Wall clock time and date at job start Tue Mar 31 2020 05:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47175 * 2 1 4 4 C 1.50700 * 109.47119 * 240.00430 * 2 1 3 5 5 H 1.08000 * 119.99846 * 239.99641 * 4 2 1 6 6 C 1.37884 * 120.00208 * 59.99910 * 4 2 1 7 7 N 1.31513 * 119.99550 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00004 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47322 * 59.99911 * 8 6 4 10 10 H 1.48500 * 109.47044 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47294 * 299.99842 * 8 6 4 12 12 C 1.52996 * 109.47362 * 120.00392 * 2 1 3 13 13 N 1.46896 * 109.47024 * 299.99809 * 12 2 1 14 14 C 1.46903 * 111.00254 * 179.97438 * 13 12 2 15 15 H 1.09002 * 113.17665 * 25.33426 * 14 13 12 16 16 C 1.50572 * 114.06097 * 252.73981 * 14 13 12 17 17 H 1.09005 * 113.16075 * 324.22349 * 16 14 13 18 18 C 1.52039 * 123.96492 * 106.43212 * 16 14 13 19 19 C 1.54391 * 105.10461 * 156.90346 * 18 16 14 20 20 C 1.52403 * 112.06625 * 306.17488 * 19 18 16 21 21 O 1.44155 * 112.91551 * 50.02741 * 20 19 18 22 22 C 1.40852 * 109.95321 * 303.35253 * 21 20 19 23 23 H 1.09002 * 111.48087 * 305.63019 * 22 21 20 24 24 C 1.50010 * 127.42756 * 162.74865 * 22 21 20 25 25 C 1.52995 * 114.06716 * 104.84354 * 24 22 21 26 26 C 1.53000 * 114.06248 * 332.48262 * 24 22 21 27 27 H 1.08996 * 109.47252 * 299.99589 * 1 2 3 28 28 H 1.09002 * 109.47573 * 59.99607 * 1 2 3 29 29 H 1.09000 * 109.47429 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47741 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47158 * 300.00118 * 3 2 1 32 32 H 1.09004 * 109.46798 * 60.00418 * 3 2 1 33 33 H 0.97002 * 119.99744 * 180.02562 * 7 6 4 34 34 H 1.09007 * 109.47255 * 180.02562 * 12 2 1 35 35 H 1.09002 * 109.47214 * 60.00045 * 12 2 1 36 36 H 1.00900 * 111.00061 * 303.95567 * 13 12 2 37 37 H 1.08998 * 110.30836 * 275.80347 * 18 16 14 38 38 H 1.08996 * 110.30549 * 38.01190 * 18 16 14 39 39 H 1.09000 * 108.95996 * 66.84130 * 19 18 16 40 40 H 1.08998 * 108.96213 * 185.50495 * 19 18 16 41 41 H 1.09009 * 108.79142 * 170.90843 * 20 19 18 42 42 H 1.08999 * 108.79689 * 289.13708 * 20 19 18 43 43 H 1.08999 * 109.47332 * 154.55167 * 25 24 22 44 44 H 1.08999 * 109.46949 * 274.54987 * 25 24 22 45 45 H 1.09004 * 109.47542 * 34.54817 * 25 24 22 46 46 H 1.08993 * 109.47332 * 325.45527 * 26 24 22 47 47 H 1.09002 * 109.47187 * 85.45414 * 26 24 22 48 48 H 1.09004 * 109.47115 * 205.44703 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9435 0.8304 -2.6034 8 14 2.3212 -1.1201 -4.0080 9 1 1.8257 -2.5200 -4.0079 10 1 1.8258 -0.4203 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 6 2.0399 -0.7213 1.2491 13 7 1.5503 -0.0289 2.4486 14 6 2.0209 -0.6954 3.6702 15 1 2.9432 -1.2576 3.5241 16 6 0.9494 -1.4545 4.4070 17 1 -0.0258 -0.9694 4.3647 18 6 0.8447 -2.9711 4.4280 19 6 0.0434 -3.3015 5.7057 20 6 0.6603 -2.6695 6.9478 21 8 0.9369 -1.2643 6.7841 22 6 1.7788 -1.0664 5.6724 23 1 2.6858 -1.6664 5.7467 24 6 2.0260 0.2149 4.9325 25 6 3.3816 0.8573 5.2329 26 6 0.8607 1.2047 4.9926 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8901 33 1 0.7088 1.1616 -3.4844 34 1 3.1300 -0.7209 1.2493 35 1 1.6766 -1.7490 1.2491 36 1 1.8198 0.9435 2.4401 37 1 0.3126 -3.3259 3.5453 38 1 1.8375 -3.4182 4.4780 39 1 -0.9758 -2.9328 5.5897 40 1 0.0144 -4.3833 5.8358 41 1 -0.0265 -2.7971 7.7846 42 1 1.5917 -3.1863 7.1790 43 1 3.6850 1.4770 4.3891 44 1 3.3005 1.4755 6.1270 45 1 4.1251 0.0773 5.3968 46 1 -0.0815 0.6569 4.9957 47 1 0.9372 1.8012 5.9017 48 1 0.8966 1.8612 4.1232 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414168060.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:05 Heat of formation + Delta-G solvation = -14.194271 kcal Electronic energy + Delta-G solvation = -23975.430763 eV Core-core repulsion = 20838.407049 eV Total energy + Delta-G solvation = -3137.023714 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.38182 -37.39317 -36.10154 -33.54469 -32.75065 -30.52257 -29.97473 -27.48486 -26.27297 -25.53663 -25.19565 -24.34540 -23.08478 -21.35652 -20.25599 -18.80940 -18.34404 -16.44484 -15.86447 -15.68672 -15.17080 -14.89734 -14.56440 -14.41389 -14.11107 -13.58472 -13.30238 -13.12759 -12.90726 -12.37981 -12.31547 -12.10017 -11.97367 -11.87036 -11.74510 -11.56774 -11.14554 -11.05716 -10.98974 -10.77477 -10.65854 -10.57224 -10.38239 -10.25585 -10.13564 -10.02449 -9.97247 -9.35799 -9.12256 -8.76685 -8.60051 -8.26918 -7.66170 -5.89220 -3.99493 3.33396 3.38315 3.40809 3.49216 4.34637 4.45358 4.58128 4.68576 4.82610 4.91617 5.03562 5.09943 5.14111 5.32827 5.36126 5.39299 5.49762 5.57356 5.59515 5.74613 5.78006 5.85657 5.92870 5.97827 6.04670 6.08613 6.10806 6.18034 6.35457 6.37884 6.42632 6.57631 6.64132 6.75213 6.92522 7.10242 7.15674 7.19921 7.41478 7.51188 7.77839 7.79014 7.87117 8.01687 8.24122 8.37315 8.58317 9.01730 9.65258 11.11154 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025531 B = 0.004276 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.437850 B = 6546.442196 C = 7049.720703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.069 3.931 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.050 0.950 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.888 3.112 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.279 1.279 12 C 0.076 3.924 13 N -0.666 5.666 14 C 0.083 3.917 15 H 0.069 0.931 16 C -0.139 4.139 17 H 0.109 0.891 18 C -0.108 4.108 19 C -0.151 4.151 20 C 0.063 3.937 21 O -0.360 6.360 22 C 0.046 3.954 23 H 0.070 0.930 24 C -0.059 4.059 25 C -0.140 4.140 26 C -0.117 4.117 27 H 0.020 0.980 28 H 0.073 0.927 29 H 0.017 0.983 30 H 0.018 0.982 31 H 0.083 0.917 32 H 0.010 0.990 33 H 0.258 0.742 34 H 0.011 0.989 35 H 0.055 0.945 36 H 0.338 0.662 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.045 0.955 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.066 0.934 47 H 0.052 0.948 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.933 -3.419 17.147 17.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.069 3.931 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.068 0.932 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.716 3.284 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.205 1.205 12 C -0.052 4.052 13 N -0.299 5.299 14 C -0.028 4.028 15 H 0.087 0.913 16 C -0.158 4.158 17 H 0.127 0.873 18 C -0.146 4.146 19 C -0.189 4.189 20 C -0.013 4.013 21 O -0.278 6.278 22 C -0.013 4.013 23 H 0.088 0.912 24 C -0.059 4.059 25 C -0.197 4.197 26 C -0.175 4.175 27 H 0.039 0.961 28 H 0.091 0.909 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.101 0.899 32 H 0.029 0.971 33 H 0.068 0.932 34 H 0.030 0.970 35 H 0.073 0.927 36 H 0.159 0.841 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.063 0.937 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.071 0.929 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.164 -3.482 17.124 17.475 hybrid contribution 1.445 -0.666 -1.037 1.899 sum 1.609 -4.148 16.087 16.691 Atomic orbital electron populations 1.21620 0.97400 0.98498 1.00013 1.18080 0.93182 0.91906 0.89972 1.21826 0.97631 0.99220 1.00240 1.21071 1.31088 1.11814 0.90535 0.93168 1.24876 0.95049 0.94969 0.98628 1.69825 1.36771 1.22770 1.22962 0.86738 0.79076 0.79852 0.82733 1.20448 1.21373 1.20510 1.22177 0.95251 0.97842 0.89920 1.60725 1.62472 1.06144 1.00512 1.22652 0.95828 0.95224 0.89091 0.91333 1.23445 1.00200 0.95091 0.97108 0.87306 1.21546 0.99891 0.96025 0.97114 1.22122 1.00724 1.00590 0.95427 1.22491 0.99558 0.81839 0.97435 1.87903 1.67038 1.23681 1.49195 1.23265 0.93705 0.98888 0.85430 0.91188 1.21903 0.96443 0.93437 0.94161 1.21785 0.95450 1.00712 1.01733 1.21458 0.96610 0.98013 1.01374 0.96092 0.90861 0.96412 0.96304 0.89869 0.97083 0.93174 0.97047 0.92678 0.84103 0.91179 0.92199 0.91315 0.91179 0.89321 0.93707 0.92017 0.92348 0.92723 0.91527 0.92881 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.86 8.09 37.15 0.30 -2.56 16 2 C 0.07 1.66 0.57 -155.67 -0.09 1.57 16 3 C -0.13 -3.07 7.92 37.16 0.29 -2.78 16 4 C -0.51 -13.59 8.01 -34.44 -0.28 -13.87 16 5 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 6 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 7 N -0.88 -24.46 9.35 55.43 0.52 -23.94 16 8 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.08 1.58 4.45 -3.83 -0.02 1.56 16 13 N -0.67 -11.56 5.28 -110.44 -0.58 -12.14 16 14 C 0.08 1.21 3.34 -71.17 -0.24 0.98 16 15 H 0.07 1.03 7.86 -51.93 -0.41 0.62 16 16 C -0.14 -1.92 3.01 -93.70 -0.28 -2.20 16 17 H 0.11 1.67 6.23 -51.93 -0.32 1.35 16 18 C -0.11 -1.34 6.20 -26.49 -0.16 -1.51 16 19 C -0.15 -1.56 5.95 -26.31 -0.16 -1.71 16 20 C 0.06 0.65 6.67 36.85 0.25 0.90 16 21 O -0.36 -4.72 10.93 -34.62 -0.38 -5.10 16 22 C 0.05 0.58 3.08 -30.15 -0.09 0.49 16 23 H 0.07 0.87 7.67 -51.93 -0.40 0.47 16 24 C -0.06 -0.75 1.29 -157.68 -0.20 -0.95 16 25 C -0.14 -1.59 9.30 37.16 0.35 -1.24 16 26 C -0.12 -1.51 8.61 37.16 0.32 -1.19 16 27 H 0.02 0.46 7.60 -51.93 -0.39 0.07 16 28 H 0.07 1.96 6.07 -51.93 -0.32 1.64 16 29 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 32 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 33 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.01 0.24 8.13 -51.93 -0.42 -0.19 16 35 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.34 5.85 5.78 -39.29 -0.23 5.62 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.71 8.04 -51.93 -0.42 0.29 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.76 8.14 -51.92 -0.42 0.34 16 42 H 0.04 0.42 8.13 -51.93 -0.42 0.00 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.58 7.89 -51.93 -0.41 0.17 16 46 H 0.07 0.91 6.19 -51.93 -0.32 0.59 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.06 0.86 7.23 -51.93 -0.38 0.48 16 LS Contribution 354.99 15.07 5.35 5.35 Total: -1.00 -27.21 354.99 -9.08 -36.29 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -8.86 Total: 4.27 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -0.10 Total: -20.83 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: -0.07 Total: -36.08 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.38 Total: -5.10 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -27.21 -9.08 -36.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414168060.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.091 kcal (2) G-P(sol) polarization free energy of solvation -27.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds