Wall clock time and date at job start Tue Mar 31 2020 06:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34776 * 120.00164 * 2 1 4 4 O 1.21281 * 120.00006 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.99886 * 0.02562 * 3 2 1 6 6 C 1.53005 * 109.47095 * 179.97438 * 5 3 2 7 7 C 1.50693 * 109.47052 * 179.97438 * 6 5 3 8 8 H 1.07993 * 120.00504 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99565 * 179.97438 * 7 6 5 10 10 N 1.31507 * 120.00555 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99759 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46833 * 90.00201 * 11 9 7 13 13 H 1.48503 * 109.47514 * 210.00182 * 11 9 7 14 14 H 1.48499 * 109.47472 * 330.00426 * 11 9 7 15 15 C 1.46496 * 119.99600 * 180.02562 * 2 1 3 16 16 H 1.08998 * 110.05711 * 181.41696 * 15 2 1 17 17 C 1.54378 * 110.07053 * 302.87232 * 15 2 1 18 18 C 1.54883 * 104.19770 * 95.62797 * 17 15 2 19 19 C 1.54895 * 102.75180 * 37.97128 * 18 17 15 20 20 C 1.53870 * 110.03675 * 59.99848 * 15 2 1 21 21 H 1.09001 * 110.03357 * 0.04530 * 20 15 2 22 22 C 1.52999 * 110.03673 * 121.43191 * 20 15 2 23 23 C 1.52997 * 109.47317 * 179.31146 * 22 20 15 24 24 C 1.52992 * 109.46961 * 59.30684 * 22 20 15 25 25 C 1.53006 * 109.46623 * 299.30965 * 22 20 15 26 26 H 1.09002 * 109.46710 * 269.99714 * 1 2 3 27 27 H 1.09004 * 109.46838 * 29.99405 * 1 2 3 28 28 H 1.08993 * 109.47475 * 149.99680 * 1 2 3 29 29 H 1.09008 * 109.46830 * 299.99261 * 5 3 2 30 30 H 1.08995 * 109.47861 * 59.99043 * 5 3 2 31 31 H 1.08999 * 109.46339 * 299.99554 * 6 5 3 32 32 H 1.08995 * 109.47338 * 59.98979 * 6 5 3 33 33 H 0.96999 * 120.00407 * 179.97438 * 10 9 7 34 34 H 1.09006 * 110.46134 * 336.95991 * 17 15 2 35 35 H 1.09001 * 110.61981 * 214.37781 * 17 15 2 36 36 H 1.09000 * 110.75623 * 279.65744 * 18 17 15 37 37 H 1.09004 * 110.91651 * 156.36086 * 18 17 15 38 38 H 1.08994 * 110.48782 * 203.38491 * 19 18 17 39 39 H 1.08994 * 110.48191 * 80.73172 * 19 18 17 40 40 H 1.09002 * 109.47153 * 299.99641 * 23 22 20 41 41 H 1.09001 * 109.46832 * 179.97438 * 23 22 20 42 42 H 1.09004 * 109.47261 * 59.99813 * 23 22 20 43 43 H 1.09001 * 109.47066 * 180.02562 * 24 22 20 44 44 H 1.08996 * 109.47747 * 300.00196 * 24 22 20 45 45 H 1.09002 * 109.47103 * 60.00608 * 24 22 20 46 46 H 1.08993 * 109.46955 * 300.00075 * 25 22 20 47 47 H 1.09000 * 109.47050 * 59.99904 * 25 22 20 48 48 H 1.09001 * 109.47002 * 179.97438 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3855 2.4723 0.0006 6 6 2.3798 3.6352 0.0011 7 6 1.6263 4.9403 0.0011 8 1 0.5464 4.9404 0.0011 9 6 2.3158 6.1343 0.0020 10 7 3.6309 6.1343 0.0025 11 14 1.3819 7.7521 0.0012 12 1 1.1329 8.1805 1.4011 13 1 2.1851 8.7872 -0.6978 14 1 0.0850 7.5747 -0.7002 15 6 2.1975 -1.2687 -0.0006 16 1 3.2708 -1.0808 0.0248 17 6 1.7807 -2.1216 1.2169 18 6 0.6841 -3.0646 0.6627 19 6 1.2103 -3.4055 -0.7537 20 6 1.8350 -2.0861 -1.2528 21 1 1.1147 -1.5385 -1.8606 22 6 3.0947 -2.3791 -2.0703 23 6 2.7223 -3.2063 -3.3023 24 6 4.0892 -3.1627 -1.2114 25 6 3.7322 -1.0611 -2.5146 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3633 0.8901 -0.5138 28 1 -0.3634 -0.8899 -0.5138 29 1 0.7586 2.5302 -0.8893 30 1 0.7590 2.5299 0.8907 31 1 3.0063 3.5770 0.8911 32 1 3.0065 3.5778 -0.8888 33 1 4.1159 6.9743 0.0028 34 1 1.3756 -1.4875 2.0056 35 1 2.6273 -2.6983 1.5894 36 1 -0.2749 -2.5498 0.6049 37 1 0.6014 -3.9652 1.2711 38 1 0.3890 -3.7083 -1.4031 39 1 1.9657 -4.1895 -0.7015 40 1 2.2681 -4.1453 -2.9858 41 1 3.6197 -3.4146 -3.8849 42 1 2.0137 -2.6480 -3.9142 43 1 4.9868 -3.3710 -1.7936 44 1 4.3546 -2.5734 -0.3337 45 1 3.6350 -4.1016 -0.8949 46 1 3.0237 -0.5029 -3.1264 47 1 3.9975 -0.4717 -1.6369 48 1 4.6299 -1.2697 -3.0966 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416287146.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:07 Heat of formation + Delta-G solvation = -67.324995 kcal Electronic energy + Delta-G solvation = -23749.896574 eV Core-core repulsion = 20610.568939 eV Total energy + Delta-G solvation = -3139.327635 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.52639 -38.41148 -35.67202 -33.81882 -33.41969 -30.98087 -28.87884 -28.00050 -27.32903 -26.89704 -26.29754 -25.23142 -22.08034 -21.06848 -20.30345 -18.47552 -18.14791 -17.04838 -16.32924 -15.83499 -15.30716 -15.15285 -14.60577 -14.41246 -14.27101 -13.81313 -13.53324 -13.08861 -12.86181 -12.54447 -12.42165 -12.33944 -12.13914 -12.08690 -11.90070 -11.60058 -11.57957 -11.35877 -11.15666 -11.07459 -11.03216 -10.92731 -10.86157 -10.57031 -10.35574 -10.27961 -10.23771 -9.90986 -9.57408 -9.11603 -8.89285 -8.32083 -8.25429 -5.93622 -3.97794 3.28884 3.34620 3.37479 3.41239 3.44058 4.41280 4.49272 4.51726 4.63524 4.95401 4.97730 5.02137 5.25943 5.32734 5.37935 5.41297 5.45217 5.47599 5.49799 5.55516 5.60446 5.65587 5.70104 5.71984 5.77885 5.80852 5.88071 5.88993 5.94014 6.01597 6.08242 6.13459 6.17951 6.21934 6.27873 6.28679 6.35185 6.46488 6.61442 6.88778 7.00861 7.77292 7.84324 7.90349 8.10423 8.42048 8.83202 9.10956 9.65557 11.17321 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026149 B = 0.003894 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.531649 B = 7188.397875 C = 7667.323562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.620 5.620 3 C 0.511 3.489 4 O -0.533 6.533 5 C -0.128 4.128 6 C 0.038 3.962 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.058 3.942 10 N -0.890 5.890 11 Si 0.892 3.108 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.136 3.864 16 H 0.107 0.893 17 C -0.134 4.134 18 C -0.126 4.126 19 C -0.123 4.123 20 C -0.091 4.091 21 H 0.077 0.923 22 C -0.060 4.060 23 C -0.139 4.139 24 C -0.146 4.146 25 C -0.150 4.150 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.022 0.978 32 H 0.023 0.977 33 H 0.260 0.740 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.050 0.950 47 H 0.075 0.925 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.298 -22.143 -2.208 23.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.355 5.355 3 C 0.302 3.698 4 O -0.409 6.409 5 C -0.168 4.168 6 C 0.000 4.000 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.143 4.143 10 N -0.528 5.528 11 Si 0.719 3.281 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.199 1.199 15 C 0.032 3.968 16 H 0.125 0.875 17 C -0.173 4.173 18 C -0.164 4.164 19 C -0.160 4.160 20 C -0.110 4.110 21 H 0.095 0.905 22 C -0.060 4.060 23 C -0.196 4.196 24 C -0.203 4.203 25 C -0.207 4.207 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.093 0.907 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.477 -21.994 -2.216 22.774 hybrid contribution -0.632 0.942 -0.012 1.135 sum -6.110 -21.052 -2.229 22.033 Atomic orbital electron populations 1.21731 0.80439 1.02805 1.01409 1.48085 1.06440 1.05642 1.75327 1.21548 0.88461 0.85534 0.74285 1.90628 1.14349 1.87187 1.48705 1.21875 1.00660 0.92148 1.02104 1.18891 0.93170 0.89391 0.98521 1.21224 0.92887 0.91066 1.51271 0.92691 1.25015 0.94800 0.99163 0.95345 1.69994 1.06046 1.26521 1.50278 0.86612 0.79794 0.83610 0.78051 1.20695 1.21233 1.19901 1.21779 0.98623 0.83108 0.93270 0.87523 1.22734 0.98843 0.97876 0.97803 1.22567 0.98509 0.99040 0.96236 1.22550 0.99927 0.97447 0.96088 1.22208 0.96820 0.95764 0.96242 0.90459 1.20513 0.94678 0.95869 0.94928 1.21871 1.01126 0.99476 0.97151 1.22009 0.98511 0.99853 0.99940 1.21998 0.99972 0.96276 1.02460 0.93122 0.90776 0.91529 0.90450 0.90472 0.95916 0.95887 0.92989 0.91202 0.91043 0.91447 0.91831 0.91964 0.90821 0.92781 0.92876 0.92892 0.92865 0.92252 0.92438 0.93075 0.90658 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.91 8.72 59.85 0.52 1.43 16 2 N -0.62 -9.17 2.69 -172.59 -0.46 -9.64 16 3 C 0.51 10.04 7.67 -10.99 -0.08 9.96 16 4 O -0.53 -12.45 14.10 5.56 0.08 -12.37 16 5 C -0.13 -2.66 4.19 -27.88 -0.12 -2.78 16 6 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 7 C -0.53 -15.07 9.11 -34.44 -0.31 -15.39 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -27.64 13.29 55.43 0.74 -26.91 16 11 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 15 C 0.14 1.77 1.92 -66.76 -0.13 1.64 16 16 H 0.11 1.67 3.85 -51.93 -0.20 1.47 16 17 C -0.13 -1.45 6.11 -25.02 -0.15 -1.60 16 18 C -0.13 -1.08 6.39 -24.74 -0.16 -1.24 16 19 C -0.12 -1.05 5.12 -25.06 -0.13 -1.18 16 20 C -0.09 -0.98 1.49 -89.50 -0.13 -1.12 16 21 H 0.08 0.91 7.02 -51.93 -0.36 0.54 16 22 C -0.06 -0.65 0.54 -154.51 -0.08 -0.73 16 23 C -0.14 -1.29 8.27 37.16 0.31 -0.98 16 24 C -0.15 -1.47 7.93 37.15 0.29 -1.18 16 25 C -0.15 -2.05 8.22 37.16 0.31 -1.74 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.85 6.44 -51.93 -0.33 0.51 16 28 H 0.07 0.63 5.54 -51.93 -0.29 0.34 16 29 H 0.08 1.48 7.40 -51.92 -0.38 1.10 16 30 H 0.08 1.49 8.11 -51.93 -0.42 1.07 16 31 H 0.02 0.68 8.10 -51.93 -0.42 0.25 16 32 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 33 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.07 0.81 8.01 -51.93 -0.42 0.40 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.56 6.54 -51.93 -0.34 0.22 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.60 5.49 -51.93 -0.29 0.32 16 40 H 0.05 0.44 7.22 -51.93 -0.38 0.06 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.67 6.43 -51.93 -0.33 0.33 16 45 H 0.06 0.50 5.98 -51.93 -0.31 0.19 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.07 1.25 5.24 -51.93 -0.27 0.98 16 48 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 355.12 15.07 5.35 5.35 Total: -1.00 -32.60 355.12 -7.92 -40.51 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -8.51 Total: -1.36 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -0.08 Total: -12.38 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.27 Total: -36.54 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.08 Total: -12.37 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.60 -7.92 -40.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416287146.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.813 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds