Wall clock time and date at job start Tue Mar 31 2020 05:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 110.99883 * 2 1 4 4 C 1.53000 * 109.46886 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.87349 * 64.56741 * 4 3 2 6 6 C 1.54326 * 109.87998 * 185.74044 * 4 3 2 7 7 C 1.55445 * 102.96841 * 141.61299 * 6 4 3 8 8 C 1.54914 * 101.45097 * 324.51328 * 7 6 4 9 9 N 1.47022 * 109.88574 * 303.54720 * 4 3 2 10 10 C 1.34778 * 125.64451 * 61.66057 * 9 4 3 11 11 O 1.21584 * 120.00202 * 356.57835 * 10 9 4 12 12 N 1.34774 * 119.99665 * 176.57320 * 10 9 4 13 13 C 1.46496 * 120.00084 * 185.13892 * 12 10 9 14 14 C 1.52996 * 109.47530 * 184.97582 * 13 12 10 15 15 C 1.50703 * 115.55147 * 275.07078 * 14 13 12 16 16 H 1.08006 * 119.99539 * 116.37535 * 15 14 13 17 17 C 1.37868 * 120.00167 * 296.37798 * 15 14 13 18 18 N 1.31522 * 120.00068 * 354.21396 * 17 15 14 19 19 Si 1.86805 * 120.00230 * 174.21589 * 17 15 14 20 20 H 1.48500 * 109.46798 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.46989 * 119.99860 * 19 17 15 22 22 H 1.48492 * 109.47173 * 239.99991 * 19 17 15 23 23 C 1.52998 * 117.50120 * 129.36236 * 14 13 12 24 24 C 1.52997 * 117.49829 * 60.73976 * 14 13 12 25 25 H 1.08999 * 109.47017 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46808 * 299.99610 * 1 2 3 27 27 H 1.08999 * 109.47314 * 60.00019 * 1 2 3 28 28 H 1.00908 * 110.99603 * 236.04874 * 2 1 3 29 29 H 1.09001 * 109.46962 * 60.00516 * 3 2 1 30 30 H 1.08997 * 109.47060 * 300.00249 * 3 2 1 31 31 H 1.09008 * 110.71961 * 259.97107 * 6 4 3 32 32 H 1.08997 * 110.72167 * 23.06816 * 6 4 3 33 33 H 1.08999 * 111.11662 * 206.46575 * 7 6 4 34 34 H 1.08993 * 111.01522 * 82.52410 * 7 6 4 35 35 H 1.08999 * 110.36590 * 278.11464 * 8 7 6 36 36 H 1.08997 * 110.36720 * 155.89526 * 8 7 6 37 37 H 0.97004 * 120.00537 * 5.14130 * 12 10 9 38 38 H 1.08997 * 109.47226 * 304.97785 * 13 12 10 39 39 H 1.09007 * 109.47413 * 64.98005 * 13 12 10 40 40 H 0.97002 * 120.00037 * 185.00630 * 18 17 15 41 41 H 1.08998 * 117.49766 * 0.02562 * 23 14 13 42 42 H 1.09004 * 117.50511 * 145.02145 * 23 14 13 43 43 H 1.09000 * 117.50601 * 214.97729 * 24 14 13 44 44 H 1.09001 * 117.50018 * 0.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5249 1.3306 -0.0006 5 1 3.8832 0.8807 -0.9266 6 6 4.0881 2.7600 0.1445 7 6 5.3188 2.5575 1.0723 8 6 4.8135 1.4350 2.0128 9 7 4.0049 0.5533 1.1513 10 6 3.7483 -0.7497 1.3814 11 8 3.0153 -1.3665 0.6327 12 7 4.3045 -1.3690 2.4414 13 6 4.1175 -2.8098 2.6291 14 6 4.7398 -3.2357 3.9603 15 6 6.2157 -3.5376 3.9209 16 1 6.9060 -2.9327 4.4904 17 6 6.6849 -4.5857 3.1579 18 7 5.8377 -5.3916 2.5558 19 14 8.5239 -4.8612 2.9793 20 1 9.2568 -3.8247 3.7499 21 1 8.8758 -6.2062 3.5008 22 1 8.9008 -4.7719 1.5458 23 6 3.8741 -4.0640 4.9119 24 6 4.1824 -2.6008 5.2359 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8306 -0.5261 -0.7815 29 1 1.6460 1.8947 0.8900 30 1 1.6459 1.8947 -0.8899 31 1 4.3964 3.1533 -0.8243 32 1 3.3547 3.4180 0.6105 33 1 5.5418 3.4655 1.6325 34 1 6.1878 2.2284 0.5027 35 1 4.1989 1.8551 2.8089 36 1 5.6553 0.8855 2.4340 37 1 4.8286 -0.8607 3.0802 38 1 3.0522 -3.0401 2.6359 39 1 4.6005 -3.3482 1.8136 40 1 6.1646 -6.1707 2.0793 41 1 2.8614 -4.3058 4.5894 42 1 4.3720 -4.8276 5.5096 43 1 4.8831 -2.4018 6.0468 44 1 3.3721 -1.8800 5.1268 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000418120546.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:23 Heat of formation + Delta-G solvation = 21.336759 kcal Electronic energy + Delta-G solvation = -23305.251721 eV Core-core repulsion = 20066.228405 eV Total energy + Delta-G solvation = -3239.023316 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.86009 -37.54265 -36.29398 -35.36381 -32.86556 -31.99474 -31.03181 -30.03348 -26.14991 -25.82548 -24.97139 -23.30204 -21.94223 -21.19691 -20.93060 -19.20212 -18.77450 -17.66377 -16.42027 -15.98856 -15.62545 -14.67129 -14.62670 -14.35102 -14.11749 -14.01702 -13.62083 -13.43270 -12.94193 -12.90987 -12.58872 -12.40256 -12.26666 -11.64519 -11.53451 -11.45984 -11.29187 -11.21855 -10.96394 -10.87123 -10.81740 -10.75329 -10.46365 -10.23161 -9.48864 -9.09200 -8.92323 -8.54802 -8.37755 -8.13565 -7.70473 -7.54699 -6.02285 -4.08786 3.25006 3.28648 3.37457 3.39597 4.13039 4.36068 4.39952 4.52501 4.74396 4.84460 4.97037 5.16674 5.23056 5.34552 5.40321 5.47805 5.55634 5.57730 5.64280 5.67565 5.71499 5.79005 5.83538 6.08033 6.09525 6.11486 6.21514 6.41092 6.58784 6.66506 6.71092 6.84175 7.05954 7.14103 7.38196 7.41879 7.63595 7.67041 7.82480 7.90986 7.92189 8.42494 8.86599 8.95093 9.55627 9.58819 11.05422 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017786 B = 0.005086 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.878508 B = 5503.565953 C = 6085.640864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.650 5.650 3 C 0.049 3.951 4 C 0.158 3.842 5 H 0.066 0.934 6 C -0.126 4.126 7 C -0.130 4.130 8 C 0.100 3.900 9 N -0.632 5.632 10 C 0.717 3.283 11 O -0.557 6.557 12 N -0.731 5.731 13 C 0.186 3.814 14 C 0.036 3.964 15 C -0.495 4.495 16 H 0.060 0.940 17 C 0.072 3.928 18 N -0.875 5.875 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.168 4.168 24 C -0.208 4.208 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.006 0.994 28 H 0.354 0.646 29 H 0.065 0.935 30 H 0.024 0.976 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.388 0.612 38 H 0.036 0.964 39 H 0.077 0.923 40 H 0.261 0.739 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.196 16.156 -3.994 17.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.285 5.285 3 C -0.082 4.082 4 C 0.053 3.947 5 H 0.084 0.916 6 C -0.165 4.165 7 C -0.168 4.168 8 C -0.024 4.024 9 N -0.373 5.373 10 C 0.419 3.581 11 O -0.431 6.431 12 N -0.385 5.385 13 C 0.063 3.937 14 C 0.035 3.965 15 C -0.533 4.533 16 H 0.078 0.922 17 C -0.132 4.132 18 N -0.511 5.511 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.207 4.207 24 C -0.245 4.245 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.024 0.976 28 H 0.176 0.824 29 H 0.084 0.916 30 H 0.042 0.958 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.221 0.779 38 H 0.054 0.946 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.713 15.296 -4.054 16.511 hybrid contribution 0.954 0.279 -0.579 1.150 sum -3.759 15.575 -4.633 16.679 Atomic orbital electron populations 1.22192 0.90017 1.01292 0.98694 1.60970 1.05071 1.10841 1.51624 1.22446 0.94638 0.91606 0.99527 1.21311 0.92963 0.90627 0.89800 0.91574 1.22692 0.97742 0.95425 1.00598 1.22782 0.97758 0.98545 0.97759 1.22171 0.94930 0.91703 0.93621 1.47505 1.55688 1.08519 1.25597 1.15416 0.80523 0.79621 0.82556 1.90779 1.39173 1.63681 1.49517 1.45288 1.56118 1.10696 1.26401 1.20769 0.97378 0.76595 0.98941 1.19112 0.94167 0.97501 0.85676 1.20476 0.89614 1.15088 1.28135 0.92213 1.24978 0.97466 0.95926 0.94823 1.69973 1.33756 1.13541 1.33846 0.86576 0.85752 0.78006 0.77898 1.19775 1.21064 1.20966 1.22721 0.99320 0.92439 1.06195 1.22853 1.03028 0.96145 1.02492 0.91814 0.92879 0.97610 0.82428 0.91642 0.95813 0.90373 0.90644 0.90175 0.90601 0.92264 0.90799 0.77914 0.94551 0.90519 0.92886 0.91649 0.90173 0.90598 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.70 60.07 0.64 1.02 16 2 N -0.65 -10.28 3.55 -121.13 -0.43 -10.71 16 3 C 0.05 0.63 5.27 -3.83 -0.02 0.61 16 4 C 0.16 2.02 3.31 -66.95 -0.22 1.80 16 5 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 6 C -0.13 -1.13 6.49 -24.74 -0.16 -1.29 16 7 C -0.13 -1.19 7.11 -24.42 -0.17 -1.36 16 8 C 0.10 1.21 6.60 -2.53 -0.02 1.19 16 9 N -0.63 -9.77 3.06 -168.69 -0.52 -10.29 16 10 C 0.72 14.31 8.12 -86.92 -0.71 13.60 16 11 O -0.56 -12.49 12.28 5.29 0.06 -12.42 16 12 N -0.73 -15.10 5.41 -65.23 -0.35 -15.45 16 13 C 0.19 4.50 5.51 -4.05 -0.02 4.47 16 14 C 0.04 0.88 1.36 -155.66 -0.21 0.67 16 15 C -0.50 -13.11 8.84 -34.44 -0.30 -13.42 16 16 H 0.06 1.57 7.82 -52.48 -0.41 1.16 16 17 C 0.07 1.94 5.24 -17.82 -0.09 1.85 16 18 N -0.87 -24.77 12.36 55.43 0.69 -24.09 16 19 Si 0.89 20.91 29.55 -169.99 -5.02 15.89 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C -0.17 -3.91 9.88 -26.73 -0.26 -4.18 16 24 C -0.21 -4.41 9.76 -26.73 -0.26 -4.67 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.01 0.07 8.14 -51.93 -0.42 -0.36 16 28 H 0.35 5.95 7.49 -39.29 -0.29 5.65 16 29 H 0.07 0.85 8.06 -51.93 -0.42 0.44 16 30 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.07 0.60 7.79 -51.93 -0.40 0.20 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.93 7.25 -51.93 -0.38 0.55 16 37 H 0.39 7.38 6.86 -40.82 -0.28 7.10 16 38 H 0.04 0.91 7.86 -51.93 -0.41 0.50 16 39 H 0.08 2.13 7.04 -51.93 -0.37 1.76 16 40 H 0.26 7.09 8.32 -40.82 -0.34 6.75 16 41 H 0.06 1.47 8.05 -51.93 -0.42 1.05 16 42 H 0.08 1.92 8.14 -51.93 -0.42 1.49 16 43 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 44 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 349.95 15.07 5.27 5.27 Total: -1.00 -30.02 349.95 -9.70 -39.71 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -7.58 Total: 11.78 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -1.81 Total: 0.30 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: -0.61 Total: -60.54 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.06 Total: -12.42 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.02 -9.70 -39.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418120546.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.052 kcal (2) G-P(sol) polarization free energy of solvation -30.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds