Wall clock time and date at job start Tue Mar 31 2020 05:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47066 * 2 1 4 4 C 1.53004 * 112.90818 * 53.14643 * 3 2 1 5 5 C 1.52993 * 109.47177 * 64.91736 * 4 3 2 6 6 C 1.53779 * 113.61390 * 184.39784 * 3 2 1 7 7 H 1.09001 * 113.68918 * 334.55175 * 6 3 2 8 8 N 1.46901 * 113.61137 * 203.66457 * 6 3 2 9 9 C 1.46905 * 110.99779 * 176.14479 * 8 6 3 10 10 C 1.52997 * 109.47058 * 179.39339 * 9 8 6 11 11 C 1.50705 * 115.55704 * 273.25925 * 10 9 8 12 12 H 1.08007 * 119.99438 * 143.35078 * 11 10 9 13 13 C 1.37875 * 120.00490 * 323.34870 * 11 10 9 14 14 N 1.31516 * 119.99612 * 340.01235 * 13 11 10 15 15 Si 1.86796 * 120.00263 * 160.00850 * 13 11 10 16 16 H 1.48503 * 109.47073 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47035 * 120.00083 * 15 13 11 18 18 H 1.48498 * 109.47035 * 240.00346 * 15 13 11 19 19 C 1.52992 * 117.50431 * 58.95000 * 10 9 8 20 20 C 1.53001 * 60.00351 * 107.49173 * 19 10 9 21 21 C 1.53783 * 87.08283 * 89.11474 * 6 3 2 22 22 C 1.53776 * 113.61451 * 281.89333 * 3 2 1 23 23 H 1.09008 * 113.61481 * 25.43442 * 22 3 2 24 24 O 1.42899 * 113.61482 * 156.33536 * 22 3 2 25 25 C 1.42908 * 113.99836 * 207.00393 * 24 22 3 26 26 H 1.08993 * 109.47037 * 173.73358 * 1 2 3 27 27 H 1.09000 * 109.47234 * 293.73650 * 1 2 3 28 28 H 1.08999 * 109.46913 * 53.73257 * 1 2 3 29 29 H 1.08993 * 109.47347 * 239.99907 * 2 1 3 30 30 H 1.08997 * 109.47194 * 119.99866 * 2 1 3 31 31 H 1.08996 * 109.46813 * 184.92531 * 4 3 2 32 32 H 1.09001 * 109.46892 * 304.91890 * 4 3 2 33 33 H 1.08996 * 109.47472 * 301.76208 * 5 4 3 34 34 H 1.09001 * 109.47435 * 61.76531 * 5 4 3 35 35 H 1.08997 * 109.47150 * 181.76111 * 5 4 3 36 36 H 1.00897 * 111.00403 * 52.19530 * 8 6 3 37 37 H 1.08997 * 109.46993 * 59.38955 * 9 8 6 38 38 H 1.08998 * 109.47140 * 299.38614 * 9 8 6 39 39 H 0.97000 * 120.00191 * 185.06124 * 14 13 11 40 40 H 1.09005 * 117.49937 * 359.97438 * 19 10 9 41 41 H 1.09005 * 117.50555 * 214.98105 * 19 10 9 42 42 H 1.08994 * 117.49621 * 107.48840 * 20 19 10 43 43 H 1.09000 * 117.49832 * 252.49321 * 20 19 10 44 44 H 1.09001 * 113.60994 * 139.97804 * 21 6 3 45 45 H 1.08996 * 113.61115 * 270.88623 * 21 6 3 46 46 H 1.08997 * 109.46790 * 180.02562 * 25 24 22 47 47 H 1.09001 * 109.47034 * 299.99594 * 25 24 22 48 48 H 1.08994 * 109.47244 * 60.00184 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4416 2.2858 1.1277 5 6 1.9053 1.7350 2.4776 6 6 3.5699 1.5551 -0.1080 7 1 4.1007 0.6775 0.2611 8 7 4.1066 2.8134 0.4272 9 6 5.5748 2.8221 0.3792 10 6 6.0952 4.1515 0.9295 11 6 6.1997 5.2732 -0.0715 12 1 5.9723 6.2861 0.2269 13 6 6.5856 5.0067 -1.3680 14 7 7.2294 3.8943 -1.6468 15 14 6.1941 6.2254 -2.7284 16 1 5.4689 7.3887 -2.1572 17 1 7.4575 6.6897 -3.3557 18 1 5.3451 5.5670 -3.7535 19 6 5.7153 4.5190 2.3652 20 6 7.1481 4.0935 2.0381 21 6 3.3827 1.5649 -1.6344 22 6 1.9716 2.1201 -1.3787 23 1 1.2107 1.6981 -2.0354 24 8 1.9208 3.5467 -1.3136 25 6 1.2697 4.1567 -2.4299 26 1 -0.3633 -1.0215 -0.1122 27 1 -0.3634 0.4137 0.9407 28 1 -0.3633 0.6079 -0.8286 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.7726 3.3191 1.0237 32 1 0.3537 2.2457 1.0733 33 1 1.6013 0.6923 2.5684 34 1 2.9911 1.8041 2.5446 35 1 1.4541 2.3164 3.2817 36 1 3.7746 2.9781 1.3656 37 1 5.9053 2.7016 -0.6525 38 1 5.9630 2.0021 0.9832 39 1 7.5653 3.7401 -2.5436 40 1 5.0942 3.8138 2.9177 41 1 5.5409 5.5721 2.5860 42 1 7.9163 4.8668 2.0435 43 1 7.4701 3.1085 2.3758 44 1 4.0403 2.2645 -2.1504 45 1 3.3864 0.5707 -2.0811 46 1 1.2731 5.2396 -2.3052 47 1 1.7985 3.8953 -3.3464 48 1 0.2412 3.8008 -2.4896 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430739565.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:01 Heat of formation + Delta-G solvation = -14.078946 kcal Electronic energy + Delta-G solvation = -24534.422363 eV Core-core repulsion = 21397.403650 eV Total energy + Delta-G solvation = -3137.018713 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.51663 -38.65969 -37.38605 -34.77777 -34.16126 -33.21223 -31.75820 -27.81982 -27.54938 -26.56108 -26.09281 -24.73006 -23.56851 -22.83729 -21.75787 -20.76001 -18.96112 -18.15291 -17.49035 -16.86037 -16.75174 -16.51061 -15.95638 -15.51828 -15.41247 -15.08689 -14.87154 -14.57435 -14.16590 -13.75341 -13.59650 -13.49053 -13.35359 -13.05866 -12.88750 -12.82701 -12.72257 -12.36849 -12.33115 -12.19941 -12.13786 -12.07646 -12.04252 -11.71094 -11.31140 -11.24170 -10.98824 -10.85093 -10.65976 -10.52957 -10.10596 -9.89676 -8.83348 -8.06716 -6.04841 1.37688 1.42755 1.53059 2.45110 2.89022 3.03658 3.28472 3.69902 3.70729 3.88128 4.00706 4.11704 4.17589 4.33881 4.37891 4.45945 4.53685 4.56108 4.59324 4.60941 4.62792 4.67417 4.79020 4.80761 4.83968 4.89287 4.93521 4.94348 4.99282 5.04299 5.13559 5.17947 5.18590 5.23246 5.33893 5.36793 5.41309 5.48502 5.55622 5.61316 5.68289 5.78515 6.13918 6.46665 6.53105 6.66670 6.90248 6.94565 7.51576 8.96691 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016247 B = 0.006951 C = 0.005666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.020708 B = 4027.151025 C = 4940.822487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.059 4.059 4 C -0.102 4.102 5 C -0.147 4.147 6 C 0.075 3.925 7 H 0.028 0.972 8 N -0.648 5.648 9 C 0.106 3.894 10 C 0.038 3.962 11 C -0.493 4.493 12 H 0.043 0.957 13 C 0.040 3.960 14 N -0.897 5.897 15 Si 0.940 3.060 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.282 1.282 19 C -0.185 4.185 20 C -0.209 4.209 21 C -0.162 4.162 22 C 0.088 3.912 23 H 0.083 0.917 24 O -0.363 6.363 25 C 0.027 3.973 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.032 0.968 35 H 0.061 0.939 36 H 0.333 0.667 37 H 0.089 0.911 38 H -0.019 1.019 39 H 0.259 0.741 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.038 0.962 45 H 0.100 0.900 46 H 0.081 0.919 47 H 0.029 0.971 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.207 -8.580 1.691 17.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.133 4.133 3 C -0.059 4.059 4 C -0.139 4.139 5 C -0.204 4.204 6 C -0.036 4.036 7 H 0.045 0.955 8 N -0.281 5.281 9 C -0.022 4.022 10 C 0.037 3.963 11 C -0.530 4.530 12 H 0.061 0.939 13 C -0.160 4.160 14 N -0.535 5.535 15 Si 0.767 3.233 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.208 1.208 19 C -0.223 4.223 20 C -0.247 4.247 21 C -0.201 4.201 22 C 0.030 3.970 23 H 0.100 0.900 24 O -0.281 6.281 25 C -0.070 4.070 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.154 0.846 37 H 0.107 0.893 38 H -0.001 1.001 39 H 0.069 0.931 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.057 0.943 45 H 0.119 0.881 46 H 0.100 0.900 47 H 0.048 0.952 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.171 -8.242 1.086 17.299 hybrid contribution 0.825 0.176 -0.340 0.909 sum -14.346 -8.067 0.746 16.475 Atomic orbital electron populations 1.21739 0.94099 1.02171 1.02198 1.21296 0.97079 0.92302 1.02637 1.22187 0.93006 0.96205 0.94541 1.21231 1.00237 0.99350 0.93098 1.21778 1.00003 1.01645 0.97017 1.22500 0.95236 0.90258 0.95596 0.95455 1.60160 1.07826 1.32686 1.27385 1.21414 0.86179 0.92403 1.02238 1.19006 0.96368 0.94605 0.86348 1.20611 1.45362 0.92476 0.94550 0.93870 1.25401 0.93945 0.96736 0.99951 1.69997 1.35376 1.27177 1.20944 0.85795 0.77831 0.79732 0.79931 1.19737 1.20889 1.20816 1.22740 0.97416 0.99975 1.02123 1.22987 0.92137 0.99941 1.09676 1.23543 0.98821 1.00773 0.96939 1.22958 0.95161 0.81615 0.97303 0.89972 1.88096 1.78727 1.18431 1.42863 1.22860 0.96322 0.98891 0.88923 0.91427 0.92100 0.92881 0.91410 0.90910 0.92315 0.90772 0.91491 0.94854 0.92021 0.84617 0.89297 1.00121 0.93118 0.89803 0.90742 0.91476 0.91092 0.94268 0.88130 0.90022 0.95239 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.21 71.98 0.66 -1.64 16 2 C -0.10 -1.91 4.91 30.60 0.15 -1.76 16 3 C -0.06 -1.57 0.52 -51.65 -0.03 -1.60 16 4 C -0.10 -2.68 4.14 30.59 0.13 -2.55 16 5 C -0.15 -3.48 9.35 71.98 0.67 -2.81 16 6 C 0.07 2.62 2.99 45.44 0.14 2.75 16 7 H 0.03 0.98 8.07 -2.39 -0.02 0.96 16 8 N -0.65 -27.25 5.32 -488.85 -2.60 -29.86 16 9 C 0.11 5.25 5.43 86.30 0.47 5.72 16 10 C 0.04 1.94 1.97 -52.93 -0.10 1.83 16 11 C -0.49 -28.27 8.98 25.60 0.23 -28.04 16 12 H 0.04 2.52 7.89 -2.91 -0.02 2.50 16 13 C 0.04 2.26 5.02 84.65 0.43 2.69 16 14 N -0.90 -51.97 11.13 21.45 0.24 -51.73 16 15 Si 0.94 45.49 29.59 68.60 2.03 47.52 16 16 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 17 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 18 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 19 C -0.19 -8.23 9.45 30.59 0.29 -7.94 16 20 C -0.21 -9.96 9.88 30.60 0.30 -9.66 16 21 C -0.16 -5.65 7.36 31.12 0.23 -5.42 16 22 C 0.09 2.63 3.64 31.12 0.11 2.74 16 23 H 0.08 2.02 7.38 -2.38 -0.02 2.00 16 24 O -0.36 -12.88 8.78 -148.98 -1.31 -14.18 16 25 C 0.03 0.75 10.86 113.37 1.23 1.99 16 26 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.94 6.89 -2.39 -0.02 0.92 16 28 H 0.05 0.86 7.54 -2.39 -0.02 0.84 16 29 H 0.07 1.31 7.31 -2.39 -0.02 1.29 16 30 H 0.07 1.40 7.19 -2.39 -0.02 1.38 16 31 H 0.06 1.95 6.24 -2.39 -0.01 1.93 16 32 H 0.07 1.68 6.56 -2.39 -0.02 1.67 16 33 H 0.07 1.34 6.94 -2.39 -0.02 1.32 16 34 H 0.03 0.91 6.20 -2.39 -0.01 0.90 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.33 13.22 4.45 -89.70 -0.40 12.82 16 37 H 0.09 5.00 5.36 -2.39 -0.01 4.98 16 38 H -0.02 -0.93 7.89 -2.39 -0.02 -0.95 16 39 H 0.26 14.33 8.32 -92.71 -0.77 13.56 16 40 H 0.08 3.31 7.62 -2.38 -0.02 3.29 16 41 H 0.07 3.28 8.14 -2.38 -0.02 3.26 16 42 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 43 H 0.07 3.18 8.05 -2.39 -0.02 3.16 16 44 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.10 2.90 7.62 -2.39 -0.02 2.88 16 46 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -63.24 362.48 3.78 -59.46 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: 0.52 Total: 32.48 kcal Atomic # 6 Polarization: -48.59 SS G_CDS: 4.91 Total: -43.69 kcal Atomic # 7 Polarization: -79.22 SS G_CDS: -2.36 Total: -81.59 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -1.31 Total: -14.18 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -63.24 3.78 -59.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430739565.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.380 kcal (2) G-P(sol) polarization free energy of solvation -63.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds