Wall clock time and date at job start Tue Mar 31 2020 05:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47084 * 2 1 4 4 C 1.50699 * 109.47245 * 239.99937 * 2 1 3 5 5 H 1.08007 * 119.99707 * 237.77071 * 4 2 1 6 6 C 1.37872 * 120.00097 * 57.76820 * 4 2 1 7 7 N 1.31516 * 120.00049 * 6.80241 * 6 4 2 8 8 Si 1.86800 * 119.99989 * 186.79519 * 6 4 2 9 9 H 1.48507 * 109.46971 * 95.00044 * 8 6 4 10 10 H 1.48504 * 109.47188 * 214.99453 * 8 6 4 11 11 H 1.48498 * 109.47546 * 334.99657 * 8 6 4 12 12 C 1.53002 * 109.47262 * 119.99850 * 2 1 3 13 13 N 1.46899 * 109.47093 * 303.30964 * 12 2 1 14 14 C 1.46904 * 110.99924 * 185.69055 * 13 12 2 15 15 H 1.08992 * 112.99057 * 320.78794 * 14 13 12 16 16 C 1.53351 * 113.70882 * 189.21912 * 14 13 12 17 17 H 1.09007 * 111.94415 * 159.24374 * 16 14 13 18 18 C 1.51031 * 115.03434 * 30.45331 * 16 14 13 19 19 C 1.50840 * 114.03579 * 289.96859 * 18 16 14 20 20 C 1.52670 * 110.50992 * 315.21110 * 19 18 16 21 21 O 1.42848 * 108.92071 * 61.29015 * 20 19 18 22 22 C 1.42848 * 113.84030 * 295.60768 * 21 20 19 23 23 H 1.09000 * 113.71692 * 275.67707 * 22 21 20 24 24 C 1.53909 * 113.71117 * 92.35508 * 14 13 12 25 25 C 1.52994 * 113.65243 * 202.71824 * 24 14 13 26 26 C 1.53008 * 113.65095 * 333.74037 * 24 14 13 27 27 H 1.08999 * 109.47484 * 304.88525 * 1 2 3 28 28 H 1.08998 * 109.47317 * 64.89087 * 1 2 3 29 29 H 1.09007 * 109.47123 * 184.88660 * 1 2 3 30 30 H 1.09000 * 109.46759 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47061 * 299.99441 * 3 2 1 32 32 H 1.08999 * 109.46716 * 60.00158 * 3 2 1 33 33 H 0.96997 * 120.00077 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47769 * 183.30942 * 12 2 1 35 35 H 1.09002 * 109.46956 * 63.30768 * 12 2 1 36 36 H 1.00902 * 111.00245 * 61.73764 * 13 12 2 37 37 H 1.09010 * 108.69011 * 50.52026 * 18 16 14 38 38 H 1.08997 * 108.69835 * 168.48285 * 18 16 14 39 39 H 1.09005 * 109.34911 * 194.95896 * 19 18 16 40 40 H 1.08993 * 109.33466 * 75.46566 * 19 18 16 41 41 H 1.08999 * 109.56548 * 301.45517 * 20 19 18 42 42 H 1.09006 * 109.56213 * 181.11505 * 20 19 18 43 43 H 1.09008 * 109.47178 * 59.99964 * 25 24 14 44 44 H 1.09003 * 109.47459 * 179.97438 * 25 24 14 45 45 H 1.08998 * 109.47104 * 300.00213 * 25 24 14 46 46 H 1.08996 * 109.46970 * 59.99844 * 26 24 14 47 47 H 1.08998 * 109.46805 * 180.02562 * 26 24 14 48 48 H 1.08996 * 109.46692 * 299.99852 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6826 -1.5671 -1.1317 6 6 1.6617 -0.2669 -2.4822 7 7 0.9817 0.8517 -2.6088 8 14 2.1257 -1.2546 -3.9983 9 1 0.9995 -2.1482 -4.3705 10 1 2.4153 -0.3288 -5.1227 11 1 3.3308 -2.0719 -3.7070 12 6 2.0400 -0.7212 1.2493 13 7 1.4862 -0.0764 2.4473 14 6 2.0593 -0.6558 3.6696 15 1 2.1890 -1.7362 3.6082 16 6 1.3671 -0.1898 4.9562 17 1 1.5450 -0.8745 5.7855 18 6 -0.1001 0.1376 4.8100 19 6 -0.3741 1.3877 4.0116 20 6 0.5641 2.5130 4.4411 21 8 1.9125 2.1121 4.1927 22 6 2.3347 0.9919 4.9721 23 1 2.6896 1.2591 5.9675 24 6 3.3046 0.0890 4.1826 25 6 4.2084 -0.7666 5.0724 26 6 4.0741 0.8268 3.0851 27 1 -0.3634 0.5877 0.8430 28 1 -0.3634 0.4361 -0.9305 29 1 -0.3634 -1.0240 0.0875 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 0.7213 1.1640 -3.4894 34 1 3.1284 -0.6702 1.2795 35 1 1.7259 -1.7646 1.2201 36 1 0.4789 -0.1356 2.4570 37 1 -0.5961 -0.6958 4.3122 38 1 -0.5326 0.2549 5.8036 39 1 -1.4060 1.6999 4.1723 40 1 -0.2236 1.1796 2.9524 41 1 0.4325 2.7120 5.5046 42 1 0.3399 3.4134 3.8691 43 1 4.5567 -1.6331 4.5102 44 1 5.0652 -0.1753 5.3956 45 1 3.6475 -1.1013 5.9450 46 1 3.4227 1.5658 2.6186 47 1 4.9384 1.3275 3.5212 48 1 4.4095 0.1122 2.3335 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414168062.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:08 Heat of formation + Delta-G solvation = -21.968430 kcal Electronic energy + Delta-G solvation = -24972.820622 eV Core-core repulsion = 21835.459795 eV Total energy + Delta-G solvation = -3137.360827 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.04105 -36.68967 -35.84283 -33.83644 -32.53051 -30.44004 -29.83227 -27.05848 -25.79403 -25.48586 -25.11707 -24.40706 -23.56173 -21.92374 -19.26040 -18.38961 -18.05713 -16.34694 -15.79977 -15.55660 -15.36689 -14.98362 -14.61953 -14.12105 -13.80557 -13.51626 -13.09048 -12.81717 -12.69593 -12.46759 -12.38832 -11.99191 -11.87937 -11.69192 -11.40961 -11.12062 -11.05483 -10.93792 -10.79249 -10.70918 -10.54428 -10.48772 -10.19236 -10.11919 -9.93708 -9.89564 -9.37826 -9.29704 -9.05356 -8.79587 -8.55143 -8.20265 -7.46911 -5.85765 -3.95215 3.33726 3.41309 3.44294 3.99565 4.43609 4.52544 4.72979 4.74094 4.97897 5.04824 5.14135 5.28303 5.37548 5.39022 5.52191 5.53681 5.66014 5.79221 5.82746 5.87707 5.93537 5.98459 6.08668 6.15399 6.22998 6.28603 6.35554 6.38776 6.49514 6.51035 6.64183 6.78270 6.88060 6.95657 7.18178 7.22652 7.27260 7.54174 7.61879 7.64671 7.83175 7.86241 7.95214 8.09732 8.28797 8.46831 8.64854 9.06710 9.69137 11.14109 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023572 B = 0.005451 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.582617 B = 5135.599759 C = 5584.710798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.074 3.926 3 C -0.116 4.116 4 C -0.506 4.506 5 H 0.050 0.950 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.884 3.116 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.073 3.927 13 N -0.651 5.651 14 C 0.079 3.921 15 H 0.041 0.959 16 C -0.138 4.138 17 H 0.089 0.911 18 C -0.103 4.103 19 C -0.162 4.162 20 C 0.071 3.929 21 O -0.334 6.334 22 C 0.090 3.910 23 H 0.061 0.939 24 C -0.077 4.077 25 C -0.127 4.127 26 C -0.121 4.121 27 H 0.013 0.987 28 H 0.079 0.921 29 H 0.014 0.986 30 H 0.015 0.985 31 H 0.073 0.927 32 H 0.023 0.977 33 H 0.257 0.743 34 H 0.060 0.940 35 H 0.006 0.994 36 H 0.337 0.663 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.098 0.902 41 H 0.036 0.964 42 H 0.090 0.910 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.090 0.910 47 H 0.034 0.966 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.207 0.059 16.472 16.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.073 3.927 3 C -0.174 4.174 4 C -0.544 4.544 5 H 0.068 0.932 6 C -0.135 4.135 7 N -0.521 5.521 8 Si 0.713 3.287 9 H -0.210 1.210 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.055 4.055 13 N -0.285 5.285 14 C -0.032 4.032 15 H 0.058 0.942 16 C -0.157 4.157 17 H 0.107 0.893 18 C -0.141 4.141 19 C -0.200 4.200 20 C -0.006 4.006 21 O -0.252 6.252 22 C 0.032 3.968 23 H 0.078 0.922 24 C -0.078 4.078 25 C -0.184 4.184 26 C -0.178 4.178 27 H 0.032 0.968 28 H 0.098 0.902 29 H 0.033 0.967 30 H 0.034 0.966 31 H 0.092 0.908 32 H 0.042 0.958 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.024 0.976 36 H 0.160 0.840 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.116 0.884 41 H 0.054 0.946 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.109 0.891 47 H 0.053 0.947 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.255 0.778 16.155 16.176 hybrid contribution -0.447 -1.769 -0.614 1.926 sum -0.193 -0.992 15.541 15.574 Atomic orbital electron populations 1.21805 0.98905 0.97314 1.00875 1.18024 0.91747 0.93180 0.89730 1.21649 0.97596 0.98040 1.00135 1.21153 1.29328 1.13314 0.90654 0.93169 1.24862 0.95372 0.94727 0.98519 1.69862 1.39441 1.20102 1.22743 0.86709 0.78608 0.80143 0.83247 1.20987 1.21381 1.20106 1.22278 0.99027 0.94192 0.90033 1.60618 1.10360 1.57799 0.99769 1.22578 0.95161 0.95014 0.90402 0.94151 1.22504 0.94954 0.99270 0.98945 0.89295 1.20391 0.95236 0.98494 0.99945 1.21843 0.99088 0.95754 1.03275 1.22246 0.82910 0.96862 0.98617 1.88037 1.27293 1.46209 1.63690 1.22771 0.94993 0.85934 0.93137 0.92159 1.22109 0.94042 0.95390 0.96235 1.21573 0.98834 0.99383 0.98635 1.21512 0.98677 1.00683 0.96887 0.96774 0.90232 0.96681 0.96550 0.90837 0.95791 0.93314 0.92149 0.97572 0.83957 0.92202 0.92809 0.91893 0.88381 0.94606 0.89210 0.92162 0.92348 0.92954 0.89110 0.94709 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 7.72 37.16 0.29 -2.80 16 2 C 0.07 1.78 0.57 -155.66 -0.09 1.69 16 3 C -0.12 -2.85 8.14 37.16 0.30 -2.55 16 4 C -0.51 -13.72 8.01 -34.44 -0.28 -14.00 16 5 H 0.05 1.37 7.75 -52.48 -0.41 0.97 16 6 C 0.07 1.80 5.10 -17.82 -0.09 1.71 16 7 N -0.88 -24.62 9.39 55.43 0.52 -24.10 16 8 Si 0.88 21.33 29.54 -169.99 -5.02 16.31 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.07 1.52 4.23 -3.82 -0.02 1.51 16 13 N -0.65 -11.36 2.97 -106.03 -0.31 -11.68 16 14 C 0.08 1.19 3.46 -67.05 -0.23 0.96 16 15 H 0.04 0.63 8.02 -51.93 -0.42 0.21 16 16 C -0.14 -1.73 3.55 -91.58 -0.33 -2.06 16 17 H 0.09 0.98 7.37 -51.92 -0.38 0.59 16 18 C -0.10 -1.23 4.92 -28.80 -0.14 -1.37 16 19 C -0.16 -2.07 5.50 -27.98 -0.15 -2.22 16 20 C 0.07 0.91 6.78 36.99 0.25 1.17 16 21 O -0.33 -5.18 8.20 -35.23 -0.29 -5.47 16 22 C 0.09 1.22 4.24 -26.21 -0.11 1.11 16 23 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 24 C -0.08 -1.08 1.35 -153.40 -0.21 -1.29 16 25 C -0.13 -1.45 9.09 37.15 0.34 -1.11 16 26 C -0.12 -1.97 7.84 37.16 0.29 -1.68 16 27 H 0.01 0.29 6.35 -51.93 -0.33 -0.04 16 28 H 0.08 2.09 6.04 -51.93 -0.31 1.78 16 29 H 0.01 0.33 8.14 -51.92 -0.42 -0.09 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 1.99 6.00 -51.93 -0.31 1.68 16 32 H 0.02 0.54 7.70 -51.93 -0.40 0.14 16 33 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.06 1.30 5.83 -51.93 -0.30 1.00 16 35 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 36 H 0.34 5.87 3.73 -39.29 -0.15 5.72 16 37 H 0.06 0.73 7.94 -51.92 -0.41 0.32 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.10 1.52 4.65 -51.93 -0.24 1.27 16 41 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.05 0.52 7.13 -51.93 -0.37 0.15 16 46 H 0.09 1.72 6.47 -51.93 -0.34 1.38 16 47 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.05 0.88 6.41 -51.93 -0.33 0.55 16 LS Contribution 341.18 15.07 5.14 5.14 Total: -1.00 -27.42 341.18 -8.62 -36.05 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -8.49 Total: 4.69 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: -0.17 Total: -20.94 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.21 Total: -35.77 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -0.29 Total: -5.47 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.42 -8.62 -36.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414168062.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.078 kcal (2) G-P(sol) polarization free energy of solvation -27.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds