Wall clock time and date at job start Tue Mar 31 2020 05:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46905 * 110.99877 * 2 1 4 4 C 1.52996 * 109.46767 * 66.04977 * 3 2 1 5 5 N 1.46497 * 109.47267 * 179.97438 * 4 3 2 6 6 C 1.34776 * 120.00194 * 180.02562 * 5 4 3 7 7 O 1.21582 * 120.00274 * 359.97438 * 6 5 4 8 8 N 1.34782 * 120.00034 * 180.02562 * 6 5 4 9 9 C 1.46495 * 120.00258 * 180.02562 * 8 6 5 10 10 C 1.52992 * 109.47269 * 184.79147 * 9 8 6 11 11 C 1.50694 * 115.55114 * 294.81128 * 10 9 8 12 12 H 1.08008 * 119.99906 * 95.20873 * 11 10 9 13 13 C 1.37875 * 120.00314 * 274.92789 * 11 10 9 14 14 N 1.31509 * 119.99913 * 355.42420 * 13 11 10 15 15 Si 1.86807 * 120.00040 * 175.41703 * 13 11 10 16 16 H 1.48494 * 109.47052 * 60.00642 * 15 13 11 17 17 H 1.48500 * 109.47055 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47106 * 300.00083 * 15 13 11 19 19 C 1.53003 * 117.49834 * 80.48431 * 10 9 8 20 20 C 1.53006 * 117.49908 * 149.14426 * 10 9 8 21 21 C 1.46906 * 110.99641 * 236.05249 * 2 1 3 22 22 C 1.52997 * 117.49836 * 7.69818 * 21 2 1 23 23 C 1.52993 * 117.49666 * 299.03687 * 21 2 1 24 24 H 1.08994 * 109.47671 * 59.99572 * 1 2 3 25 25 H 1.09001 * 109.47062 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47131 * 299.99561 * 1 2 3 27 27 H 1.08997 * 109.46959 * 306.05219 * 3 2 1 28 28 H 1.09000 * 109.46886 * 186.04665 * 3 2 1 29 29 H 1.09007 * 109.47402 * 59.99631 * 4 3 2 30 30 H 1.09003 * 109.47711 * 300.00021 * 4 3 2 31 31 H 0.97004 * 119.99607 * 0.02562 * 5 4 3 32 32 H 0.96999 * 119.99637 * 359.97438 * 8 6 5 33 33 H 1.09001 * 109.47395 * 64.78624 * 9 8 6 34 34 H 1.09007 * 109.47080 * 304.78945 * 9 8 6 35 35 H 0.97001 * 119.99960 * 184.99387 * 14 13 11 36 36 H 1.09003 * 117.50034 * 214.99852 * 19 10 9 37 37 H 1.09002 * 117.49971 * 0.02686 * 19 10 9 38 38 H 1.08996 * 117.49810 * 359.97342 * 20 10 9 39 39 H 1.08995 * 117.50078 * 144.97442 * 20 10 9 40 40 H 1.08997 * 115.54556 * 153.36622 * 21 2 1 41 41 H 1.08996 * 117.50335 * 0.02562 * 22 21 2 42 42 H 1.09004 * 117.49386 * 145.02370 * 22 21 2 43 43 H 1.09001 * 117.49785 * 214.97851 * 23 21 2 44 44 H 1.08998 * 117.50212 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0574 1.3183 5 7 2.1569 3.4249 1.3187 6 6 1.9565 4.2235 2.3856 7 8 1.3393 3.8093 3.3477 8 7 2.4395 5.4818 2.3857 9 6 2.2223 6.3498 3.5457 10 6 2.7617 7.7492 3.2437 11 6 4.2528 7.8427 3.0474 12 1 4.6699 7.8055 2.0518 13 6 5.0845 7.9815 4.1383 14 7 4.5727 8.1228 5.3415 15 14 6.9382 7.9687 3.9073 16 1 7.3330 9.0848 3.0110 17 1 7.6023 8.1330 5.2253 18 1 7.3527 6.6775 3.3023 19 6 1.8797 8.6818 2.4110 20 6 2.0611 8.9353 3.9097 21 6 1.9954 -0.7659 -1.1377 22 6 0.9929 -1.2525 -2.1861 23 6 1.6335 -2.2503 -1.2180 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.5610 1.9274 -0.8308 28 1 3.0797 1.3444 -0.1083 29 1 2.0658 1.5014 2.1492 30 1 0.5472 2.0844 1.4267 31 1 2.6490 3.7555 0.5509 32 1 2.9317 5.8124 1.6180 33 1 2.7433 5.9383 4.4102 34 1 1.1551 6.4101 3.7596 35 1 5.1542 8.2929 6.0990 36 1 2.3780 9.3629 1.7211 37 1 0.9149 8.2984 2.0787 38 1 1.2157 8.7186 4.5626 39 1 2.6789 9.7830 4.2061 40 1 2.9845 -0.4694 -1.4867 41 1 -0.0571 -1.0040 -2.0320 42 1 1.3227 -1.2765 -3.2248 43 1 2.3844 -2.9303 -1.6202 44 1 1.0052 -2.6587 -0.4264 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430691434.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:12 Heat of formation + Delta-G solvation = 28.541340 kcal Electronic energy + Delta-G solvation = -21724.603291 eV Core-core repulsion = 18485.892389 eV Total energy + Delta-G solvation = -3238.710902 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.59141 -39.02153 -36.79324 -35.42475 -33.43380 -33.09617 -31.94047 -28.85383 -26.89700 -25.88548 -24.87490 -22.77077 -22.04762 -21.15389 -20.56617 -20.10358 -19.36674 -17.71619 -17.08374 -16.27006 -15.91147 -15.49837 -15.21263 -14.74746 -14.51858 -14.20465 -13.87202 -13.76667 -13.33328 -13.13779 -12.67470 -12.59923 -12.22694 -11.97363 -11.82763 -11.70152 -11.56340 -11.22685 -11.02171 -10.96050 -10.93989 -10.67070 -10.53730 -10.21977 -9.72666 -9.44858 -9.02432 -8.82660 -8.49139 -8.46688 -8.22135 -7.96348 -6.05771 -4.15695 2.97275 3.27506 3.33775 3.34592 3.47100 3.79149 3.82158 4.35959 4.45365 4.58348 4.66047 4.74462 4.88519 4.93551 5.02210 5.22118 5.24840 5.29855 5.31539 5.40143 5.46858 5.54907 5.69857 5.77823 5.86965 5.98170 6.06253 6.36908 6.50063 6.60968 6.62816 6.70688 6.72515 6.82622 6.87557 7.14069 7.34171 7.43936 7.46907 7.63479 7.82281 8.35717 8.67259 8.85316 9.21654 9.51265 11.01434 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023837 B = 0.003017 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.376892 B = 9279.571752 C = 9915.304086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.506 5.506 3 C 0.046 3.954 4 C 0.144 3.856 5 N -0.755 5.755 6 C 0.699 3.301 7 O -0.603 6.603 8 N -0.721 5.721 9 C 0.182 3.818 10 C 0.025 3.975 11 C -0.501 4.501 12 H 0.059 0.941 13 C 0.073 3.927 14 N -0.874 5.874 15 Si 0.891 3.109 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.211 4.211 20 C -0.142 4.142 21 C 0.022 3.978 22 C -0.221 4.221 23 C -0.170 4.170 24 H 0.033 0.967 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.043 0.957 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.393 0.607 32 H 0.396 0.604 33 H 0.064 0.936 34 H 0.037 0.963 35 H 0.262 0.738 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.119 0.881 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.575 -14.495 -14.109 20.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.228 5.228 3 C -0.082 4.082 4 C 0.019 3.981 5 N -0.412 5.412 6 C 0.398 3.602 7 O -0.482 6.482 8 N -0.373 5.373 9 C 0.058 3.942 10 C 0.024 3.976 11 C -0.538 4.538 12 H 0.077 0.923 13 C -0.131 4.131 14 N -0.510 5.510 15 Si 0.719 3.281 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.248 4.248 20 C -0.180 4.180 21 C -0.088 4.088 22 C -0.260 4.260 23 C -0.208 4.208 24 H 0.052 0.948 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.061 0.939 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.226 0.774 32 H 0.230 0.770 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.137 0.863 41 H 0.118 0.882 42 H 0.112 0.888 43 H 0.116 0.884 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.939 -15.107 -12.500 20.487 hybrid contribution 1.237 0.711 -1.481 2.056 sum -4.702 -14.396 -13.980 20.611 Atomic orbital electron populations 1.22614 0.87075 1.02272 1.01459 1.61704 1.08141 1.12994 1.39957 1.22288 1.00884 0.88035 0.96956 1.20980 0.98963 0.81173 0.96972 1.44977 1.62388 1.13967 1.19883 1.15999 0.80263 0.81239 0.82660 1.90874 1.47320 1.75102 1.34928 1.45149 1.58706 1.11355 1.22101 1.20852 0.97268 0.89628 0.86418 1.19041 0.92986 0.86570 0.98987 1.20302 0.88550 1.52289 0.92683 0.92323 1.24987 0.98503 0.94412 0.95179 1.69976 1.35232 1.46862 0.98957 0.86686 0.85551 0.78568 0.77316 1.20338 1.21277 1.20173 1.23013 1.00298 1.06628 0.94901 1.22467 1.01059 1.02388 0.92101 1.22666 0.98446 0.95528 0.92115 1.23583 0.99838 1.06044 0.96492 1.23068 1.03676 0.92250 1.01807 0.94849 0.91153 0.90413 0.93909 0.89893 0.90961 0.91960 0.77423 0.77021 0.91723 0.94421 0.92803 0.90470 0.91750 0.91794 0.89522 0.86333 0.88187 0.88845 0.88448 0.88465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 7.95 60.06 0.48 0.59 16 2 N -0.51 -4.82 4.97 -234.89 -1.17 -5.98 16 3 C 0.05 0.44 5.05 -3.82 -0.02 0.42 16 4 C 0.14 1.84 5.60 -4.05 -0.02 1.81 16 5 N -0.75 -10.74 5.56 -65.22 -0.36 -11.10 16 6 C 0.70 13.55 8.57 -86.91 -0.74 12.81 16 7 O -0.60 -14.14 16.34 5.29 0.09 -14.06 16 8 N -0.72 -14.20 5.48 -65.23 -0.36 -14.55 16 9 C 0.18 4.20 5.50 -4.05 -0.02 4.18 16 10 C 0.02 0.59 1.47 -155.66 -0.23 0.36 16 11 C -0.50 -12.88 8.59 -34.44 -0.30 -13.17 16 12 H 0.06 1.47 7.82 -52.48 -0.41 1.06 16 13 C 0.07 1.95 5.43 -17.82 -0.10 1.85 16 14 N -0.87 -24.36 12.65 55.43 0.70 -23.66 16 15 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 C -0.21 -4.42 9.96 -26.69 -0.27 -4.69 16 20 C -0.14 -3.28 9.14 -26.69 -0.24 -3.52 16 21 C 0.02 0.18 6.11 -67.71 -0.41 -0.24 16 22 C -0.22 -1.53 9.51 -26.69 -0.25 -1.78 16 23 C -0.17 -1.22 9.99 -26.70 -0.27 -1.49 16 24 H 0.03 0.27 7.23 -51.93 -0.38 -0.11 16 25 H 0.07 0.54 6.63 -51.93 -0.34 0.20 16 26 H 0.08 0.72 6.47 -51.93 -0.34 0.38 16 27 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 28 H 0.08 0.74 7.96 -51.93 -0.41 0.33 16 29 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 30 H 0.06 0.83 6.55 -51.93 -0.34 0.49 16 31 H 0.39 4.43 8.49 -40.82 -0.35 4.09 16 32 H 0.40 7.04 8.34 -40.82 -0.34 6.70 16 33 H 0.06 1.70 8.14 -51.93 -0.42 1.28 16 34 H 0.04 0.87 8.09 -51.92 -0.42 0.45 16 35 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 36 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.09 2.14 8.14 -51.93 -0.42 1.71 16 40 H 0.12 0.87 7.93 -51.93 -0.41 0.46 16 41 H 0.10 0.69 5.90 -51.93 -0.31 0.39 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.10 0.73 7.56 -51.93 -0.39 0.34 16 LS Contribution 359.28 15.07 5.41 5.41 Total: -1.00 -30.56 359.28 -10.48 -41.05 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -7.38 Total: 10.18 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -2.40 Total: -2.86 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: -1.19 Total: -55.30 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.09 Total: -14.06 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.56 -10.48 -41.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430691434.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.588 kcal (2) G-P(sol) polarization free energy of solvation -30.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds