Wall clock time and date at job start Tue Mar 31 2020 05:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47066 * 2 1 4 4 C 1.53004 * 112.90818 * 53.14643 * 3 2 1 5 5 C 1.52993 * 109.47177 * 64.91736 * 4 3 2 6 6 C 1.53779 * 113.61390 * 184.39784 * 3 2 1 7 7 H 1.09001 * 113.68918 * 334.55175 * 6 3 2 8 8 N 1.46901 * 113.61137 * 203.66457 * 6 3 2 9 9 C 1.46905 * 110.99779 * 176.14479 * 8 6 3 10 10 C 1.52997 * 109.47058 * 179.39339 * 9 8 6 11 11 C 1.50705 * 115.55704 * 273.25925 * 10 9 8 12 12 H 1.08007 * 119.99438 * 143.35078 * 11 10 9 13 13 C 1.37875 * 120.00490 * 323.34870 * 11 10 9 14 14 N 1.31516 * 119.99612 * 340.01235 * 13 11 10 15 15 Si 1.86796 * 120.00263 * 160.00850 * 13 11 10 16 16 H 1.48503 * 109.47073 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47035 * 120.00083 * 15 13 11 18 18 H 1.48498 * 109.47035 * 240.00346 * 15 13 11 19 19 C 1.52992 * 117.50431 * 58.95000 * 10 9 8 20 20 C 1.53001 * 60.00351 * 107.49173 * 19 10 9 21 21 C 1.53783 * 87.08283 * 89.11474 * 6 3 2 22 22 C 1.53776 * 113.61451 * 281.89333 * 3 2 1 23 23 H 1.09008 * 113.61481 * 25.43442 * 22 3 2 24 24 O 1.42899 * 113.61482 * 156.33536 * 22 3 2 25 25 C 1.42908 * 113.99836 * 207.00393 * 24 22 3 26 26 H 1.08993 * 109.47037 * 173.73358 * 1 2 3 27 27 H 1.09000 * 109.47234 * 293.73650 * 1 2 3 28 28 H 1.08999 * 109.46913 * 53.73257 * 1 2 3 29 29 H 1.08993 * 109.47347 * 239.99907 * 2 1 3 30 30 H 1.08997 * 109.47194 * 119.99866 * 2 1 3 31 31 H 1.08996 * 109.46813 * 184.92531 * 4 3 2 32 32 H 1.09001 * 109.46892 * 304.91890 * 4 3 2 33 33 H 1.08996 * 109.47472 * 301.76208 * 5 4 3 34 34 H 1.09001 * 109.47435 * 61.76531 * 5 4 3 35 35 H 1.08997 * 109.47150 * 181.76111 * 5 4 3 36 36 H 1.00897 * 111.00403 * 52.19530 * 8 6 3 37 37 H 1.08997 * 109.46993 * 59.38955 * 9 8 6 38 38 H 1.08998 * 109.47140 * 299.38614 * 9 8 6 39 39 H 0.97000 * 120.00191 * 185.06124 * 14 13 11 40 40 H 1.09005 * 117.49937 * 359.97438 * 19 10 9 41 41 H 1.09005 * 117.50555 * 214.98105 * 19 10 9 42 42 H 1.08994 * 117.49621 * 107.48840 * 20 19 10 43 43 H 1.09000 * 117.49832 * 252.49321 * 20 19 10 44 44 H 1.09001 * 113.60994 * 139.97804 * 21 6 3 45 45 H 1.08996 * 113.61115 * 270.88623 * 21 6 3 46 46 H 1.08997 * 109.46790 * 180.02562 * 25 24 22 47 47 H 1.09001 * 109.47034 * 299.99594 * 25 24 22 48 48 H 1.08994 * 109.47244 * 60.00184 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4416 2.2858 1.1277 5 6 1.9053 1.7350 2.4776 6 6 3.5699 1.5551 -0.1080 7 1 4.1007 0.6775 0.2611 8 7 4.1066 2.8134 0.4272 9 6 5.5748 2.8221 0.3792 10 6 6.0952 4.1515 0.9295 11 6 6.1997 5.2732 -0.0715 12 1 5.9723 6.2861 0.2269 13 6 6.5856 5.0067 -1.3680 14 7 7.2294 3.8943 -1.6468 15 14 6.1941 6.2254 -2.7284 16 1 5.4689 7.3887 -2.1572 17 1 7.4575 6.6897 -3.3557 18 1 5.3451 5.5670 -3.7535 19 6 5.7153 4.5190 2.3652 20 6 7.1481 4.0935 2.0381 21 6 3.3827 1.5649 -1.6344 22 6 1.9716 2.1201 -1.3787 23 1 1.2107 1.6981 -2.0354 24 8 1.9208 3.5467 -1.3136 25 6 1.2697 4.1567 -2.4299 26 1 -0.3633 -1.0215 -0.1122 27 1 -0.3634 0.4137 0.9407 28 1 -0.3633 0.6079 -0.8286 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.7726 3.3191 1.0237 32 1 0.3537 2.2457 1.0733 33 1 1.6013 0.6923 2.5684 34 1 2.9911 1.8041 2.5446 35 1 1.4541 2.3164 3.2817 36 1 3.7746 2.9781 1.3656 37 1 5.9053 2.7016 -0.6525 38 1 5.9630 2.0021 0.9832 39 1 7.5653 3.7401 -2.5436 40 1 5.0942 3.8138 2.9177 41 1 5.5409 5.5721 2.5860 42 1 7.9163 4.8668 2.0435 43 1 7.4701 3.1085 2.3758 44 1 4.0403 2.2645 -2.1504 45 1 3.3864 0.5707 -2.0811 46 1 1.2731 5.2396 -2.3052 47 1 1.7985 3.8953 -3.3464 48 1 0.2412 3.8008 -2.4896 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430739565.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:02 Heat of formation + Delta-G solvation = 1.449545 kcal Electronic energy + Delta-G solvation = -24533.748997 eV Core-core repulsion = 21397.403650 eV Total energy + Delta-G solvation = -3136.345347 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.25460 -36.81676 -36.09568 -33.44571 -32.05604 -31.91018 -30.63691 -26.43578 -25.69264 -25.32164 -24.46839 -23.60213 -22.26062 -21.04308 -20.45728 -18.78399 -17.64476 -16.40510 -16.16156 -15.65040 -15.07953 -14.72775 -14.55786 -14.15126 -14.01461 -13.63280 -13.43176 -13.00322 -12.81183 -12.59879 -12.45326 -12.13106 -11.83563 -11.71466 -11.55363 -11.20948 -11.09369 -11.01977 -10.89221 -10.82492 -10.61961 -10.45810 -10.36018 -10.12934 -10.10152 -9.70268 -9.64099 -9.01392 -8.98992 -8.83911 -8.57358 -7.87500 -7.18053 -5.94793 -3.87352 3.36141 3.44680 3.51196 4.07015 4.50860 4.57492 4.91291 5.07822 5.13950 5.21285 5.25879 5.35043 5.39657 5.44739 5.53034 5.58736 5.65622 5.74227 5.75875 5.84901 5.87562 5.93674 5.96941 6.02358 6.11668 6.15389 6.20906 6.24720 6.26203 6.35714 6.50152 6.52970 6.69286 6.75194 6.78108 6.83061 6.86744 6.93429 7.07209 7.24022 7.44338 7.78114 7.80128 8.15421 8.29178 8.46334 8.68584 9.03918 9.67427 11.09641 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016247 B = 0.006951 C = 0.005666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.020708 B = 4027.151025 C = 4940.822487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.078 4.078 4 C -0.105 4.105 5 C -0.151 4.151 6 C 0.088 3.912 7 H 0.031 0.969 8 N -0.644 5.644 9 C 0.092 3.908 10 C 0.069 3.931 11 C -0.471 4.471 12 H 0.057 0.943 13 C 0.078 3.922 14 N -0.877 5.877 15 Si 0.887 3.113 16 H -0.273 1.273 17 H -0.290 1.290 18 H -0.283 1.283 19 C -0.210 4.210 20 C -0.208 4.208 21 C -0.159 4.159 22 C 0.087 3.913 23 H 0.056 0.944 24 O -0.331 6.331 25 C 0.031 3.969 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.328 0.672 37 H 0.120 0.880 38 H -0.014 1.014 39 H 0.258 0.742 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.035 0.965 48 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.902 -7.491 1.320 14.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.136 4.136 3 C -0.079 4.079 4 C -0.143 4.143 5 C -0.209 4.209 6 C -0.023 4.023 7 H 0.049 0.951 8 N -0.276 5.276 9 C -0.036 4.036 10 C 0.068 3.932 11 C -0.508 4.508 12 H 0.075 0.925 13 C -0.124 4.124 14 N -0.515 5.515 15 Si 0.715 3.285 16 H -0.198 1.198 17 H -0.217 1.217 18 H -0.209 1.209 19 C -0.248 4.248 20 C -0.246 4.246 21 C -0.197 4.197 22 C 0.029 3.971 23 H 0.074 0.926 24 O -0.248 6.248 25 C -0.066 4.066 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.149 0.851 37 H 0.138 0.862 38 H 0.004 0.996 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.104 0.896 45 H 0.095 0.905 46 H 0.101 0.899 47 H 0.053 0.947 48 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -12.862 -7.158 0.711 14.737 hybrid contribution 0.083 -0.162 -0.226 0.290 sum -12.779 -7.320 0.485 14.735 Atomic orbital electron populations 1.21763 0.95870 1.00958 1.02010 1.21269 0.95658 0.94648 1.02010 1.22236 0.96096 0.94390 0.95155 1.21302 0.99220 1.01197 0.92569 1.21818 1.01314 1.00342 0.97403 1.22349 0.92589 0.91866 0.95490 0.95082 1.60269 1.09866 1.30534 1.26979 1.21782 0.84095 0.93245 1.04507 1.18892 0.94403 0.94405 0.85457 1.20425 1.44888 0.92318 0.93213 0.92464 1.24832 0.94127 0.95137 0.98320 1.69901 1.34902 1.25995 1.20661 0.86633 0.77948 0.81590 0.82329 1.19759 1.21692 1.20883 1.22762 0.98262 0.99406 1.04337 1.23017 0.91761 0.99552 1.10319 1.23477 0.98208 1.00455 0.97573 1.22859 0.95945 0.82334 0.95991 0.92591 1.88139 1.77979 1.17067 1.41575 1.22728 0.94932 0.98865 0.90048 0.93157 0.92412 0.92874 0.91922 0.91516 0.89202 0.92652 0.93325 0.92892 0.93109 0.85130 0.86198 0.99625 0.93152 0.92092 0.90812 0.90571 0.92212 0.89598 0.90550 0.89924 0.94668 0.95167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.21 37.16 0.34 -1.14 16 2 C -0.10 -1.14 4.91 -26.73 -0.13 -1.27 16 3 C -0.08 -1.12 0.52 -153.69 -0.08 -1.20 16 4 C -0.11 -1.49 4.14 -26.73 -0.11 -1.60 16 5 C -0.15 -1.96 9.35 37.15 0.35 -1.62 16 6 C 0.09 1.55 2.99 -66.90 -0.20 1.35 16 7 H 0.03 0.56 8.07 -51.93 -0.42 0.14 16 8 N -0.64 -13.35 5.32 -105.86 -0.56 -13.91 16 9 C 0.09 2.20 5.43 -3.82 -0.02 2.18 16 10 C 0.07 1.76 1.97 -155.66 -0.31 1.45 16 11 C -0.47 -13.19 8.98 -34.44 -0.31 -13.50 16 12 H 0.06 1.63 7.89 -52.48 -0.41 1.21 16 13 C 0.08 2.16 5.02 -17.82 -0.09 2.07 16 14 N -0.88 -24.71 11.13 55.43 0.62 -24.09 16 15 Si 0.89 21.69 29.59 -169.99 -5.03 16.66 16 16 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 C -0.21 -4.72 9.45 -26.73 -0.25 -4.97 16 20 C -0.21 -4.94 9.88 -26.73 -0.26 -5.21 16 21 C -0.16 -2.75 7.36 -25.92 -0.19 -2.94 16 22 C 0.09 1.37 3.64 -25.92 -0.09 1.27 16 23 H 0.06 0.77 7.38 -51.92 -0.38 0.38 16 24 O -0.33 -5.93 8.78 -35.23 -0.31 -6.24 16 25 C 0.03 0.46 10.86 101.05 1.10 1.56 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.57 6.89 -51.93 -0.36 0.21 16 28 H 0.05 0.54 7.54 -51.93 -0.39 0.15 16 29 H 0.06 0.71 7.31 -51.93 -0.38 0.33 16 30 H 0.07 0.76 7.19 -51.93 -0.37 0.38 16 31 H 0.09 1.53 6.24 -51.93 -0.32 1.20 16 32 H 0.05 0.71 6.56 -51.93 -0.34 0.37 16 33 H 0.05 0.56 6.94 -51.93 -0.36 0.20 16 34 H 0.05 0.77 6.20 -51.93 -0.32 0.45 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.33 6.51 4.45 -39.29 -0.17 6.33 16 37 H 0.12 3.23 5.36 -51.93 -0.28 2.95 16 38 H -0.01 -0.34 7.89 -51.93 -0.41 -0.75 16 39 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 40 H 0.06 1.25 7.62 -51.93 -0.40 0.85 16 41 H 0.07 1.65 8.14 -51.93 -0.42 1.22 16 42 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 43 H 0.06 1.34 8.05 -51.93 -0.42 0.93 16 44 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 45 H 0.08 1.13 7.62 -51.93 -0.40 0.74 16 46 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 47 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 362.48 15.07 5.46 5.46 Total: -1.00 -28.65 362.48 -8.74 -37.39 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -8.65 Total: 8.29 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: -0.26 Total: -23.58 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.05 Total: -38.00 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: -0.31 Total: -6.24 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.65 -8.74 -37.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430739565.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.844 kcal (2) G-P(sol) polarization free energy of solvation -28.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds