Wall clock time and date at job start Tue Mar 31 2020 05:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 110.99895 * 2 1 4 4 C 1.52999 * 109.47287 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.87075 * 295.70360 * 4 3 2 6 6 C 1.54323 * 109.88556 * 174.68452 * 4 3 2 7 7 C 1.55402 * 102.82758 * 218.48532 * 6 4 3 8 8 C 1.54903 * 101.66914 * 35.33387 * 7 6 4 9 9 N 1.47027 * 109.87834 * 56.71677 * 4 3 2 10 10 C 1.34770 * 125.65018 * 298.39001 * 9 4 3 11 11 O 1.21589 * 120.00133 * 353.94109 * 10 9 4 12 12 N 1.34777 * 120.00150 * 173.93684 * 10 9 4 13 13 C 1.46505 * 120.00194 * 185.69766 * 12 10 9 14 14 C 1.52994 * 109.46956 * 183.83838 * 13 12 10 15 15 C 1.50696 * 115.55469 * 306.62606 * 14 13 12 16 16 H 1.08004 * 119.99896 * 145.03149 * 15 14 13 17 17 C 1.37879 * 119.99935 * 325.03571 * 15 14 13 18 18 N 1.31514 * 120.00041 * 350.43135 * 17 15 14 19 19 Si 1.86797 * 119.99853 * 170.42905 * 17 15 14 20 20 H 1.48498 * 109.47386 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46783 * 119.99942 * 19 17 15 22 22 H 1.48494 * 109.47433 * 239.99957 * 19 17 15 23 23 C 1.53001 * 117.49539 * 160.95212 * 14 13 12 24 24 C 1.53003 * 117.49811 * 92.29876 * 14 13 12 25 25 H 1.08997 * 109.47466 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47011 * 300.00143 * 1 2 3 27 27 H 1.09004 * 109.47170 * 59.99705 * 1 2 3 28 28 H 1.00889 * 111.00290 * 123.95505 * 2 1 3 29 29 H 1.08995 * 109.47395 * 59.99699 * 3 2 1 30 30 H 1.09011 * 109.47241 * 300.00177 * 3 2 1 31 31 H 1.09005 * 110.71827 * 336.75080 * 6 4 3 32 32 H 1.08998 * 110.71974 * 100.02322 * 6 4 3 33 33 H 1.09008 * 110.88629 * 277.26339 * 7 6 4 34 34 H 1.09004 * 111.03451 * 153.47396 * 7 6 4 35 35 H 1.09002 * 110.36927 * 204.23590 * 8 7 6 36 36 H 1.09006 * 110.45872 * 81.96581 * 8 7 6 37 37 H 0.96999 * 119.99736 * 5.70551 * 12 10 9 38 38 H 1.08999 * 109.46742 * 303.84469 * 13 12 10 39 39 H 1.09004 * 109.46611 * 63.84263 * 13 12 10 40 40 H 0.97000 * 120.00056 * 185.02635 * 18 17 15 41 41 H 1.09005 * 117.49881 * 0.02562 * 23 14 13 42 42 H 1.09005 * 117.49670 * 145.01887 * 23 14 13 43 43 H 1.08999 * 117.50267 * 214.97494 * 24 14 13 44 44 H 1.09001 * 117.49818 * 0.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5249 1.3307 -0.0006 5 1 3.8838 0.8762 0.9228 6 6 4.0880 2.7612 -0.1351 7 6 5.3155 2.5626 -1.0672 8 6 4.8121 1.4450 -2.0144 9 7 4.0039 0.5590 -1.1568 10 6 3.7465 -0.7425 -1.3938 11 8 3.1583 -1.4070 -0.5626 12 7 4.1410 -1.3075 -2.5520 13 6 3.7536 -2.6855 -2.8642 14 6 4.4050 -3.1125 -4.1810 15 6 4.1634 -2.1964 -5.3529 16 1 4.9372 -2.0493 -6.0918 17 6 2.9545 -1.5460 -5.4817 18 7 1.9496 -1.8641 -4.6952 19 14 2.7441 -0.2130 -6.7733 20 1 4.0145 -0.0460 -7.5239 21 1 1.6618 -0.6010 -7.7132 22 1 2.3884 1.0671 -6.1102 23 6 4.5053 -4.6124 -4.4657 24 6 5.7612 -3.8164 -4.1025 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8306 -0.5261 0.7813 29 1 1.6459 1.8948 0.8899 30 1 1.6459 1.8948 -0.8901 31 1 3.3554 3.4221 -0.5985 32 1 4.3969 3.1469 0.8364 33 1 6.1851 2.2312 -0.4994 34 1 5.5372 3.4744 -1.6218 35 1 5.6547 0.8981 -2.4375 36 1 4.1974 1.8675 -2.8093 37 1 4.6815 -0.8018 -3.1789 38 1 4.0853 -3.3463 -2.0634 39 1 2.6693 -2.7453 -2.9591 40 1 1.0789 -1.4593 -4.8330 41 1 4.1067 -5.2949 -3.7150 42 1 4.3967 -4.9366 -5.5008 43 1 6.4785 -3.6173 -4.8987 44 1 6.1891 -3.9757 -3.1127 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000418120548.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:25 Heat of formation + Delta-G solvation = 19.495692 kcal Electronic energy + Delta-G solvation = -23830.378158 eV Core-core repulsion = 20591.275007 eV Total energy + Delta-G solvation = -3239.103151 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.66412 -37.39167 -36.20797 -35.20230 -32.70725 -32.06570 -30.86067 -29.88787 -25.91184 -25.66308 -25.03217 -23.15970 -21.73720 -21.13423 -20.83342 -19.12093 -18.59598 -17.48888 -16.28937 -15.98921 -15.46610 -14.71440 -14.45092 -14.24553 -14.06403 -13.68647 -13.57507 -13.21302 -12.81283 -12.72322 -12.46804 -12.29005 -12.16016 -11.54550 -11.49393 -11.34772 -11.21529 -11.11074 -11.01677 -10.73015 -10.67483 -10.61893 -10.43659 -10.17102 -9.47110 -9.04094 -8.85518 -8.72153 -8.18644 -8.08136 -7.52786 -7.42655 -5.95028 -4.07329 3.23874 3.34155 3.36447 3.44010 4.34979 4.38434 4.50283 4.64597 4.89243 4.96634 5.05185 5.22215 5.36716 5.47758 5.53757 5.59937 5.68366 5.72564 5.76687 5.81491 5.88287 5.90565 5.95195 6.13852 6.23341 6.28111 6.35042 6.42993 6.68136 6.71964 6.83815 6.88128 7.02012 7.23254 7.36840 7.53139 7.70390 7.91822 7.99411 8.07561 8.12578 8.44194 8.88089 9.20936 9.53031 9.82866 10.99298 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014642 B = 0.006433 C = 0.006208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.861837 B = 4351.364349 C = 4509.170676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.654 5.654 3 C 0.050 3.950 4 C 0.161 3.839 5 H 0.065 0.935 6 C -0.127 4.127 7 C -0.130 4.130 8 C 0.101 3.899 9 N -0.633 5.633 10 C 0.727 3.273 11 O -0.576 6.576 12 N -0.711 5.711 13 C 0.187 3.813 14 C 0.040 3.960 15 C -0.501 4.501 16 H 0.059 0.941 17 C 0.079 3.921 18 N -0.857 5.857 19 Si 0.886 3.114 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.283 1.283 23 C -0.198 4.198 24 C -0.213 4.213 25 H 0.064 0.936 26 H 0.004 0.996 27 H 0.054 0.946 28 H 0.351 0.649 29 H 0.022 0.978 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.391 0.609 38 H 0.019 0.981 39 H 0.104 0.896 40 H 0.261 0.739 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.039 9.562 8.433 13.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.289 5.289 3 C -0.081 4.081 4 C 0.055 3.945 5 H 0.083 0.917 6 C -0.165 4.165 7 C -0.168 4.168 8 C -0.023 4.023 9 N -0.374 5.374 10 C 0.429 3.571 11 O -0.453 6.453 12 N -0.363 5.363 13 C 0.063 3.937 14 C 0.040 3.960 15 C -0.539 4.539 16 H 0.078 0.922 17 C -0.127 4.127 18 N -0.492 5.492 19 Si 0.714 3.286 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.209 1.209 23 C -0.236 4.236 24 C -0.251 4.251 25 H 0.082 0.918 26 H 0.022 0.978 27 H 0.073 0.927 28 H 0.173 0.827 29 H 0.040 0.960 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.225 0.775 38 H 0.037 0.963 39 H 0.122 0.878 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.412 8.922 8.416 12.500 hybrid contribution -0.199 1.224 -0.319 1.281 sum 2.212 10.147 8.097 13.169 Atomic orbital electron populations 1.22144 0.89552 1.01363 0.98668 1.60619 1.05498 1.11229 1.51510 1.22432 0.94698 0.91464 0.99462 1.21240 0.92928 0.90577 0.89757 0.91730 1.22692 0.97815 0.95628 1.00376 1.22774 0.97662 0.98679 0.97688 1.22144 0.94864 0.91576 0.93683 1.47444 1.56066 1.08610 1.25285 1.15272 0.79229 0.79450 0.83111 1.90694 1.46825 1.60766 1.47017 1.44885 1.56491 1.16314 1.18605 1.20748 1.02509 0.78615 0.91814 1.19226 0.91911 0.90125 0.94777 1.20471 1.00084 1.25705 1.07618 0.92249 1.24947 0.95942 0.96363 0.95429 1.69872 1.00837 1.41844 1.36623 0.86630 0.78158 0.82247 0.81561 1.19762 1.21107 1.20927 1.22908 1.02544 0.98135 1.00040 1.22944 0.92358 1.09932 0.99825 0.91765 0.97768 0.92675 0.82718 0.95968 0.91591 0.90680 0.90435 0.90821 0.90289 0.91083 0.92154 0.77531 0.96295 0.87831 0.92839 0.91587 0.90368 0.90835 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.70 60.07 0.64 1.16 16 2 N -0.65 -11.68 3.85 -121.13 -0.47 -12.15 16 3 C 0.05 0.76 5.26 -3.83 -0.02 0.74 16 4 C 0.16 2.30 3.25 -66.95 -0.22 2.08 16 5 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 6 C -0.13 -1.32 6.50 -24.76 -0.16 -1.48 16 7 C -0.13 -1.36 7.09 -24.45 -0.17 -1.53 16 8 C 0.10 1.46 6.51 -2.53 -0.02 1.44 16 9 N -0.63 -11.03 3.06 -168.69 -0.52 -11.55 16 10 C 0.73 15.77 7.90 -86.92 -0.69 15.08 16 11 O -0.58 -13.68 12.87 5.29 0.07 -13.61 16 12 N -0.71 -16.03 5.23 -65.22 -0.34 -16.37 16 13 C 0.19 4.60 4.74 -4.04 -0.02 4.58 16 14 C 0.04 0.98 2.01 -155.66 -0.31 0.67 16 15 C -0.50 -13.02 8.26 -34.44 -0.28 -13.30 16 16 H 0.06 1.55 7.83 -52.48 -0.41 1.14 16 17 C 0.08 2.05 5.14 -17.82 -0.09 1.96 16 18 N -0.86 -23.41 10.71 55.43 0.59 -22.82 16 19 Si 0.89 20.35 29.55 -169.99 -5.02 15.33 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.20 -4.49 9.96 -26.70 -0.27 -4.76 16 24 C -0.21 -4.61 9.92 -26.70 -0.26 -4.88 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.35 6.39 7.48 -39.30 -0.29 6.10 16 29 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 1.05 8.07 -51.92 -0.42 0.63 16 31 H 0.07 0.75 7.80 -51.93 -0.40 0.34 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 1.01 7.45 -51.93 -0.39 0.63 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.39 8.59 6.49 -40.82 -0.26 8.33 16 38 H 0.02 0.47 8.06 -51.93 -0.42 0.05 16 39 H 0.10 2.91 6.04 -51.93 -0.31 2.60 16 40 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 41 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 42 H 0.08 1.78 8.14 -51.93 -0.42 1.35 16 43 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 44 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 347.20 15.07 5.23 5.23 Total: -1.00 -29.14 347.20 -9.87 -39.01 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -7.54 Total: 15.18 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -1.87 Total: 1.75 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: -0.73 Total: -62.89 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.07 Total: -13.61 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.14 -9.87 -39.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418120548.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.505 kcal (2) G-P(sol) polarization free energy of solvation -29.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds