 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 42 H 0.02 0.62 7.16 -51.93 -0.37 0.24 16 43 H 0.02 0.49 7.53 -51.92 -0.39 0.10 16 44 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 45 H 0.07 0.60 6.43 -51.93 -0.33 0.26 16 46 H 0.06 0.54 6.86 -51.93 -0.36 0.19 16 47 H 0.07 0.45 6.43 -51.93 -0.33 0.12 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 354.46 15.07 5.34 5.34 Total: -1.00 -33.33 354.46 -7.98 -41.30 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -8.64 Total: -2.52 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -0.57 Total: -12.37 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.47 Total: -37.74 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.09 Total: -12.22 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.67 Total: 18.21 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.33 -7.98 -41.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412612519.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.566 kcal (2) G-P(sol) polarization free energy of solvation -33.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds