Wall clock time and date at job start Tue Mar 31 2020 06:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34780 * 120.00613 * 2 1 4 4 O 1.21276 * 119.99930 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99729 * 359.97438 * 3 2 1 6 6 C 1.52993 * 109.47146 * 180.02562 * 5 3 2 7 7 C 1.50701 * 109.47146 * 180.02562 * 6 5 3 8 8 H 1.08005 * 120.00031 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00102 * 179.72161 * 7 6 5 10 10 N 1.31512 * 119.99585 * 0.27759 * 9 7 6 11 11 Si 1.86800 * 119.99967 * 180.27591 * 9 7 6 12 12 H 1.48502 * 109.47348 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47128 * 120.00368 * 11 9 7 14 14 H 1.48503 * 109.46864 * 240.00066 * 11 9 7 15 15 C 1.46508 * 119.99622 * 179.97438 * 2 1 3 16 16 H 1.08998 * 110.01420 * 162.39063 * 15 2 1 17 17 C 1.54258 * 110.03074 * 40.94561 * 15 2 1 18 18 C 1.54895 * 104.19364 * 217.10237 * 17 15 2 19 19 C 1.54890 * 102.74779 * 37.94607 * 18 17 15 20 20 C 1.53878 * 110.03294 * 283.77492 * 15 2 1 21 21 H 1.08990 * 110.03522 * 238.56942 * 20 15 2 22 22 C 1.53000 * 110.03017 * 359.95647 * 20 15 2 23 23 C 1.52999 * 109.47459 * 82.14004 * 22 20 15 24 24 C 1.53004 * 109.46862 * 202.13924 * 22 20 15 25 25 C 1.53001 * 109.47196 * 322.13382 * 22 20 15 26 26 H 1.09007 * 109.46841 * 64.14666 * 1 2 3 27 27 H 1.08990 * 109.47557 * 184.14884 * 1 2 3 28 28 H 1.09002 * 109.47236 * 304.15693 * 1 2 3 29 29 H 1.09007 * 109.46979 * 59.99588 * 5 3 2 30 30 H 1.08997 * 109.46833 * 300.00549 * 5 3 2 31 31 H 1.08995 * 109.47363 * 59.99813 * 6 5 3 32 32 H 1.09002 * 109.47051 * 299.99919 * 6 5 3 33 33 H 0.97002 * 119.99371 * 179.97438 * 10 9 7 34 34 H 1.08996 * 110.49366 * 335.78064 * 17 15 2 35 35 H 1.09005 * 110.48769 * 98.42696 * 17 15 2 36 36 H 1.08994 * 110.75848 * 279.62863 * 18 17 15 37 37 H 1.09000 * 110.91439 * 156.33080 * 18 17 15 38 38 H 1.08992 * 110.48259 * 203.37789 * 19 18 17 39 39 H 1.08996 * 110.48652 * 80.73327 * 19 18 17 40 40 H 1.08996 * 109.47444 * 116.83723 * 23 22 20 41 41 H 1.09004 * 109.46977 * 236.83579 * 23 22 20 42 42 H 1.09000 * 109.47023 * 356.83200 * 23 22 20 43 43 H 1.09003 * 109.47312 * 59.99513 * 24 22 20 44 44 H 1.08999 * 109.47033 * 179.97438 * 24 22 20 45 45 H 1.09001 * 109.46894 * 299.99741 * 24 22 20 46 46 H 1.09004 * 109.46794 * 85.88580 * 25 22 20 47 47 H 1.09002 * 109.47190 * 205.88532 * 25 22 20 48 48 H 1.08996 * 109.47457 * 325.88499 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3517 1.1670 0.0005 5 6 1.3856 2.4723 -0.0006 6 6 2.3798 3.6351 -0.0011 7 6 1.6264 4.9403 -0.0011 8 1 0.5463 4.9403 -0.0003 9 6 2.3158 6.1343 0.0043 10 7 3.6309 6.1342 0.0039 11 14 1.3819 7.7520 0.0122 12 1 -0.0782 7.4808 0.0107 13 1 1.7411 8.5251 1.2282 14 1 1.7403 8.5364 -1.1968 15 6 2.1974 -1.2688 0.0006 16 1 3.2293 -1.1040 -0.3093 17 6 1.5135 -2.2741 -0.9487 18 6 1.6619 -3.6376 -0.2289 19 6 1.4590 -3.2619 1.2600 20 6 2.1628 -1.8968 1.4049 21 1 3.1779 -2.0376 1.7761 22 6 1.3753 -0.9990 2.3612 23 6 -0.1221 -1.2649 2.1938 24 6 1.7891 -1.3023 3.8027 25 6 1.6714 0.4681 2.0437 26 1 -0.3633 0.4482 -0.9249 27 1 -0.3634 -1.0249 0.0743 28 1 -0.3634 0.5770 0.8504 29 1 0.7585 2.5302 0.8892 30 1 0.7592 2.5298 -0.8908 31 1 3.0065 3.5770 -0.8910 32 1 3.0065 3.5777 0.8889 33 1 4.1160 6.9742 0.0073 34 1 0.4607 -2.0228 -1.0765 35 1 2.0215 -2.2946 -1.9130 36 1 2.6564 -4.0535 -0.3903 37 1 0.8940 -4.3374 -0.5588 38 1 1.9272 -4.0031 1.9076 39 1 0.3974 -3.1700 1.4890 40 1 -0.5273 -1.6605 3.1251 41 1 -0.6306 -0.3340 1.9428 42 1 -0.2752 -1.9895 1.3941 43 1 2.8559 -1.1129 3.9220 44 1 1.2283 -0.6624 4.4840 45 1 1.5781 -2.3475 4.0289 46 1 1.0030 0.8110 1.2538 47 1 1.5168 1.0718 2.9380 48 1 2.7053 0.5668 1.7130 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416287144.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:05 Heat of formation + Delta-G solvation = 81.773216 kcal Electronic energy + Delta-G solvation = -24657.877133 eV Core-core repulsion = 21525.014882 eV Total energy + Delta-G solvation = -3132.862251 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.28062 -38.37434 -35.29532 -34.65638 -33.45415 -31.04203 -29.39534 -28.05050 -27.79613 -26.74358 -25.50077 -25.18456 -21.87403 -20.98735 -20.42563 -19.25509 -17.74728 -17.11928 -16.60086 -15.92117 -15.67163 -15.24418 -14.71625 -14.42969 -14.26184 -13.83381 -13.43868 -13.03330 -13.00615 -12.86218 -12.53665 -12.37248 -12.14958 -11.75094 -11.68578 -11.38995 -11.17533 -11.12438 -11.04834 -10.93978 -10.81274 -10.62843 -10.55119 -10.50206 -10.14871 -10.05344 -9.79180 -9.75346 -9.58197 -9.12517 -8.94049 -8.30595 -7.71662 -5.94409 -3.98532 3.22045 3.33560 3.33983 3.41067 3.44236 4.46233 4.49598 4.51535 4.70143 4.96651 4.98931 5.03799 5.14971 5.30099 5.38511 5.40773 5.46110 5.50582 5.51892 5.55586 5.61830 5.65233 5.67721 5.73510 5.81209 5.86905 5.89403 5.99841 6.07142 6.09800 6.13808 6.20455 6.20854 6.24963 6.26044 6.35806 6.52114 6.57188 6.81747 6.88909 6.97534 7.76315 7.77794 7.88531 8.09169 8.40494 8.75417 9.10061 9.64956 11.16591 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028602 B = 0.004338 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.725540 B = 6452.345000 C = 6679.166322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.630 5.630 3 C 0.539 3.461 4 O -0.536 6.536 5 C -0.138 4.138 6 C 0.038 3.962 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.058 3.942 10 N -0.889 5.889 11 Si 0.891 3.109 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.144 3.856 16 H 0.095 0.905 17 C -0.137 4.137 18 C -0.123 4.123 19 C -0.137 4.137 20 C -0.094 4.094 21 H 0.073 0.927 22 C -0.045 4.045 23 C -0.174 4.174 24 C -0.138 4.138 25 C -0.220 4.220 26 H 0.052 0.948 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.023 0.977 32 H 0.024 0.976 33 H 0.260 0.740 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.087 0.913 40 H 0.046 0.954 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.050 0.950 44 H 0.052 0.948 45 H 0.048 0.952 46 H 0.125 0.875 47 H 0.025 0.975 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.839 -20.457 2.239 22.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.366 5.366 3 C 0.333 3.667 4 O -0.413 6.413 5 C -0.178 4.178 6 C 0.000 4.000 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.143 4.143 10 N -0.528 5.528 11 Si 0.719 3.281 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.210 1.210 15 C 0.040 3.960 16 H 0.113 0.887 17 C -0.175 4.175 18 C -0.161 4.161 19 C -0.174 4.174 20 C -0.113 4.113 21 H 0.091 0.909 22 C -0.045 4.045 23 C -0.230 4.230 24 C -0.195 4.195 25 C -0.276 4.276 26 H 0.071 0.929 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.041 0.959 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.105 0.895 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.142 0.858 47 H 0.044 0.956 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.017 -20.299 2.227 21.938 hybrid contribution -0.345 0.858 0.176 0.942 sum -8.362 -19.441 2.403 21.299 Atomic orbital electron populations 1.22589 0.80652 1.03429 1.01766 1.48674 1.06193 1.05687 1.76060 1.20840 0.88493 0.85478 0.71938 1.90675 1.14383 1.87097 1.49141 1.22178 1.00826 0.92277 1.02492 1.18894 0.93142 0.89351 0.98598 1.21251 0.92926 0.90996 1.51184 0.92597 1.25016 0.94799 0.99182 0.95340 1.70011 1.06044 1.26417 1.50336 0.86557 0.80031 0.83935 0.77573 1.19742 1.21037 1.21039 1.21608 0.97363 0.83007 0.94028 0.88737 1.22815 1.01477 0.94625 0.98587 1.22443 1.01633 0.96552 0.95457 1.22869 1.02038 0.96276 0.96180 1.22288 0.99490 0.94269 0.95301 0.90900 1.20295 0.94557 0.95711 0.93979 1.23066 0.95983 1.02372 1.01596 1.21986 1.01181 1.00451 0.95900 1.24682 1.05691 0.94715 1.02537 0.92909 0.89394 0.90120 0.89970 0.90315 0.95877 0.95793 0.93042 0.90626 0.91381 0.91560 0.91620 0.92059 0.89499 0.93492 0.91162 0.90705 0.93047 0.92911 0.93285 0.85824 0.95577 0.90319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.62 6.06 59.85 0.36 0.98 16 2 N -0.63 -9.01 1.53 -180.94 -0.28 -9.29 16 3 C 0.54 10.35 4.29 -10.98 -0.05 10.30 16 4 O -0.54 -12.55 14.07 5.56 0.08 -12.47 16 5 C -0.14 -2.82 4.19 -27.89 -0.12 -2.93 16 6 C 0.04 1.02 4.26 -27.89 -0.12 0.90 16 7 C -0.53 -14.92 9.11 -34.44 -0.31 -15.23 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -27.54 13.29 55.43 0.74 -26.80 16 11 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 C 0.14 1.88 2.87 -66.81 -0.19 1.68 16 16 H 0.09 1.49 7.13 -51.93 -0.37 1.12 16 17 C -0.14 -1.37 6.23 -25.07 -0.16 -1.52 16 18 C -0.12 -1.03 6.91 -24.73 -0.17 -1.20 16 19 C -0.14 -1.21 5.88 -25.07 -0.15 -1.36 16 20 C -0.09 -1.09 2.40 -89.50 -0.21 -1.31 16 21 H 0.07 0.93 7.94 -51.93 -0.41 0.52 16 22 C -0.05 -0.55 0.60 -154.51 -0.09 -0.64 16 23 C -0.17 -1.69 6.69 37.16 0.25 -1.44 16 24 C -0.14 -1.61 7.90 37.16 0.29 -1.31 16 25 C -0.22 -3.47 5.48 37.16 0.20 -3.27 16 26 H 0.05 0.54 8.03 -51.92 -0.42 0.13 16 27 H 0.09 0.75 3.59 -51.93 -0.19 0.57 16 28 H 0.08 0.87 4.24 -51.93 -0.22 0.65 16 29 H 0.08 1.55 6.69 -51.92 -0.35 1.20 16 30 H 0.08 1.48 8.01 -51.93 -0.42 1.06 16 31 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 32 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.08 0.68 5.64 -51.93 -0.29 0.39 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.71 4.67 -51.93 -0.24 0.47 16 40 H 0.05 0.43 7.60 -51.93 -0.39 0.03 16 41 H 0.07 0.68 4.66 -51.93 -0.24 0.44 16 42 H 0.07 0.63 3.34 -51.93 -0.17 0.45 16 43 H 0.05 0.64 8.13 -51.93 -0.42 0.22 16 44 H 0.05 0.61 8.11 -51.93 -0.42 0.19 16 45 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.12 1.85 0.35 -113.98 -0.04 1.81 16 47 H 0.03 0.43 7.88 -51.93 -0.41 0.02 16 48 H 0.08 1.52 4.63 -51.93 -0.24 1.28 16 LS Contribution 331.68 15.07 5.00 5.00 Total: -1.00 -32.78 331.68 -7.79 -40.57 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -7.74 Total: 1.05 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -0.56 Total: -14.75 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.46 Total: -36.09 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.08 Total: -12.47 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.78 -7.79 -40.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416287144.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.343 kcal (2) G-P(sol) polarization free energy of solvation -32.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds