Wall clock time and date at job start Tue Mar 31 2020 05:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47221 * 2 1 4 4 C 1.53001 * 112.90846 * 294.29182 * 3 2 1 5 5 C 1.52999 * 109.46954 * 314.83983 * 4 3 2 6 6 C 1.53778 * 113.61818 * 65.54590 * 3 2 1 7 7 H 1.09001 * 113.68696 * 334.56014 * 6 3 2 8 8 N 1.46891 * 113.61656 * 203.66485 * 6 3 2 9 9 C 1.46908 * 110.99963 * 157.99239 * 8 6 3 10 10 C 1.53003 * 109.46971 * 184.77615 * 9 8 6 11 11 C 1.50692 * 115.55292 * 300.86452 * 10 9 8 12 12 H 1.08007 * 120.00013 * 95.07699 * 11 10 9 13 13 C 1.37880 * 120.00530 * 275.07583 * 11 10 9 14 14 N 1.31511 * 119.99505 * 5.68827 * 13 11 10 15 15 Si 1.86794 * 120.00306 * 185.69181 * 13 11 10 16 16 H 1.48501 * 109.47006 * 179.97438 * 15 13 11 17 17 H 1.48496 * 109.47407 * 300.00292 * 15 13 11 18 18 H 1.48504 * 109.46818 * 59.99969 * 15 13 11 19 19 C 1.53001 * 117.49404 * 86.53995 * 10 9 8 20 20 C 1.52999 * 117.49384 * 155.19435 * 10 9 8 21 21 C 1.53785 * 87.08241 * 89.11596 * 6 3 2 22 22 C 1.53780 * 87.07965 * 25.43352 * 21 6 3 23 23 H 1.09003 * 113.61530 * 89.20129 * 22 21 6 24 24 O 1.42903 * 113.61488 * 220.01962 * 22 21 6 25 25 C 1.42905 * 113.99725 * 250.49663 * 24 22 21 26 26 H 1.09003 * 109.46639 * 304.88781 * 1 2 3 27 27 H 1.08993 * 109.47110 * 64.88816 * 1 2 3 28 28 H 1.09001 * 109.46932 * 184.89470 * 1 2 3 29 29 H 1.09002 * 109.47154 * 239.99501 * 2 1 3 30 30 H 1.09000 * 109.47153 * 120.00203 * 2 1 3 31 31 H 1.09000 * 109.46659 * 74.83615 * 4 3 2 32 32 H 1.08992 * 109.47426 * 194.83571 * 4 3 2 33 33 H 1.09000 * 109.46947 * 185.53789 * 5 4 3 34 34 H 1.09001 * 109.47280 * 305.53345 * 5 4 3 35 35 H 1.08999 * 109.47790 * 65.53863 * 5 4 3 36 36 H 1.00901 * 111.00390 * 34.04763 * 8 6 3 37 37 H 1.09004 * 109.46592 * 64.78587 * 9 8 6 38 38 H 1.08995 * 109.47160 * 304.78437 * 9 8 6 39 39 H 0.97005 * 120.00422 * 355.12887 * 14 13 11 40 40 H 1.09005 * 117.49737 * 214.99966 * 19 10 9 41 41 H 1.09003 * 117.50040 * 0.02562 * 19 10 9 42 42 H 1.09006 * 117.50054 * 359.97438 * 20 10 9 43 43 H 1.09007 * 117.49694 * 145.00066 * 20 10 9 44 44 H 1.08996 * 113.61192 * 139.98464 * 21 6 3 45 45 H 1.09000 * 113.61234 * 270.89034 * 21 6 3 46 46 H 1.09000 * 109.47169 * 59.99407 * 25 24 22 47 47 H 1.08990 * 109.47078 * 180.02562 * 25 24 22 48 48 H 1.09003 * 109.46907 * 300.00204 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6919 2.1972 -1.2846 5 6 1.9890 1.3090 -2.4944 6 6 1.6955 2.2177 1.2826 7 1 0.8131 1.8398 1.7990 8 7 1.6693 3.6751 1.1002 9 6 0.8596 4.3215 2.1417 10 6 0.7577 5.8203 1.8515 11 6 2.0685 6.5609 1.7890 12 1 2.5520 6.7235 0.8369 13 6 2.6508 7.0310 2.9470 14 7 2.1220 6.7376 4.1148 15 14 4.1906 8.0847 2.8571 16 1 4.6146 8.4597 4.2300 17 1 5.2767 7.3186 2.1949 18 1 3.9041 9.3141 2.0749 19 6 -0.3613 6.2843 0.9168 20 6 -0.4504 6.5689 2.4182 21 6 3.0200 1.6931 1.8616 22 6 3.5161 1.5740 0.4109 23 1 3.9957 2.4789 0.0377 24 8 4.2861 0.3957 0.1642 25 6 5.6768 0.6447 -0.0508 26 1 -0.3633 0.5878 0.8430 27 1 -0.3633 0.4361 -0.9305 28 1 -0.3633 -1.0239 0.0877 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.6338 2.4587 -1.2769 32 1 2.2903 3.1062 -1.3454 33 1 1.8348 1.8793 -3.4104 34 1 3.0230 0.9671 -2.4490 35 1 1.3209 0.4478 -2.4858 36 1 1.3352 3.9184 0.1797 37 1 1.3301 4.1708 3.1134 38 1 -0.1387 3.8841 2.1496 39 1 1.2841 6.2508 4.1594 40 1 -0.1492 7.1253 0.2566 41 1 -1.0250 5.5218 0.5090 42 1 -1.1727 5.9935 2.9974 43 1 -0.2969 7.5972 2.7458 44 1 3.5630 2.4332 2.4494 45 1 2.9245 0.7340 2.3706 46 1 6.1000 1.1270 0.8302 47 1 6.1912 -0.2991 -0.2313 48 1 5.7996 1.2963 -0.9160 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430739563.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:59 Heat of formation + Delta-G solvation = -30.889883 kcal Electronic energy + Delta-G solvation = -23963.977943 eV Core-core repulsion = 20826.230253 eV Total energy + Delta-G solvation = -3137.747690 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.62303 -38.95476 -37.62916 -35.09392 -33.87037 -33.12851 -32.07021 -27.96657 -27.20180 -26.72731 -26.10472 -24.34568 -23.95580 -23.03070 -22.03000 -21.24988 -18.97631 -18.41108 -17.81673 -17.04494 -16.62110 -16.09673 -16.06667 -15.61068 -15.25695 -15.04305 -14.95473 -14.79201 -14.33670 -14.15181 -13.79415 -13.49385 -13.33300 -13.28528 -13.18627 -12.75353 -12.64202 -12.59926 -12.54109 -12.23210 -12.14409 -12.03417 -11.95399 -11.73591 -11.50493 -11.30027 -11.18922 -10.92977 -10.42769 -10.37747 -10.22182 -10.16652 -9.12260 -8.43302 -6.12828 1.54515 1.61715 1.79926 2.62761 2.86915 3.08161 3.32871 3.40148 3.47596 3.58319 3.90467 3.98610 4.11329 4.21974 4.32716 4.35439 4.40777 4.45835 4.52366 4.53098 4.54931 4.57483 4.58388 4.63805 4.74585 4.80745 4.82674 4.84180 4.86247 4.94933 5.05528 5.07888 5.08591 5.11019 5.13687 5.26261 5.35600 5.39302 5.44621 5.47761 5.56059 5.61025 6.21010 6.30706 6.35218 6.42282 6.65985 6.83230 7.64894 8.97686 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016260 B = 0.005575 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.598392 B = 5020.857682 C = 5892.055263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.084 4.084 3 C -0.058 4.058 4 C -0.112 4.112 5 C -0.140 4.140 6 C 0.067 3.933 7 H 0.055 0.945 8 N -0.657 5.657 9 C 0.122 3.878 10 C -0.002 4.002 11 C -0.549 4.549 12 H 0.039 0.961 13 C -0.023 4.023 14 N -0.940 5.940 15 Si 1.105 2.895 16 H -0.289 1.289 17 H -0.278 1.278 18 H -0.275 1.275 19 C -0.174 4.174 20 C -0.184 4.184 21 C -0.152 4.152 22 C 0.088 3.912 23 H 0.077 0.923 24 O -0.385 6.385 25 C 0.025 3.975 26 H 0.041 0.959 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.343 0.657 37 H 0.031 0.969 38 H 0.012 0.988 39 H 0.263 0.737 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.046 0.954 45 H 0.091 0.909 46 H 0.034 0.966 47 H 0.103 0.897 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.112 -14.083 -11.267 18.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.122 4.122 3 C -0.059 4.059 4 C -0.150 4.150 5 C -0.197 4.197 6 C -0.044 4.044 7 H 0.073 0.927 8 N -0.289 5.289 9 C -0.007 4.007 10 C -0.002 4.002 11 C -0.587 4.587 12 H 0.057 0.943 13 C -0.221 4.221 14 N -0.578 5.578 15 Si 0.929 3.071 16 H -0.215 1.215 17 H -0.204 1.204 18 H -0.200 1.200 19 C -0.211 4.211 20 C -0.223 4.223 21 C -0.191 4.191 22 C 0.031 3.969 23 H 0.095 0.905 24 O -0.304 6.304 25 C -0.071 4.071 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.164 0.836 37 H 0.049 0.951 38 H 0.029 0.971 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.097 0.903 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.109 0.891 46 H 0.053 0.947 47 H 0.121 0.879 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.543 -13.392 -10.027 16.801 hybrid contribution -1.822 -0.281 -0.531 1.919 sum -0.279 -13.673 -10.558 17.277 Atomic orbital electron populations 1.21791 0.95277 1.02006 1.01673 1.21118 0.95599 0.92763 1.02726 1.22320 0.93429 0.96489 0.93626 1.21424 1.01239 0.98387 0.93912 1.21705 1.01708 0.99699 0.96604 1.22523 0.96465 0.87747 0.97645 0.92713 1.60067 1.57328 1.05551 1.05978 1.21261 0.92034 0.93324 0.94085 1.19240 0.89623 0.91464 0.99903 1.21319 1.06216 1.36583 0.94630 0.94271 1.26816 1.05239 0.97906 0.92171 1.70828 1.20230 1.40473 1.26249 0.83076 0.73040 0.75394 0.75589 1.21534 1.20413 1.20012 1.22897 1.03395 1.02960 0.91869 1.22674 1.02923 1.00394 0.96279 1.23533 0.97665 1.00269 0.97607 1.23619 0.91087 0.87557 0.94680 0.90490 1.87855 1.19787 1.31115 1.91631 1.22899 0.81714 1.02891 0.99594 0.93953 0.92132 0.91497 0.90177 0.92397 0.91689 0.92478 0.92272 0.93036 0.91567 0.83575 0.95075 0.97051 0.92646 0.90372 0.88959 0.90253 0.92213 0.93484 0.89072 0.94705 0.87885 0.93692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.53 71.98 0.69 -2.29 16 2 C -0.08 -1.87 4.05 30.59 0.12 -1.75 16 3 C -0.06 -1.50 0.59 -51.66 -0.03 -1.53 16 4 C -0.11 -2.70 3.64 30.59 0.11 -2.59 16 5 C -0.14 -2.74 8.96 71.98 0.64 -2.10 16 6 C 0.07 2.15 3.49 45.44 0.16 2.31 16 7 H 0.06 1.77 6.39 -2.39 -0.02 1.76 16 8 N -0.66 -25.30 6.15 -488.84 -3.01 -28.31 16 9 C 0.12 5.40 5.41 86.30 0.47 5.86 16 10 C 0.00 -0.08 1.07 -52.93 -0.06 -0.13 16 11 C -0.55 -30.24 8.62 25.60 0.22 -30.02 16 12 H 0.04 2.19 7.82 -2.91 -0.02 2.17 16 13 C -0.02 -1.28 5.39 84.66 0.46 -0.83 16 14 N -0.94 -56.90 13.57 21.45 0.29 -56.61 16 15 Si 1.10 51.38 29.91 68.60 2.05 53.43 16 16 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 17 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 C -0.17 -7.17 9.94 30.62 0.30 -6.86 16 20 C -0.18 -8.45 8.64 30.62 0.26 -8.19 16 21 C -0.15 -4.99 7.36 31.12 0.23 -4.76 16 22 C 0.09 2.58 3.63 31.12 0.11 2.69 16 23 H 0.08 2.48 7.67 -2.39 -0.02 2.47 16 24 O -0.39 -10.25 9.90 -148.98 -1.48 -11.72 16 25 C 0.03 0.54 10.86 113.37 1.23 1.77 16 26 H 0.04 0.94 6.62 -2.39 -0.02 0.92 16 27 H 0.06 1.12 7.12 -2.39 -0.02 1.10 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.08 1.66 6.45 -2.39 -0.02 1.64 16 30 H 0.06 1.38 7.30 -2.39 -0.02 1.36 16 31 H 0.06 1.53 7.65 -2.39 -0.02 1.51 16 32 H 0.06 1.56 7.16 -2.39 -0.02 1.55 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.15 6.42 -2.39 -0.02 1.14 16 36 H 0.34 12.45 6.26 -89.69 -0.56 11.89 16 37 H 0.03 1.58 7.90 -2.38 -0.02 1.56 16 38 H 0.01 0.47 7.99 -2.39 -0.02 0.45 16 39 H 0.26 15.91 6.20 -92.70 -0.57 15.33 16 40 H 0.08 3.24 8.14 -2.38 -0.02 3.22 16 41 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 42 H 0.08 3.34 8.14 -2.38 -0.02 3.32 16 43 H 0.06 3.00 8.14 -2.38 -0.02 2.98 16 44 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.09 2.74 7.61 -2.39 -0.02 2.72 16 46 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -62.10 368.15 3.33 -58.77 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: 0.54 Total: 32.85 kcal Atomic # 6 Polarization: -53.33 SS G_CDS: 4.92 Total: -48.41 kcal Atomic # 7 Polarization: -82.20 SS G_CDS: -2.71 Total: -84.91 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: -1.48 Total: -11.72 kcal Atomic # 14 Polarization: 51.38 SS G_CDS: 2.05 Total: 53.43 kcal Total: -62.10 3.33 -58.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430739563.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.879 kcal (2) G-P(sol) polarization free energy of solvation -62.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds