Wall clock time and date at job start Tue Mar 31 2020 05:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47281 * 2 1 4 4 C 1.50701 * 109.47355 * 239.99779 * 2 1 3 5 5 H 1.08003 * 119.99882 * 236.86198 * 4 2 1 6 6 C 1.37871 * 119.99853 * 56.85976 * 4 2 1 7 7 N 1.31519 * 120.00165 * 5.82098 * 6 4 2 8 8 Si 1.86797 * 119.99829 * 185.82609 * 6 4 2 9 9 H 1.48503 * 109.47362 * 85.02495 * 8 6 4 10 10 H 1.48504 * 109.47293 * 205.02675 * 8 6 4 11 11 H 1.48499 * 109.47047 * 325.02207 * 8 6 4 12 12 C 1.53003 * 109.46975 * 119.99699 * 2 1 3 13 13 N 1.46904 * 109.47162 * 300.00163 * 12 2 1 14 14 C 1.46901 * 110.99925 * 179.97438 * 13 12 2 15 15 H 1.09001 * 113.17810 * 28.09482 * 14 13 12 16 16 C 1.50571 * 114.06069 * 255.49708 * 14 13 12 17 17 H 1.09003 * 113.16468 * 167.77234 * 16 14 13 18 18 C 1.52039 * 123.95946 * 25.56788 * 16 14 13 19 19 C 1.54398 * 105.23712 * 202.83487 * 18 16 14 20 20 C 1.52754 * 111.87676 * 53.74817 * 19 18 16 21 21 O 1.44152 * 112.99602 * 310.07521 * 20 19 18 22 22 C 1.40848 * 109.95571 * 56.64145 * 21 20 19 23 23 H 1.09001 * 111.06290 * 54.12815 * 22 21 20 24 24 C 1.50184 * 127.54696 * 197.27429 * 22 21 20 25 25 C 1.52998 * 113.88898 * 27.32280 * 24 22 21 26 26 C 1.53002 * 114.31725 * 255.05551 * 24 22 21 27 27 H 1.08997 * 109.47623 * 293.83286 * 1 2 3 28 28 H 1.08994 * 109.46970 * 53.83573 * 1 2 3 29 29 H 1.09004 * 109.47331 * 173.83528 * 1 2 3 30 30 H 1.08992 * 109.47191 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47097 * 300.00105 * 3 2 1 32 32 H 1.09006 * 109.47378 * 59.99463 * 3 2 1 33 33 H 0.96992 * 119.99959 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.47288 * 180.02562 * 12 2 1 35 35 H 1.09000 * 109.47337 * 60.00111 * 12 2 1 36 36 H 1.00904 * 110.99669 * 303.95268 * 13 12 2 37 37 H 1.08999 * 110.30989 * 321.79970 * 18 16 14 38 38 H 1.08994 * 110.30984 * 83.86500 * 18 16 14 39 39 H 1.08994 * 108.96217 * 174.57115 * 19 18 16 40 40 H 1.09000 * 108.95716 * 293.23624 * 19 18 16 41 41 H 1.09000 * 108.75141 * 189.16629 * 20 19 18 42 42 H 1.08998 * 108.65916 * 70.92017 * 20 19 18 43 43 H 1.08998 * 109.47206 * 154.57328 * 25 24 22 44 44 H 1.08998 * 109.47294 * 274.57908 * 25 24 22 45 45 H 1.09003 * 109.47106 * 34.58279 * 25 24 22 46 46 H 1.08996 * 109.47210 * 325.21550 * 26 24 22 47 47 H 1.09000 * 109.46671 * 85.21965 * 26 24 22 48 48 H 1.08997 * 109.46950 * 205.21058 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6945 -1.5581 -1.1321 6 6 1.6468 -0.2784 -2.4816 7 7 0.9349 0.8203 -2.6075 8 14 2.1353 -1.2536 -3.9981 9 1 1.1495 -2.3406 -4.2264 10 1 2.1615 -0.3531 -5.1786 11 1 3.4833 -1.8425 -3.7948 12 6 2.0400 -0.7212 1.2493 13 7 1.5502 -0.0287 2.4487 14 6 2.0207 -0.6951 3.6704 15 1 2.9678 -1.2177 3.5364 16 6 0.9650 -1.5079 4.3718 17 1 1.3697 -2.1601 5.1457 18 6 -0.2441 -2.1118 3.6753 19 6 -1.2934 -2.3172 4.7891 20 6 -1.5562 -1.0296 5.5679 21 8 -0.3470 -0.3866 6.0176 22 6 0.4943 -0.1228 4.9192 23 1 -0.0307 0.4454 4.1513 24 6 1.9620 0.1947 4.9459 25 6 2.7009 -0.3919 6.1504 26 6 2.2927 1.6673 4.6951 27 1 -0.3634 0.4152 0.9400 28 1 -0.3633 0.6064 -0.8296 29 1 -0.3634 -1.0217 -0.1104 30 1 3.1299 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 0.6633 1.1240 -3.4877 34 1 3.1300 -0.7208 1.2496 35 1 1.6766 -1.7489 1.2494 36 1 1.8197 0.9437 2.4402 37 1 -0.6255 -1.4270 2.9179 38 1 0.0187 -3.0677 3.2222 39 1 -2.2250 -2.6601 4.3392 40 1 -0.9330 -3.0804 5.4788 41 1 -2.1726 -1.2645 6.4356 42 1 -2.1031 -0.3392 4.9258 43 1 3.7534 -0.5261 5.9008 44 1 2.6122 0.2882 6.9976 45 1 2.2636 -1.3558 6.4108 46 1 1.5819 2.0828 3.9808 47 1 2.2296 2.2187 5.6332 48 1 3.3024 1.7494 4.2927 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414168063.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:10 Heat of formation + Delta-G solvation = -10.711403 kcal Electronic energy + Delta-G solvation = -24316.863514 eV Core-core repulsion = 21179.990829 eV Total energy + Delta-G solvation = -3136.872685 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.35469 -37.28533 -36.08789 -33.40616 -32.68584 -30.58186 -29.81891 -27.45021 -26.16775 -25.56594 -25.20511 -24.05858 -23.35050 -21.66150 -19.95341 -18.50582 -18.40976 -16.16565 -15.94913 -15.77473 -15.33109 -14.76348 -14.51471 -14.27788 -13.87591 -13.57905 -13.31465 -13.00767 -12.84332 -12.46793 -12.19881 -12.09635 -12.02555 -11.89180 -11.78533 -11.41979 -11.22316 -11.04355 -10.88190 -10.79546 -10.64071 -10.54025 -10.31811 -10.16647 -10.10053 -9.99300 -9.87299 -9.38556 -9.08934 -8.68287 -8.63781 -8.27849 -7.70825 -5.92478 -4.01257 3.31544 3.38142 3.40609 3.65924 4.27461 4.45343 4.68441 4.72602 4.95542 5.03987 5.13466 5.15451 5.28542 5.33818 5.42320 5.55625 5.62066 5.72562 5.74576 5.79266 5.86563 5.96244 5.99414 6.02550 6.05839 6.14863 6.16932 6.26609 6.33159 6.41922 6.44987 6.61341 6.71950 6.72247 6.89722 7.06279 7.16713 7.34157 7.34416 7.46050 7.73684 7.74708 7.82794 7.95151 8.20126 8.31785 8.55100 8.99823 9.63465 11.08790 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023895 B = 0.004704 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.513369 B = 5950.704704 C = 6411.610062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.070 3.930 3 C -0.132 4.132 4 C -0.507 4.507 5 H 0.051 0.949 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.887 3.113 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.078 3.922 13 N -0.665 5.665 14 C 0.085 3.915 15 H 0.056 0.944 16 C -0.153 4.153 17 H 0.091 0.909 18 C -0.099 4.099 19 C -0.151 4.151 20 C 0.066 3.934 21 O -0.370 6.370 22 C 0.061 3.939 23 H 0.094 0.906 24 C -0.064 4.064 25 C -0.125 4.125 26 C -0.143 4.143 27 H 0.021 0.979 28 H 0.069 0.931 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.083 0.917 32 H 0.009 0.991 33 H 0.258 0.742 34 H 0.013 0.987 35 H 0.057 0.943 36 H 0.341 0.659 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.085 0.915 42 H 0.048 0.952 43 H 0.055 0.945 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.057 0.943 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.097 -1.761 15.675 15.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.069 3.931 3 C -0.190 4.190 4 C -0.546 4.546 5 H 0.069 0.931 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.715 3.285 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.202 1.202 12 C -0.050 4.050 13 N -0.299 5.299 14 C -0.026 4.026 15 H 0.074 0.926 16 C -0.172 4.172 17 H 0.109 0.891 18 C -0.137 4.137 19 C -0.189 4.189 20 C -0.011 4.011 21 O -0.289 6.289 22 C 0.003 3.997 23 H 0.111 0.889 24 C -0.064 4.064 25 C -0.182 4.182 26 C -0.200 4.200 27 H 0.040 0.960 28 H 0.088 0.912 29 H 0.039 0.961 30 H 0.038 0.962 31 H 0.102 0.898 32 H 0.028 0.972 33 H 0.068 0.932 34 H 0.032 0.968 35 H 0.075 0.925 36 H 0.163 0.837 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.103 0.897 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.759 -1.914 15.715 15.929 hybrid contribution 1.113 -0.506 -1.157 1.684 sum -0.646 -2.420 14.558 14.772 Atomic orbital electron populations 1.21618 0.97420 0.99211 0.99238 1.18083 0.93115 0.91891 0.89988 1.21855 0.97749 0.99197 1.00156 1.21079 1.28827 1.14180 0.90526 0.93062 1.24868 0.95181 0.94766 0.98612 1.69850 1.38054 1.21381 1.22972 0.86700 0.78847 0.80072 0.82852 1.20731 1.21409 1.20193 1.22172 0.95452 0.97894 0.89457 1.60574 1.62634 1.06427 1.00272 1.22196 0.95921 0.95139 0.89369 0.92614 1.23275 0.96800 0.97383 0.99791 0.89063 1.21407 0.94015 1.01293 0.96964 1.22197 1.00239 0.97976 0.98450 1.22504 0.86328 0.93534 0.98739 1.87834 1.30718 1.78435 1.31932 1.23476 0.91253 0.97132 0.87797 0.88864 1.21991 0.92833 0.95729 0.95889 1.21584 0.99430 1.01133 0.96051 1.21756 1.01831 0.94498 1.01905 0.96007 0.91211 0.96146 0.96219 0.89822 0.97237 0.93208 0.96849 0.92463 0.83686 0.89737 0.92419 0.91194 0.92170 0.89708 0.93340 0.92554 0.92201 0.91788 0.91564 0.92370 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.77 8.05 37.16 0.30 -2.47 16 2 C 0.07 1.64 0.57 -155.66 -0.09 1.55 16 3 C -0.13 -3.04 7.95 37.16 0.30 -2.75 16 4 C -0.51 -13.47 8.01 -34.44 -0.28 -13.75 16 5 H 0.05 1.37 7.75 -52.48 -0.41 0.96 16 6 C 0.07 1.80 5.13 -17.82 -0.09 1.70 16 7 N -0.88 -24.24 9.46 55.43 0.52 -23.72 16 8 Si 0.89 21.02 29.54 -169.99 -5.02 15.99 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 12 C 0.08 1.59 4.46 -3.82 -0.02 1.57 16 13 N -0.67 -11.23 4.15 -110.00 -0.46 -11.69 16 14 C 0.08 1.24 3.81 -70.78 -0.27 0.97 16 15 H 0.06 0.85 7.93 -51.93 -0.41 0.44 16 16 C -0.15 -2.14 3.15 -93.70 -0.29 -2.43 16 17 H 0.09 1.23 6.23 -51.93 -0.32 0.91 16 18 C -0.10 -1.40 5.98 -26.49 -0.16 -1.56 16 19 C -0.15 -1.77 5.98 -26.12 -0.16 -1.93 16 20 C 0.07 0.78 6.67 37.03 0.25 1.03 16 21 O -0.37 -5.25 10.93 -34.61 -0.38 -5.63 16 22 C 0.06 0.86 3.03 -29.67 -0.09 0.77 16 23 H 0.09 1.46 7.00 -51.93 -0.36 1.10 16 24 C -0.06 -0.82 1.45 -157.60 -0.23 -1.05 16 25 C -0.12 -1.41 9.01 37.16 0.33 -1.07 16 26 C -0.14 -1.72 8.43 37.16 0.31 -1.41 16 27 H 0.02 0.46 7.42 -51.93 -0.39 0.08 16 28 H 0.07 1.82 6.25 -51.93 -0.32 1.49 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 2.16 6.11 -51.93 -0.32 1.84 16 32 H 0.01 0.18 6.57 -51.93 -0.34 -0.16 16 33 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 34 H 0.01 0.28 8.13 -51.93 -0.42 -0.15 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.34 5.74 4.64 -39.29 -0.18 5.56 16 37 H 0.08 1.37 7.71 -51.93 -0.40 0.97 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.05 0.58 8.12 -51.93 -0.42 0.16 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.74 6.19 -51.93 -0.32 0.42 16 46 H 0.07 0.85 6.85 -51.93 -0.36 0.49 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 351.83 15.07 5.30 5.30 Total: -1.00 -26.68 351.83 -8.97 -35.65 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -8.76 Total: 4.91 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -0.18 Total: -20.83 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 0.07 Total: -35.41 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -0.38 Total: -5.63 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -26.68 -8.97 -35.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414168063.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.939 kcal (2) G-P(sol) polarization free energy of solvation -26.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds