Wall clock time and date at job start Tue Mar 31 2020 05:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 110.99602 * 2 1 4 4 H 1.08999 * 109.52551 * 35.08619 * 3 2 1 5 5 C 1.53039 * 109.49481 * 155.16405 * 3 2 1 6 6 C 1.53046 * 109.53797 * 181.31852 * 5 3 2 7 7 C 1.53194 * 109.31061 * 298.63338 * 6 5 3 8 8 N 1.46922 * 108.77609 * 54.63376 * 7 6 5 9 9 C 1.34780 * 120.63140 * 126.36534 * 8 7 6 10 10 O 1.21588 * 120.00109 * 174.96060 * 9 8 7 11 11 N 1.34775 * 119.99666 * 354.96879 * 9 8 7 12 12 C 1.46505 * 120.00083 * 185.02790 * 11 9 8 13 13 C 1.52992 * 109.47249 * 185.00698 * 12 11 9 14 14 C 1.50700 * 115.55345 * 275.57474 * 13 12 11 15 15 H 1.07997 * 120.00115 * 114.80169 * 14 13 12 16 16 C 1.37878 * 119.99828 * 294.79979 * 14 13 12 17 17 N 1.31517 * 120.00164 * 352.06383 * 16 14 13 18 18 Si 1.86800 * 119.99893 * 172.06433 * 16 14 13 19 19 H 1.48493 * 109.47316 * 59.99941 * 18 16 14 20 20 H 1.48506 * 109.46997 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46931 * 299.99856 * 18 16 14 22 22 C 1.53001 * 117.49549 * 129.86778 * 13 12 11 23 23 C 1.52997 * 60.00099 * 252.51078 * 22 13 12 24 24 C 1.46923 * 118.74124 * 306.39447 * 8 7 6 25 25 H 1.09006 * 109.46984 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47208 * 299.99450 * 1 2 3 27 27 H 1.09009 * 109.47437 * 60.00038 * 1 2 3 28 28 H 1.00895 * 111.00187 * 123.95575 * 2 1 3 29 29 H 1.08998 * 109.46080 * 301.34014 * 5 3 2 30 30 H 1.09008 * 109.46285 * 61.29855 * 5 3 2 31 31 H 1.08992 * 109.49594 * 58.58305 * 6 5 3 32 32 H 1.09006 * 109.49658 * 178.68735 * 6 5 3 33 33 H 1.08997 * 109.58796 * 174.42275 * 7 6 5 34 34 H 1.08998 * 109.58632 * 294.70579 * 7 6 5 35 35 H 0.96999 * 120.00156 * 5.03456 * 11 9 8 36 36 H 1.09000 * 109.46822 * 305.00986 * 12 11 9 37 37 H 1.09003 * 109.46738 * 65.00731 * 12 11 9 38 38 H 0.96998 * 120.00075 * 185.00729 * 17 16 14 39 39 H 1.08999 * 117.49963 * 359.97438 * 22 13 12 40 40 H 1.09005 * 117.50091 * 145.02251 * 22 13 12 41 41 H 1.09002 * 117.50054 * 252.51177 * 23 22 13 42 42 H 1.08998 * 117.49928 * 107.49237 * 23 22 13 43 43 H 1.09009 * 109.58335 * 293.81657 * 24 8 7 44 44 H 1.09003 * 109.58991 * 173.39907 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 1 1.3411 2.0128 0.5905 5 6 3.4006 1.3792 0.6059 6 6 3.9370 2.8123 0.6366 7 6 4.0246 3.3511 -0.7948 8 7 2.7088 3.2127 -1.4336 9 6 2.1071 4.2755 -2.0038 10 8 1.0624 4.1304 -2.6087 11 7 2.6636 5.4989 -1.9035 12 6 1.9564 6.6704 -2.4268 13 6 2.8516 7.9047 -2.3009 14 6 2.8188 8.5978 -0.9632 15 1 3.7039 8.6203 -0.3448 16 6 1.6587 9.2032 -0.5287 17 7 0.6303 9.3133 -1.3411 18 14 1.5477 9.8671 1.2138 19 1 2.5910 10.9043 1.4157 20 1 0.2059 10.4651 1.4311 21 1 1.7577 8.7591 2.1800 22 6 3.0306 8.7773 -3.5449 23 6 4.1809 7.8936 -3.0584 24 6 2.0611 1.8940 -1.4385 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8306 -0.5261 0.7813 29 1 3.3605 0.9847 1.6212 30 1 4.0605 0.7574 0.0008 31 1 3.2643 3.4400 1.2210 32 1 4.9284 2.8201 1.0896 33 1 4.3113 4.4025 -0.7725 34 1 4.7666 2.7819 -1.3547 35 1 3.5323 5.6037 -1.4850 36 1 1.7086 6.5067 -3.4756 37 1 1.0404 6.8262 -1.8571 38 1 -0.1589 9.8026 -1.0608 39 1 2.5110 8.4717 -4.4531 40 1 3.1246 9.8530 -3.3959 41 1 5.0316 8.3878 -2.5892 42 1 4.4177 7.0069 -3.6464 43 1 2.6412 1.2043 -2.0518 44 1 1.0521 1.9840 -1.8411 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000418116057.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:37 Heat of formation + Delta-G solvation = -0.922994 kcal Electronic energy + Delta-G solvation = -23006.005957 eV Core-core repulsion = 19766.017385 eV Total energy + Delta-G solvation = -3239.988572 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.07680 -37.99642 -36.65192 -35.22342 -33.22050 -32.18845 -32.03840 -29.80476 -26.65202 -25.54166 -25.04520 -24.33424 -22.17339 -21.29631 -20.69670 -19.37436 -19.04019 -17.85066 -16.20182 -16.05389 -15.51086 -15.22819 -14.94813 -14.68749 -14.48805 -14.19806 -13.83648 -13.49977 -13.35172 -13.13146 -12.86495 -12.74965 -12.49221 -11.79446 -11.71649 -11.55005 -11.50981 -11.08099 -11.03038 -10.95139 -10.88316 -10.54434 -10.49843 -10.29168 -9.68635 -9.42465 -9.04362 -8.77158 -8.59057 -8.44814 -8.21157 -7.91306 -6.07969 -4.14751 3.03247 3.26373 3.32880 3.33654 3.75582 4.03521 4.34727 4.44444 4.64704 4.75806 4.89433 5.05727 5.14530 5.24860 5.27395 5.35041 5.36956 5.43922 5.53435 5.72387 5.75724 5.81254 5.82503 5.90536 6.02280 6.06095 6.16964 6.32631 6.49033 6.59489 6.63584 6.70152 6.85377 6.96516 7.06160 7.15487 7.33425 7.37683 7.52405 7.56213 7.84225 8.35117 8.59615 8.84589 9.20275 9.49902 10.99783 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018117 B = 0.004631 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.170612 B = 6044.215462 C = 6440.552431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.688 5.688 3 C 0.069 3.931 4 H 0.049 0.951 5 C -0.118 4.118 6 C -0.134 4.134 7 C 0.111 3.889 8 N -0.636 5.636 9 C 0.702 3.298 10 O -0.599 6.599 11 N -0.726 5.726 12 C 0.180 3.820 13 C 0.035 3.965 14 C -0.500 4.500 15 H 0.060 0.940 16 C 0.073 3.927 17 N -0.874 5.874 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.164 4.164 23 C -0.208 4.208 24 C 0.145 3.855 25 H 0.067 0.933 26 H 0.022 0.978 27 H 0.069 0.931 28 H 0.341 0.659 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.393 0.607 36 H 0.039 0.961 37 H 0.077 0.923 38 H 0.263 0.737 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.981 -15.505 4.243 17.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.319 5.319 3 C -0.041 4.041 4 H 0.067 0.933 5 C -0.156 4.156 6 C -0.173 4.173 7 C -0.013 4.013 8 N -0.375 5.375 9 C 0.403 3.597 10 O -0.478 6.478 11 N -0.381 5.381 12 C 0.057 3.943 13 C 0.034 3.966 14 C -0.538 4.538 15 H 0.078 0.922 16 C -0.131 4.131 17 N -0.509 5.509 18 Si 0.718 3.282 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.202 4.202 23 C -0.246 4.246 24 C 0.021 3.979 25 H 0.085 0.915 26 H 0.041 0.959 27 H 0.088 0.912 28 H 0.159 0.841 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.228 0.772 36 H 0.057 0.943 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.987 -15.603 3.113 16.674 hybrid contribution 0.094 0.821 2.101 2.258 sum 5.081 -14.783 5.214 16.478 Atomic orbital electron populations 1.22275 0.87491 1.01708 1.00960 1.60291 1.08054 1.13728 1.49859 1.21959 0.95676 0.89170 0.97332 0.93256 1.21681 0.96007 0.97352 1.00549 1.21910 1.01948 0.96209 0.97186 1.21588 0.84983 1.01811 0.92872 1.47218 1.20316 1.08801 1.61140 1.15949 0.83332 0.80568 0.79802 1.90862 1.24598 1.84581 1.47792 1.45488 1.23501 1.05398 1.63690 1.20895 0.95636 0.81308 0.96471 1.19071 0.91505 0.93438 0.92567 1.20378 0.96854 1.35854 1.00696 0.92213 1.24979 0.95504 0.95501 0.97113 1.69956 1.05604 1.39890 1.35488 0.86691 0.77243 0.79108 0.85141 1.20250 1.21232 1.20237 1.22706 1.01397 0.97458 0.98678 1.22877 0.93508 1.01647 1.06542 1.21226 0.99566 0.82105 0.94995 0.91450 0.95926 0.91236 0.84079 0.92011 0.90881 0.91183 0.90440 0.89882 0.91560 0.77153 0.94272 0.90522 0.92693 0.91615 0.89989 0.90438 0.91474 0.91496 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.50 60.06 0.63 0.88 16 2 N -0.69 -6.82 6.67 -113.87 -0.76 -7.58 16 3 C 0.07 0.79 2.64 -67.59 -0.18 0.62 16 4 H 0.05 0.66 7.80 -51.93 -0.41 0.26 16 5 C -0.12 -1.09 5.17 -26.69 -0.14 -1.23 16 6 C -0.13 -1.34 6.08 -26.61 -0.16 -1.51 16 7 C 0.11 1.32 6.43 -3.71 -0.02 1.30 16 8 N -0.64 -9.88 2.97 -178.50 -0.53 -10.41 16 9 C 0.70 14.19 8.30 -86.92 -0.72 13.47 16 10 O -0.60 -14.43 15.76 5.29 0.08 -14.34 16 11 N -0.73 -14.67 5.37 -65.22 -0.35 -15.02 16 12 C 0.18 4.28 5.53 -4.04 -0.02 4.26 16 13 C 0.04 0.83 1.32 -155.66 -0.21 0.63 16 14 C -0.50 -13.00 8.82 -34.44 -0.30 -13.30 16 15 H 0.06 1.52 7.83 -52.49 -0.41 1.11 16 16 C 0.07 1.96 5.22 -17.82 -0.09 1.86 16 17 N -0.87 -24.47 12.60 55.43 0.70 -23.77 16 18 Si 0.89 20.66 29.55 -169.99 -5.02 15.64 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 22 C -0.16 -3.73 9.88 -26.73 -0.26 -4.00 16 23 C -0.21 -4.28 9.78 -26.73 -0.26 -4.54 16 24 C 0.15 2.05 5.89 -3.71 -0.02 2.02 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.02 0.22 8.06 -51.93 -0.42 -0.20 16 27 H 0.07 0.77 7.56 -51.92 -0.39 0.37 16 28 H 0.34 2.72 8.42 -39.29 -0.33 2.39 16 29 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 30 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.01 5.56 -51.93 -0.29 0.73 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.39 7.07 5.87 -40.82 -0.24 6.83 16 36 H 0.04 0.95 7.87 -51.93 -0.41 0.55 16 37 H 0.08 2.10 7.26 -51.93 -0.38 1.72 16 38 H 0.26 7.10 8.32 -40.82 -0.34 6.76 16 39 H 0.07 1.44 8.06 -51.93 -0.42 1.02 16 40 H 0.08 1.93 8.14 -51.93 -0.42 1.51 16 41 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 44 H 0.09 1.47 6.51 -51.93 -0.34 1.13 16 LS Contribution 350.28 15.07 5.28 5.28 Total: -1.00 -30.31 350.28 -9.76 -40.07 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -7.39 Total: 9.68 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -1.76 Total: 0.45 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -0.94 Total: -56.78 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.08 Total: -14.34 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.31 -9.76 -40.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418116057.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.145 kcal (2) G-P(sol) polarization free energy of solvation -30.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds