Wall clock time and date at job start Tue Mar 31 2020 05:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47221 * 2 1 4 4 C 1.53001 * 112.90846 * 294.29182 * 3 2 1 5 5 C 1.52999 * 109.46954 * 314.83983 * 4 3 2 6 6 C 1.53778 * 113.61818 * 65.54590 * 3 2 1 7 7 H 1.09001 * 113.68696 * 334.56014 * 6 3 2 8 8 N 1.46891 * 113.61656 * 203.66485 * 6 3 2 9 9 C 1.46908 * 110.99963 * 157.99239 * 8 6 3 10 10 C 1.53003 * 109.46971 * 184.77615 * 9 8 6 11 11 C 1.50692 * 115.55292 * 300.86452 * 10 9 8 12 12 H 1.08007 * 120.00013 * 95.07699 * 11 10 9 13 13 C 1.37880 * 120.00530 * 275.07583 * 11 10 9 14 14 N 1.31511 * 119.99505 * 5.68827 * 13 11 10 15 15 Si 1.86794 * 120.00306 * 185.69181 * 13 11 10 16 16 H 1.48501 * 109.47006 * 179.97438 * 15 13 11 17 17 H 1.48496 * 109.47407 * 300.00292 * 15 13 11 18 18 H 1.48504 * 109.46818 * 59.99969 * 15 13 11 19 19 C 1.53001 * 117.49404 * 86.53995 * 10 9 8 20 20 C 1.52999 * 117.49384 * 155.19435 * 10 9 8 21 21 C 1.53785 * 87.08241 * 89.11596 * 6 3 2 22 22 C 1.53780 * 87.07965 * 25.43352 * 21 6 3 23 23 H 1.09003 * 113.61530 * 89.20129 * 22 21 6 24 24 O 1.42903 * 113.61488 * 220.01962 * 22 21 6 25 25 C 1.42905 * 113.99725 * 250.49663 * 24 22 21 26 26 H 1.09003 * 109.46639 * 304.88781 * 1 2 3 27 27 H 1.08993 * 109.47110 * 64.88816 * 1 2 3 28 28 H 1.09001 * 109.46932 * 184.89470 * 1 2 3 29 29 H 1.09002 * 109.47154 * 239.99501 * 2 1 3 30 30 H 1.09000 * 109.47153 * 120.00203 * 2 1 3 31 31 H 1.09000 * 109.46659 * 74.83615 * 4 3 2 32 32 H 1.08992 * 109.47426 * 194.83571 * 4 3 2 33 33 H 1.09000 * 109.46947 * 185.53789 * 5 4 3 34 34 H 1.09001 * 109.47280 * 305.53345 * 5 4 3 35 35 H 1.08999 * 109.47790 * 65.53863 * 5 4 3 36 36 H 1.00901 * 111.00390 * 34.04763 * 8 6 3 37 37 H 1.09004 * 109.46592 * 64.78587 * 9 8 6 38 38 H 1.08995 * 109.47160 * 304.78437 * 9 8 6 39 39 H 0.97005 * 120.00422 * 355.12887 * 14 13 11 40 40 H 1.09005 * 117.49737 * 214.99966 * 19 10 9 41 41 H 1.09003 * 117.50040 * 0.02562 * 19 10 9 42 42 H 1.09006 * 117.50054 * 359.97438 * 20 10 9 43 43 H 1.09007 * 117.49694 * 145.00066 * 20 10 9 44 44 H 1.08996 * 113.61192 * 139.98464 * 21 6 3 45 45 H 1.09000 * 113.61234 * 270.89034 * 21 6 3 46 46 H 1.09000 * 109.47169 * 59.99407 * 25 24 22 47 47 H 1.08990 * 109.47078 * 180.02562 * 25 24 22 48 48 H 1.09003 * 109.46907 * 300.00204 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6919 2.1972 -1.2846 5 6 1.9890 1.3090 -2.4944 6 6 1.6955 2.2177 1.2826 7 1 0.8131 1.8398 1.7990 8 7 1.6693 3.6751 1.1002 9 6 0.8596 4.3215 2.1417 10 6 0.7577 5.8203 1.8515 11 6 2.0685 6.5609 1.7890 12 1 2.5520 6.7235 0.8369 13 6 2.6508 7.0310 2.9470 14 7 2.1220 6.7376 4.1148 15 14 4.1906 8.0847 2.8571 16 1 4.6146 8.4597 4.2300 17 1 5.2767 7.3186 2.1949 18 1 3.9041 9.3141 2.0749 19 6 -0.3613 6.2843 0.9168 20 6 -0.4504 6.5689 2.4182 21 6 3.0200 1.6931 1.8616 22 6 3.5161 1.5740 0.4109 23 1 3.9957 2.4789 0.0377 24 8 4.2861 0.3957 0.1642 25 6 5.6768 0.6447 -0.0508 26 1 -0.3633 0.5878 0.8430 27 1 -0.3633 0.4361 -0.9305 28 1 -0.3633 -1.0239 0.0877 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.6338 2.4587 -1.2769 32 1 2.2903 3.1062 -1.3454 33 1 1.8348 1.8793 -3.4104 34 1 3.0230 0.9671 -2.4490 35 1 1.3209 0.4478 -2.4858 36 1 1.3352 3.9184 0.1797 37 1 1.3301 4.1708 3.1134 38 1 -0.1387 3.8841 2.1496 39 1 1.2841 6.2508 4.1594 40 1 -0.1492 7.1253 0.2566 41 1 -1.0250 5.5218 0.5090 42 1 -1.1727 5.9935 2.9974 43 1 -0.2969 7.5972 2.7458 44 1 3.5630 2.4332 2.4494 45 1 2.9245 0.7340 2.3706 46 1 6.1000 1.1270 0.8302 47 1 6.1912 -0.2991 -0.2313 48 1 5.7996 1.2963 -0.9160 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430739563.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:00 Heat of formation + Delta-G solvation = -15.136010 kcal Electronic energy + Delta-G solvation = -23963.294803 eV Core-core repulsion = 20826.230253 eV Total energy + Delta-G solvation = -3137.064551 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.41230 -37.20214 -36.45781 -33.79210 -31.94019 -31.66788 -31.06417 -26.83525 -25.71198 -25.26184 -24.41519 -23.29035 -22.67520 -21.27002 -20.81970 -19.30789 -17.67278 -16.64552 -16.59445 -15.80517 -15.41628 -14.96033 -14.52111 -14.17787 -13.67735 -13.56831 -13.45727 -13.44019 -13.01108 -12.85041 -12.40054 -12.22681 -12.14293 -11.93272 -11.84840 -11.57932 -11.38720 -11.08578 -11.02424 -10.82042 -10.72856 -10.71389 -10.43916 -10.26817 -10.10840 -10.05551 -9.80805 -9.42623 -9.06540 -8.46487 -8.36816 -8.22160 -7.57981 -6.22671 -3.92774 3.48642 3.50137 3.68512 3.96168 4.50508 4.59554 4.64773 4.76486 5.06297 5.14722 5.16019 5.26161 5.37215 5.38263 5.42581 5.45092 5.46973 5.53581 5.63633 5.69486 5.72479 5.80852 5.84203 5.97616 5.99686 6.01471 6.07459 6.15098 6.18774 6.21110 6.30533 6.34271 6.38254 6.41666 6.44209 6.56882 6.59135 6.64920 6.76175 6.90501 7.26768 7.34886 7.44732 7.90196 8.11687 8.40153 8.54331 8.99964 9.78950 11.17262 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016260 B = 0.005575 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.598392 B = 5020.857682 C = 5892.055263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.089 4.089 3 C -0.074 4.074 4 C -0.113 4.113 5 C -0.146 4.146 6 C 0.072 3.928 7 H 0.054 0.946 8 N -0.647 5.647 9 C 0.106 3.894 10 C 0.027 3.973 11 C -0.546 4.546 12 H 0.051 0.949 13 C 0.025 3.975 14 N -0.913 5.913 15 Si 1.065 2.935 16 H -0.285 1.285 17 H -0.289 1.289 18 H -0.291 1.291 19 C -0.202 4.202 20 C -0.180 4.180 21 C -0.149 4.149 22 C 0.082 3.918 23 H 0.093 0.907 24 O -0.380 6.380 25 C 0.032 3.968 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.338 0.662 37 H 0.067 0.933 38 H -0.004 1.004 39 H 0.272 0.728 40 H 0.079 0.921 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.040 0.960 47 H 0.078 0.922 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.260 -12.737 -9.267 15.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.127 4.127 3 C -0.075 4.075 4 C -0.151 4.151 5 C -0.204 4.204 6 C -0.039 4.039 7 H 0.072 0.928 8 N -0.279 5.279 9 C -0.023 4.023 10 C 0.026 3.974 11 C -0.584 4.584 12 H 0.069 0.931 13 C -0.179 4.179 14 N -0.548 5.548 15 Si 0.894 3.106 16 H -0.211 1.211 17 H -0.216 1.216 18 H -0.217 1.217 19 C -0.239 4.239 20 C -0.219 4.219 21 C -0.187 4.187 22 C 0.024 3.976 23 H 0.111 0.889 24 O -0.299 6.299 25 C -0.065 4.065 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.158 0.842 37 H 0.085 0.915 38 H 0.014 0.986 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.102 0.898 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.059 0.941 47 H 0.096 0.904 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.919 -12.038 -8.000 14.581 hybrid contribution -1.960 -0.672 -1.139 2.364 sum -0.041 -12.709 -9.139 15.654 Atomic orbital electron populations 1.21818 0.96341 1.01092 1.01839 1.21133 0.94759 0.94230 1.02572 1.22419 0.94719 0.95812 0.94579 1.21452 1.01382 0.98719 0.93537 1.21757 1.01727 0.99620 0.97256 1.22496 0.96585 0.89216 0.95625 0.92786 1.60203 1.57649 1.03655 1.06421 1.21622 0.91389 0.94280 0.95048 1.19170 0.90217 0.90546 0.97448 1.21071 1.05001 1.36973 0.95392 0.93127 1.25646 1.02904 0.97049 0.92321 1.70728 1.19883 1.38800 1.25411 0.83604 0.75438 0.75942 0.75607 1.21055 1.21573 1.21743 1.22898 1.05137 1.02861 0.93031 1.22755 1.02893 1.01651 0.94566 1.23511 0.97673 1.00685 0.96871 1.23821 0.90141 0.87659 0.95934 0.88933 1.87875 1.18575 1.31756 1.91686 1.22706 0.82931 1.01318 0.99566 0.92772 0.92832 0.93086 0.91196 0.91726 0.92059 0.90876 0.93302 0.92615 0.92745 0.84180 0.91455 0.98585 0.91635 0.90238 0.91995 0.91798 0.89796 0.90285 0.90174 0.94120 0.90364 0.94343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.53 37.16 0.35 -1.37 16 2 C -0.09 -1.09 4.05 -26.73 -0.11 -1.20 16 3 C -0.07 -1.02 0.59 -153.70 -0.09 -1.11 16 4 C -0.11 -1.47 3.64 -26.73 -0.10 -1.57 16 5 C -0.15 -1.63 8.96 37.16 0.33 -1.30 16 6 C 0.07 1.16 3.49 -66.90 -0.23 0.93 16 7 H 0.05 0.89 6.39 -51.93 -0.33 0.56 16 8 N -0.65 -12.44 6.15 -105.86 -0.65 -13.09 16 9 C 0.11 2.31 5.41 -3.82 -0.02 2.29 16 10 C 0.03 0.65 1.07 -155.66 -0.17 0.48 16 11 C -0.55 -14.85 8.62 -34.44 -0.30 -15.15 16 12 H 0.05 1.41 7.82 -52.48 -0.41 1.00 16 13 C 0.03 0.71 5.39 -17.82 -0.10 0.61 16 14 N -0.91 -26.91 13.57 55.43 0.75 -26.16 16 15 Si 1.06 25.23 29.91 -169.99 -5.08 20.15 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 C -0.20 -4.33 9.94 -26.69 -0.27 -4.59 16 20 C -0.18 -4.15 8.64 -26.70 -0.23 -4.38 16 21 C -0.15 -2.40 7.36 -25.92 -0.19 -2.59 16 22 C 0.08 1.21 3.63 -25.92 -0.09 1.12 16 23 H 0.09 1.48 7.67 -51.93 -0.40 1.08 16 24 O -0.38 -5.32 9.90 -35.23 -0.35 -5.67 16 25 C 0.03 0.36 10.86 101.05 1.10 1.46 16 26 H 0.05 0.66 6.62 -51.93 -0.34 0.31 16 27 H 0.05 0.58 7.12 -51.93 -0.37 0.21 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.83 6.45 -51.93 -0.33 0.50 16 30 H 0.06 0.83 7.30 -51.93 -0.38 0.46 16 31 H 0.06 0.80 7.65 -51.93 -0.40 0.40 16 32 H 0.07 1.04 7.16 -51.93 -0.37 0.67 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.57 6.42 -51.93 -0.33 0.23 16 36 H 0.34 6.25 6.26 -39.29 -0.25 6.00 16 37 H 0.07 1.65 7.90 -51.93 -0.41 1.24 16 38 H 0.00 -0.08 7.99 -51.93 -0.42 -0.50 16 39 H 0.27 7.96 6.20 -40.82 -0.25 7.71 16 40 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.08 2.07 8.14 -51.93 -0.42 1.65 16 44 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 45 H 0.08 1.20 7.61 -51.93 -0.40 0.81 16 46 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 368.15 15.07 5.55 5.55 Total: -1.00 -28.65 368.15 -8.73 -37.37 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -8.84 Total: 8.22 kcal Atomic # 6 Polarization: -26.28 SS G_CDS: -0.11 Total: -26.38 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.10 Total: -39.25 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.35 Total: -5.67 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.08 Total: 20.15 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.65 -8.73 -37.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430739563.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.237 kcal (2) G-P(sol) polarization free energy of solvation -28.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds