Wall clock time and date at job start Tue Mar 31 2020 05:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46788 * 2 1 4 4 C 1.53004 * 112.85239 * 286.20927 * 3 2 1 5 5 C 1.53002 * 109.46870 * 308.64950 * 4 3 2 6 6 C 1.53783 * 113.61394 * 57.40783 * 3 2 1 7 7 H 1.08997 * 113.61427 * 334.56263 * 6 3 2 8 8 O 1.42898 * 113.61143 * 203.66235 * 6 3 2 9 9 C 1.42903 * 114.00240 * 152.99893 * 8 6 3 10 10 C 1.53777 * 87.08010 * 89.11431 * 6 3 2 11 11 C 1.53784 * 87.17864 * 25.38963 * 10 6 3 12 12 H 1.08993 * 113.61293 * 220.06193 * 11 10 6 13 13 N 1.46893 * 113.61353 * 89.15442 * 11 10 6 14 14 C 1.46898 * 111.00048 * 79.13160 * 13 11 10 15 15 C 1.53003 * 109.47462 * 185.56467 * 14 13 11 16 16 C 1.50695 * 115.54945 * 306.27349 * 15 14 13 17 17 H 1.07999 * 120.00105 * 144.93245 * 16 15 14 18 18 C 1.37875 * 119.99698 * 324.92663 * 16 15 14 19 19 N 1.31509 * 120.00548 * 349.38120 * 18 16 15 20 20 Si 1.86800 * 119.99700 * 169.37991 * 18 16 15 21 21 H 1.48507 * 109.47060 * 90.00270 * 20 18 16 22 22 H 1.48501 * 109.47540 * 210.00244 * 20 18 16 23 23 H 1.48506 * 109.47352 * 330.00251 * 20 18 16 24 24 C 1.53007 * 117.49749 * 160.59953 * 15 14 13 25 25 C 1.52998 * 117.49748 * 91.94433 * 15 14 13 26 26 H 1.09003 * 109.47176 * 60.40092 * 1 2 3 27 27 H 1.08999 * 109.47036 * 180.39676 * 1 2 3 28 28 H 1.08998 * 109.47226 * 300.39981 * 1 2 3 29 29 H 1.09006 * 109.46850 * 240.00595 * 2 1 3 30 30 H 1.08993 * 109.46895 * 120.00158 * 2 1 3 31 31 H 1.09000 * 109.47123 * 68.64677 * 4 3 2 32 32 H 1.08997 * 109.47360 * 188.65215 * 4 3 2 33 33 H 1.08996 * 109.46910 * 185.91803 * 5 4 3 34 34 H 1.09002 * 109.47333 * 305.91698 * 5 4 3 35 35 H 1.08999 * 109.47053 * 65.91466 * 5 4 3 36 36 H 1.09005 * 109.46637 * 299.99887 * 9 8 6 37 37 H 1.09001 * 109.46992 * 59.99658 * 9 8 6 38 38 H 1.08994 * 109.47325 * 180.02562 * 9 8 6 39 39 H 1.09002 * 113.61558 * 139.98081 * 10 6 3 40 40 H 1.09003 * 113.61635 * 270.79669 * 10 6 3 41 41 H 1.00898 * 111.00321 * 203.08405 * 13 11 10 42 42 H 1.09003 * 109.47017 * 305.56284 * 14 13 11 43 43 H 1.08993 * 109.47275 * 65.56260 * 14 13 11 44 44 H 0.96994 * 120.00162 * 185.14152 * 19 18 16 45 45 H 1.08999 * 117.49799 * 0.02562 * 24 15 14 46 46 H 1.08997 * 117.49597 * 145.02284 * 24 15 14 47 47 H 1.09005 * 117.50014 * 214.97979 * 25 15 14 48 48 H 1.09009 * 117.50174 * 359.97374 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.8669 2.1339 -1.3539 5 6 2.4604 1.2536 -2.4556 6 6 1.5296 2.2762 1.1872 7 1 0.5851 1.9192 1.5975 8 8 1.5324 3.6839 0.9412 9 6 0.5591 4.4079 1.6965 10 6 2.7633 1.7838 1.9619 11 6 3.4500 1.5961 0.5987 12 1 4.0535 0.6907 0.5349 13 7 4.1617 2.7920 0.1287 14 6 5.4637 2.9259 0.7956 15 6 6.1127 4.2497 0.3864 16 6 6.2378 4.4809 -1.0974 17 1 6.1291 5.4773 -1.4997 18 6 6.4910 3.4205 -1.9414 19 7 6.8295 2.2508 -1.4446 20 14 6.3532 3.6451 -3.7907 21 1 7.6668 4.0716 -4.3368 22 1 5.9505 2.3603 -4.4169 23 1 5.3330 4.6823 -4.0888 24 6 7.2244 4.7984 1.2832 25 6 5.8486 5.4693 1.2717 26 1 -0.3634 0.5076 -0.8936 27 1 -0.3633 -1.0276 0.0071 28 1 -0.3633 0.5200 0.8864 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 0.8061 2.2928 -1.5478 32 1 2.3816 3.0946 -1.3397 33 1 2.4323 1.7901 -3.4040 34 1 3.4930 1.0079 -2.2076 35 1 1.8787 0.3356 -2.5400 36 1 -0.4375 4.0406 1.4516 37 1 0.7468 4.2670 2.7609 38 1 0.6252 5.4682 1.4528 39 1 3.2254 2.5525 2.5813 40 1 2.5974 0.8502 2.4994 41 1 4.2690 2.7781 -0.8744 42 1 5.3219 2.9096 1.8762 43 1 6.1094 2.0985 0.5014 44 1 7.0800 1.5259 -2.0382 45 1 7.4937 4.2161 2.1643 46 1 8.0460 5.3270 0.7998 47 1 5.7657 6.4390 0.7809 48 1 5.2121 5.3287 2.1454 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430739566.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:04 Heat of formation + Delta-G solvation = -0.527488 kcal Electronic energy + Delta-G solvation = -24664.639963 eV Core-core repulsion = 21528.208885 eV Total energy + Delta-G solvation = -3136.431078 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.15236 -36.70496 -36.07766 -33.37028 -32.18377 -31.59856 -30.50720 -26.47669 -25.60912 -25.35169 -24.41143 -23.65007 -21.89812 -20.97142 -20.40972 -18.83579 -17.48608 -16.40887 -16.08630 -15.47858 -15.03895 -14.74271 -14.54258 -14.11580 -13.85096 -13.60087 -13.37124 -12.97521 -12.73003 -12.52714 -12.43346 -11.93097 -11.77624 -11.71577 -11.45861 -11.05070 -11.00833 -10.94191 -10.93314 -10.83966 -10.65132 -10.48281 -10.33274 -10.10750 -9.94624 -9.57231 -9.51276 -9.09982 -8.93733 -8.85106 -8.55288 -7.98573 -6.96864 -5.91209 -3.99478 3.28649 3.36949 3.42943 4.07932 4.40992 4.71257 4.97356 5.07840 5.20439 5.24044 5.30046 5.43180 5.52713 5.57474 5.61276 5.63468 5.68579 5.77298 5.81514 5.92486 5.95728 6.01487 6.09465 6.13934 6.16500 6.24114 6.32157 6.35295 6.41832 6.51985 6.59478 6.62227 6.77146 6.83850 6.88720 6.93242 7.01470 7.09923 7.13931 7.37851 7.49296 7.69015 7.76801 8.05058 8.49172 8.57492 8.81253 9.01092 9.57303 11.01941 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015093 B = 0.007418 C = 0.005951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.725076 B = 3773.521727 C = 4704.170082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.102 4.102 3 C -0.075 4.075 4 C -0.101 4.101 5 C -0.153 4.153 6 C 0.086 3.914 7 H 0.059 0.941 8 O -0.331 6.331 9 C 0.031 3.969 10 C -0.161 4.161 11 C 0.086 3.914 12 H 0.032 0.968 13 N -0.642 5.642 14 C 0.107 3.893 15 C 0.064 3.936 16 C -0.471 4.471 17 H 0.057 0.943 18 C 0.068 3.932 19 N -0.884 5.884 20 Si 0.882 3.118 21 H -0.283 1.283 22 H -0.284 1.284 23 H -0.271 1.271 24 C -0.211 4.211 25 C -0.201 4.201 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.030 0.970 37 H 0.033 0.967 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.354 0.646 42 H 0.021 0.979 43 H 0.071 0.929 44 H 0.259 0.741 45 H 0.060 0.940 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.320 -4.213 4.072 13.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.140 4.140 3 C -0.075 4.075 4 C -0.138 4.138 5 C -0.210 4.210 6 C 0.028 3.972 7 H 0.076 0.924 8 O -0.248 6.248 9 C -0.066 4.066 10 C -0.199 4.199 11 C -0.025 4.025 12 H 0.050 0.950 13 N -0.276 5.276 14 C -0.022 4.022 15 C 0.063 3.937 16 C -0.509 4.509 17 H 0.075 0.925 18 C -0.133 4.133 19 N -0.522 5.522 20 Si 0.709 3.291 21 H -0.209 1.209 22 H -0.210 1.210 23 H -0.195 1.195 24 C -0.249 4.249 25 C -0.238 4.238 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.110 0.890 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.048 0.952 37 H 0.051 0.949 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.177 0.823 42 H 0.039 0.961 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.092 0.908 47 H 0.087 0.913 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.524 -3.909 4.284 13.802 hybrid contribution 0.431 -0.640 -1.056 1.309 sum -12.093 -4.549 3.228 13.317 Atomic orbital electron populations 1.21769 0.96091 1.00958 1.01830 1.21351 0.95468 0.94917 1.02267 1.22194 0.96603 0.93805 0.94946 1.21232 1.00067 1.00397 0.92113 1.21834 1.01324 0.99296 0.98595 1.22941 0.95738 0.82359 0.96185 0.92360 1.88172 1.55879 1.16851 1.63875 1.22725 0.91263 0.97364 0.95285 1.23492 0.98271 1.00543 0.97592 1.22387 0.92694 0.93123 0.94299 0.95046 1.60288 1.20793 1.34475 1.12034 1.21351 0.88841 0.98604 0.93413 1.18882 0.93856 0.89466 0.91458 1.20550 1.47253 0.93649 0.89402 0.92453 1.24937 0.94951 0.95148 0.98309 1.69911 1.45193 1.02941 1.34193 0.86731 0.78564 0.77773 0.86004 1.20880 1.21012 1.19540 1.22955 0.92304 1.06534 1.03133 1.22778 0.98872 0.98940 1.03210 0.92581 0.93147 0.92915 0.91019 0.92101 0.93167 0.88992 0.93338 0.92408 0.93495 0.95157 0.94875 0.90001 0.90666 0.90603 0.82313 0.96098 0.91131 0.93095 0.92135 0.90819 0.91252 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.60 37.16 0.36 -1.26 16 2 C -0.10 -1.32 5.12 -26.73 -0.14 -1.45 16 3 C -0.07 -1.16 0.54 -153.60 -0.08 -1.24 16 4 C -0.10 -1.66 4.20 -26.73 -0.11 -1.77 16 5 C -0.15 -2.47 9.08 37.16 0.34 -2.13 16 6 C 0.09 1.32 3.59 -25.92 -0.09 1.22 16 7 H 0.06 0.77 5.99 -51.93 -0.31 0.46 16 8 O -0.33 -5.66 9.08 -35.23 -0.32 -5.98 16 9 C 0.03 0.41 10.86 101.05 1.10 1.50 16 10 C -0.16 -2.61 7.13 -25.92 -0.18 -2.79 16 11 C 0.09 1.59 3.34 -66.81 -0.22 1.37 16 12 H 0.03 0.63 8.10 -51.93 -0.42 0.21 16 13 N -0.64 -14.04 4.98 -105.77 -0.53 -14.57 16 14 C 0.11 2.55 4.81 -3.82 -0.02 2.53 16 15 C 0.06 1.62 2.09 -155.66 -0.33 1.29 16 16 C -0.47 -12.74 8.48 -34.44 -0.29 -13.04 16 17 H 0.06 1.59 7.84 -52.49 -0.41 1.17 16 18 C 0.07 1.79 4.19 -17.82 -0.07 1.72 16 19 N -0.88 -23.68 10.64 55.43 0.59 -23.09 16 20 Si 0.88 20.72 29.55 -169.99 -5.02 15.69 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 C -0.21 -4.98 9.96 -26.69 -0.27 -5.24 16 25 C -0.20 -4.64 9.92 -26.70 -0.26 -4.90 16 26 H 0.06 0.62 7.44 -51.93 -0.39 0.23 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.55 6.32 -51.93 -0.33 0.22 16 29 H 0.07 0.93 6.08 -51.93 -0.32 0.62 16 30 H 0.06 0.75 7.36 -51.93 -0.38 0.37 16 31 H 0.05 0.76 7.58 -51.93 -0.39 0.37 16 32 H 0.09 1.81 6.12 -51.93 -0.32 1.50 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.06 7.85 -51.93 -0.41 0.65 16 35 H 0.05 0.65 6.67 -51.93 -0.35 0.30 16 36 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 1.35 7.61 -51.93 -0.40 0.96 16 40 H 0.08 1.06 7.69 -51.93 -0.40 0.66 16 41 H 0.35 8.44 5.37 -39.29 -0.21 8.23 16 42 H 0.02 0.48 7.38 -51.93 -0.38 0.10 16 43 H 0.07 1.86 6.03 -51.93 -0.31 1.55 16 44 H 0.26 6.72 8.32 -40.82 -0.34 6.38 16 45 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 46 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 47 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 48 H 0.07 1.45 8.14 -51.92 -0.42 1.02 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -27.09 361.53 -8.78 -35.87 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -8.66 Total: 10.84 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: -0.28 Total: -24.20 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.06 Total: -37.66 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.32 Total: -5.98 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -27.09 -8.78 -35.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430739566.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.341 kcal (2) G-P(sol) polarization free energy of solvation -27.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds