Wall clock time and date at job start Tue Mar 31 2020 05:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 110.99965 * 2 1 4 4 H 1.08996 * 109.52473 * 324.91902 * 3 2 1 5 5 C 1.53041 * 109.49715 * 204.83764 * 3 2 1 6 6 C 1.53043 * 109.53498 * 178.68799 * 5 3 2 7 7 C 1.52759 * 109.38452 * 61.23868 * 6 5 3 8 8 N 1.46924 * 109.00850 * 305.58341 * 7 6 5 9 9 C 1.34772 * 120.63496 * 233.58383 * 8 7 6 10 10 O 1.21584 * 120.00519 * 184.68310 * 9 8 7 11 11 N 1.34782 * 119.99698 * 4.41053 * 9 8 7 12 12 C 1.46501 * 119.99873 * 175.63659 * 11 9 8 13 13 C 1.52997 * 109.46823 * 184.93003 * 12 11 9 14 14 C 1.50703 * 115.55331 * 305.45259 * 13 12 11 15 15 H 1.07999 * 119.99656 * 144.64921 * 14 13 12 16 16 C 1.37873 * 119.99802 * 324.65559 * 14 13 12 17 17 N 1.31518 * 120.00294 * 2.97593 * 16 14 13 18 18 Si 1.86803 * 119.99720 * 182.97058 * 16 14 13 19 19 H 1.48506 * 109.46806 * 60.00483 * 18 16 14 20 20 H 1.48500 * 109.47128 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47638 * 300.00273 * 18 16 14 22 22 C 1.53005 * 117.49823 * 159.78773 * 13 12 11 23 23 C 1.52997 * 117.49992 * 91.13010 * 13 12 11 24 24 C 1.46924 * 118.73402 * 53.31378 * 8 7 6 25 25 H 1.09004 * 109.46868 * 60.00198 * 1 2 3 26 26 H 1.09000 * 109.46930 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47495 * 300.00173 * 1 2 3 28 28 H 1.00899 * 111.00478 * 236.04784 * 2 1 3 29 29 H 1.08997 * 109.46210 * 298.70103 * 5 3 2 30 30 H 1.08992 * 109.46570 * 58.66540 * 5 3 2 31 31 H 1.09000 * 109.49566 * 181.31834 * 6 5 3 32 32 H 1.08998 * 109.49724 * 301.37717 * 6 5 3 33 33 H 1.09003 * 109.50620 * 185.70356 * 7 6 5 34 34 H 1.08996 * 109.43456 * 65.42844 * 7 6 5 35 35 H 0.96997 * 119.99991 * 355.63364 * 11 9 8 36 36 H 1.08993 * 109.46888 * 304.92992 * 12 11 9 37 37 H 1.08999 * 109.46760 * 64.93213 * 12 11 9 38 38 H 0.96999 * 120.00079 * 185.00093 * 17 16 14 39 39 H 1.09007 * 117.49561 * 359.97438 * 22 13 12 40 40 H 1.08996 * 117.50153 * 145.01936 * 22 13 12 41 41 H 1.08997 * 117.50039 * 214.97756 * 23 13 12 42 42 H 1.09003 * 117.49721 * 359.96983 * 23 13 12 43 43 H 1.09001 * 109.58705 * 66.42829 * 24 8 7 44 44 H 1.09004 * 109.58580 * 186.84872 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3411 2.0128 -0.5904 5 6 3.4007 1.3791 -0.6060 6 6 3.9370 2.8122 -0.6364 7 6 4.0222 3.3521 0.7900 8 7 2.7089 3.2126 1.4337 9 6 2.1072 4.2753 2.0040 10 8 1.0616 4.1306 2.6072 11 7 2.6676 5.4975 1.9102 12 6 1.9676 6.6673 2.4465 13 6 2.7549 7.9338 2.1045 14 6 4.1982 7.9390 2.5380 15 1 4.9444 8.4223 1.9248 16 6 4.5659 7.3265 3.7172 17 7 3.6676 6.6876 4.4344 18 14 6.3403 7.4042 4.2962 19 1 6.7361 8.8224 4.4898 20 1 6.4738 6.6736 5.5821 21 1 7.2214 6.7791 3.2773 22 6 2.0017 9.2652 2.1406 23 6 2.4070 8.6508 0.7984 24 6 2.0611 1.8939 1.4386 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8306 -0.5261 -0.7813 29 1 4.0605 0.7574 -0.0009 30 1 3.3606 0.9848 -1.6213 31 1 4.9284 2.8200 -1.0895 32 1 3.2648 3.4399 -1.2214 33 1 4.3069 4.4040 0.7647 34 1 4.7655 2.7838 1.3491 35 1 3.5344 5.6025 1.4877 36 1 0.9722 6.7283 2.0066 37 1 1.8813 6.5744 3.5291 38 1 3.9094 6.3191 5.2985 39 1 0.9452 9.2387 2.4076 40 1 2.5503 10.1448 2.4775 41 1 3.2219 9.1265 0.2529 42 1 1.6175 8.2199 0.1826 43 1 2.6412 1.2041 2.0517 44 1 1.0522 1.9839 1.8412 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000418116056.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:35 Heat of formation + Delta-G solvation = 4.061059 kcal Electronic energy + Delta-G solvation = -23338.914769 eV Core-core repulsion = 20099.142323 eV Total energy + Delta-G solvation = -3239.772447 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.84277 -37.82236 -36.59448 -35.07783 -32.97426 -32.18288 -31.99267 -29.67715 -26.37626 -25.54164 -24.94860 -24.23180 -22.04478 -21.23755 -20.59489 -19.25734 -18.79842 -17.64911 -16.18609 -15.99515 -15.32492 -15.04239 -14.86832 -14.75112 -14.28119 -14.08280 -13.81801 -13.30131 -13.14654 -12.87646 -12.77985 -12.68110 -12.38578 -11.74196 -11.68971 -11.44357 -11.36112 -11.07942 -10.97819 -10.80196 -10.74243 -10.50391 -10.38752 -10.23734 -9.67642 -9.21591 -8.94894 -8.83959 -8.67654 -8.28599 -8.20371 -7.59106 -5.97052 -4.18620 3.21996 3.28678 3.30967 3.31363 4.01606 4.18368 4.30098 4.64232 4.79127 4.86330 4.98480 5.11701 5.17657 5.30784 5.38132 5.39728 5.49193 5.55209 5.68583 5.81823 5.85004 5.93289 5.94744 6.03743 6.07665 6.18380 6.28358 6.34055 6.58290 6.64031 6.74321 6.77327 6.90856 7.03737 7.16406 7.22014 7.27932 7.60241 7.69407 7.83948 8.03301 8.33799 8.77918 9.00202 9.44665 9.54902 10.91052 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019640 B = 0.005036 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.286497 B = 5558.392854 C = 6030.851862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.688 5.688 3 C 0.071 3.929 4 H 0.047 0.953 5 C -0.118 4.118 6 C -0.132 4.132 7 C 0.112 3.888 8 N -0.637 5.637 9 C 0.703 3.297 10 O -0.607 6.607 11 N -0.700 5.700 12 C 0.182 3.818 13 C 0.037 3.963 14 C -0.499 4.499 15 H 0.060 0.940 16 C 0.075 3.925 17 N -0.863 5.863 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.198 4.198 23 C -0.212 4.212 24 C 0.146 3.854 25 H 0.021 0.979 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.340 0.660 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.394 0.606 36 H 0.017 0.983 37 H 0.111 0.889 38 H 0.263 0.737 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.117 -10.639 -10.241 14.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.319 5.319 3 C -0.040 4.040 4 H 0.065 0.935 5 C -0.156 4.156 6 C -0.171 4.171 7 C -0.012 4.012 8 N -0.376 5.376 9 C 0.404 3.596 10 O -0.488 6.488 11 N -0.352 5.352 12 C 0.058 3.942 13 C 0.037 3.963 14 C -0.537 4.537 15 H 0.078 0.922 16 C -0.130 4.130 17 N -0.499 5.499 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.237 4.237 23 C -0.250 4.250 24 C 0.022 3.978 25 H 0.039 0.961 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.158 0.842 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.231 0.769 36 H 0.035 0.965 37 H 0.129 0.871 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.863 -10.927 -8.936 14.142 hybrid contribution 1.192 0.510 -0.836 1.543 sum 0.329 -10.417 -9.773 14.287 Atomic orbital electron populations 1.22262 0.87585 1.01632 1.00857 1.60283 1.07962 1.13878 1.49818 1.21962 0.95517 0.88967 0.97537 0.93464 1.21680 0.96099 0.97454 1.00365 1.21834 1.01708 0.96078 0.97474 1.21475 0.85300 1.02034 0.92424 1.47156 1.20270 1.08659 1.61528 1.15870 0.83467 0.80577 0.79639 1.90813 1.25320 1.84557 1.48086 1.44999 1.23301 1.04948 1.61989 1.20939 0.89863 0.81613 1.01780 1.19240 0.95058 0.88647 0.93399 1.20461 0.90603 1.35818 1.06768 0.92219 1.25008 0.97365 0.93857 0.96768 1.69889 1.33331 1.34518 1.12153 0.86661 0.84923 0.78269 0.78171 1.20244 1.21224 1.20172 1.22938 0.99027 1.00628 1.01109 1.22939 1.02367 1.08295 0.91363 1.21171 0.99531 0.82474 0.94634 0.96077 0.91520 0.91221 0.84169 0.90886 0.92174 0.90561 0.91516 0.89674 0.91790 0.76894 0.96489 0.87142 0.92619 0.91475 0.90234 0.90727 0.91454 0.91714 0.89404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.50 60.06 0.63 0.89 16 2 N -0.69 -7.28 6.66 -113.88 -0.76 -8.04 16 3 C 0.07 0.87 2.64 -67.59 -0.18 0.69 16 4 H 0.05 0.64 7.80 -51.93 -0.41 0.24 16 5 C -0.12 -1.21 5.17 -26.69 -0.14 -1.35 16 6 C -0.13 -1.47 6.06 -26.83 -0.16 -1.63 16 7 C 0.11 1.59 6.40 -3.93 -0.03 1.57 16 8 N -0.64 -11.17 2.98 -178.77 -0.53 -11.71 16 9 C 0.70 15.61 8.30 -86.92 -0.72 14.89 16 10 O -0.61 -15.63 15.78 5.29 0.08 -15.55 16 11 N -0.70 -15.64 5.07 -65.23 -0.33 -15.97 16 12 C 0.18 4.44 4.61 -4.04 -0.02 4.42 16 13 C 0.04 0.89 2.06 -155.66 -0.32 0.57 16 14 C -0.50 -12.62 8.31 -34.44 -0.29 -12.91 16 15 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 16 C 0.07 1.91 5.31 -17.82 -0.09 1.81 16 17 N -0.86 -23.17 10.17 55.43 0.56 -22.61 16 18 Si 0.89 19.99 29.54 -169.99 -5.02 14.96 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 C -0.20 -4.37 9.96 -26.69 -0.27 -4.64 16 23 C -0.21 -4.46 9.92 -26.70 -0.26 -4.73 16 24 C 0.15 2.29 5.89 -3.71 -0.02 2.26 16 25 H 0.02 0.20 8.06 -51.93 -0.42 -0.22 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.80 7.56 -51.93 -0.39 0.40 16 28 H 0.34 2.91 8.42 -39.29 -0.33 2.58 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 1.29 5.57 -51.93 -0.29 1.00 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.39 8.40 5.39 -40.82 -0.22 8.18 16 36 H 0.02 0.41 8.09 -51.93 -0.42 -0.01 16 37 H 0.11 3.08 5.90 -51.93 -0.31 2.77 16 38 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 39 H 0.07 1.41 8.14 -51.92 -0.42 0.98 16 40 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 41 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.09 1.57 6.51 -51.93 -0.34 1.23 16 LS Contribution 345.62 15.07 5.21 5.21 Total: -1.00 -29.08 345.62 -9.97 -39.05 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -7.31 Total: 12.80 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -1.87 Total: 1.85 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -1.06 Total: -58.32 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: 0.08 Total: -15.55 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.08 -9.97 -39.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418116056.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.112 kcal (2) G-P(sol) polarization free energy of solvation -29.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds