Wall clock time and date at job start Tue Mar 31 2020 05:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46788 * 2 1 4 4 C 1.53004 * 112.85239 * 286.20927 * 3 2 1 5 5 C 1.53002 * 109.46870 * 308.64950 * 4 3 2 6 6 C 1.53783 * 113.61394 * 57.40783 * 3 2 1 7 7 H 1.08997 * 113.61427 * 334.56263 * 6 3 2 8 8 O 1.42898 * 113.61143 * 203.66235 * 6 3 2 9 9 C 1.42903 * 114.00240 * 152.99893 * 8 6 3 10 10 C 1.53777 * 87.08010 * 89.11431 * 6 3 2 11 11 C 1.53784 * 87.17864 * 25.38963 * 10 6 3 12 12 H 1.08993 * 113.61293 * 220.06193 * 11 10 6 13 13 N 1.46893 * 113.61353 * 89.15442 * 11 10 6 14 14 C 1.46898 * 111.00048 * 79.13160 * 13 11 10 15 15 C 1.53003 * 109.47462 * 185.56467 * 14 13 11 16 16 C 1.50695 * 115.54945 * 306.27349 * 15 14 13 17 17 H 1.07999 * 120.00105 * 144.93245 * 16 15 14 18 18 C 1.37875 * 119.99698 * 324.92663 * 16 15 14 19 19 N 1.31509 * 120.00548 * 349.38120 * 18 16 15 20 20 Si 1.86800 * 119.99700 * 169.37991 * 18 16 15 21 21 H 1.48507 * 109.47060 * 90.00270 * 20 18 16 22 22 H 1.48501 * 109.47540 * 210.00244 * 20 18 16 23 23 H 1.48506 * 109.47352 * 330.00251 * 20 18 16 24 24 C 1.53007 * 117.49749 * 160.59953 * 15 14 13 25 25 C 1.52998 * 117.49748 * 91.94433 * 15 14 13 26 26 H 1.09003 * 109.47176 * 60.40092 * 1 2 3 27 27 H 1.08999 * 109.47036 * 180.39676 * 1 2 3 28 28 H 1.08998 * 109.47226 * 300.39981 * 1 2 3 29 29 H 1.09006 * 109.46850 * 240.00595 * 2 1 3 30 30 H 1.08993 * 109.46895 * 120.00158 * 2 1 3 31 31 H 1.09000 * 109.47123 * 68.64677 * 4 3 2 32 32 H 1.08997 * 109.47360 * 188.65215 * 4 3 2 33 33 H 1.08996 * 109.46910 * 185.91803 * 5 4 3 34 34 H 1.09002 * 109.47333 * 305.91698 * 5 4 3 35 35 H 1.08999 * 109.47053 * 65.91466 * 5 4 3 36 36 H 1.09005 * 109.46637 * 299.99887 * 9 8 6 37 37 H 1.09001 * 109.46992 * 59.99658 * 9 8 6 38 38 H 1.08994 * 109.47325 * 180.02562 * 9 8 6 39 39 H 1.09002 * 113.61558 * 139.98081 * 10 6 3 40 40 H 1.09003 * 113.61635 * 270.79669 * 10 6 3 41 41 H 1.00898 * 111.00321 * 203.08405 * 13 11 10 42 42 H 1.09003 * 109.47017 * 305.56284 * 14 13 11 43 43 H 1.08993 * 109.47275 * 65.56260 * 14 13 11 44 44 H 0.96994 * 120.00162 * 185.14152 * 19 18 16 45 45 H 1.08999 * 117.49799 * 0.02562 * 24 15 14 46 46 H 1.08997 * 117.49597 * 145.02284 * 24 15 14 47 47 H 1.09005 * 117.50014 * 214.97979 * 25 15 14 48 48 H 1.09009 * 117.50174 * 359.97374 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.8669 2.1339 -1.3539 5 6 2.4604 1.2536 -2.4556 6 6 1.5296 2.2762 1.1872 7 1 0.5851 1.9192 1.5975 8 8 1.5324 3.6839 0.9412 9 6 0.5591 4.4079 1.6965 10 6 2.7633 1.7838 1.9619 11 6 3.4500 1.5961 0.5987 12 1 4.0535 0.6907 0.5349 13 7 4.1617 2.7920 0.1287 14 6 5.4637 2.9259 0.7956 15 6 6.1127 4.2497 0.3864 16 6 6.2378 4.4809 -1.0974 17 1 6.1291 5.4773 -1.4997 18 6 6.4910 3.4205 -1.9414 19 7 6.8295 2.2508 -1.4446 20 14 6.3532 3.6451 -3.7907 21 1 7.6668 4.0716 -4.3368 22 1 5.9505 2.3603 -4.4169 23 1 5.3330 4.6823 -4.0888 24 6 7.2244 4.7984 1.2832 25 6 5.8486 5.4693 1.2717 26 1 -0.3634 0.5076 -0.8936 27 1 -0.3633 -1.0276 0.0071 28 1 -0.3633 0.5200 0.8864 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 0.8061 2.2928 -1.5478 32 1 2.3816 3.0946 -1.3397 33 1 2.4323 1.7901 -3.4040 34 1 3.4930 1.0079 -2.2076 35 1 1.8787 0.3356 -2.5400 36 1 -0.4375 4.0406 1.4516 37 1 0.7468 4.2670 2.7609 38 1 0.6252 5.4682 1.4528 39 1 3.2254 2.5525 2.5813 40 1 2.5974 0.8502 2.4994 41 1 4.2690 2.7781 -0.8744 42 1 5.3219 2.9096 1.8762 43 1 6.1094 2.0985 0.5014 44 1 7.0800 1.5259 -2.0382 45 1 7.4937 4.2161 2.1643 46 1 8.0460 5.3270 0.7998 47 1 5.7657 6.4390 0.7809 48 1 5.2121 5.3287 2.1454 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430739566.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:03 Heat of formation + Delta-G solvation = -14.443999 kcal Electronic energy + Delta-G solvation = -24665.243428 eV Core-core repulsion = 21528.208885 eV Total energy + Delta-G solvation = -3137.034543 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.43722 -38.55567 -37.32592 -34.81439 -34.14338 -33.02244 -31.74842 -27.74054 -27.44629 -26.71958 -25.97998 -24.83198 -23.22749 -22.84537 -21.75427 -20.79533 -18.78017 -18.09363 -17.54466 -16.79423 -16.70572 -16.35173 -15.91992 -15.62866 -15.30025 -14.98473 -14.75646 -14.51429 -14.14060 -13.86862 -13.58176 -13.46347 -13.25616 -13.01117 -12.89217 -12.76744 -12.72469 -12.57916 -12.22416 -12.18338 -12.14169 -12.00527 -11.96957 -11.66715 -11.30516 -11.09641 -11.01220 -10.82473 -10.69182 -10.43354 -10.06334 -9.95250 -8.74117 -7.93429 -6.10028 1.38193 1.42956 1.52315 2.43004 2.95480 3.04586 3.40011 3.73973 3.76046 3.94724 4.05087 4.14894 4.19182 4.37107 4.41892 4.46847 4.53405 4.61186 4.64640 4.66580 4.67777 4.74644 4.83808 4.86031 4.92770 4.93721 4.95483 5.01796 5.02355 5.09880 5.11981 5.16802 5.21524 5.24380 5.33325 5.39876 5.45844 5.52418 5.58284 5.62276 5.68409 5.77866 6.01184 6.50114 6.62950 6.76402 6.87053 7.07842 7.48711 8.95788 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015093 B = 0.007418 C = 0.005951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.725076 B = 3773.521727 C = 4704.170082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 C -0.065 4.065 4 C -0.096 4.096 5 C -0.148 4.148 6 C 0.093 3.907 7 H 0.089 0.911 8 O -0.366 6.366 9 C 0.026 3.974 10 C -0.154 4.154 11 C 0.067 3.933 12 H 0.012 0.988 13 N -0.640 5.640 14 C 0.122 3.878 15 C 0.035 3.965 16 C -0.492 4.492 17 H 0.043 0.957 18 C 0.039 3.961 19 N -0.897 5.897 20 Si 0.933 3.067 21 H -0.281 1.281 22 H -0.278 1.278 23 H -0.271 1.271 24 C -0.208 4.208 25 C -0.184 4.184 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.027 0.973 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.040 0.960 38 H 0.083 0.917 39 H 0.054 0.946 40 H 0.102 0.898 41 H 0.340 0.660 42 H 0.023 0.977 43 H 0.042 0.958 44 H 0.259 0.741 45 H 0.073 0.927 46 H 0.067 0.933 47 H 0.069 0.931 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.546 -5.018 4.411 16.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.137 4.137 3 C -0.066 4.066 4 C -0.133 4.133 5 C -0.205 4.205 6 C 0.034 3.966 7 H 0.106 0.894 8 O -0.284 6.284 9 C -0.070 4.070 10 C -0.192 4.192 11 C -0.044 4.044 12 H 0.030 0.970 13 N -0.271 5.271 14 C -0.008 4.008 15 C 0.035 3.965 16 C -0.530 4.530 17 H 0.061 0.939 18 C -0.161 4.161 19 N -0.536 5.536 20 Si 0.759 3.241 21 H -0.207 1.207 22 H -0.204 1.204 23 H -0.196 1.196 24 C -0.246 4.246 25 C -0.221 4.221 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.101 0.899 39 H 0.073 0.927 40 H 0.121 0.879 41 H 0.161 0.839 42 H 0.041 0.959 43 H 0.059 0.941 44 H 0.068 0.932 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.757 -4.708 4.642 16.171 hybrid contribution 1.146 -0.372 -1.137 1.657 sum -13.611 -5.080 3.505 14.945 Atomic orbital electron populations 1.21738 0.93943 1.02312 1.02142 1.21356 0.97213 0.92649 1.02511 1.22211 0.94199 0.95692 0.94459 1.21126 1.00519 0.98755 0.92932 1.21783 0.99875 1.00442 0.98383 1.22951 0.96414 0.81813 0.95388 0.89358 1.88131 1.57446 1.17914 1.64891 1.22885 0.91571 0.97226 0.95361 1.23514 0.98286 1.01258 0.96128 1.22593 0.93817 0.91022 0.96964 0.97013 1.60298 1.19561 1.36416 1.10862 1.21077 0.89359 0.96918 0.93426 1.19056 0.95437 0.90929 0.91123 1.20659 1.48261 0.93258 0.90799 0.93892 1.25411 0.94463 0.94840 1.01418 1.70029 1.45216 1.03228 1.35100 0.85936 0.78325 0.77763 0.82081 1.20716 1.20367 1.19617 1.22943 0.92199 1.06403 1.03086 1.22728 0.98532 0.98057 1.02825 0.92695 0.91341 0.92137 0.91374 0.91416 0.91366 0.92629 0.93454 0.95397 0.90863 0.92897 0.94090 0.89892 0.92725 0.87936 0.83946 0.95879 0.94054 0.93174 0.90898 0.91396 0.91258 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.60 71.98 0.69 -1.87 16 2 C -0.10 -2.30 5.12 30.59 0.16 -2.15 16 3 C -0.07 -1.93 0.54 -51.59 -0.03 -1.96 16 4 C -0.10 -3.09 4.20 30.60 0.13 -2.96 16 5 C -0.15 -4.68 9.08 71.98 0.65 -4.02 16 6 C 0.09 2.63 3.59 31.12 0.11 2.74 16 7 H 0.09 1.99 5.99 -2.39 -0.01 1.98 16 8 O -0.37 -12.08 9.08 -148.98 -1.35 -13.43 16 9 C 0.03 0.63 10.86 113.37 1.23 1.86 16 10 C -0.15 -4.80 7.13 31.12 0.22 -4.57 16 11 C 0.07 2.49 3.34 45.51 0.15 2.64 16 12 H 0.01 0.49 8.10 -2.39 -0.02 0.47 16 13 N -0.64 -28.70 4.98 -488.56 -2.43 -31.13 16 14 C 0.12 5.96 4.81 86.30 0.41 6.38 16 15 C 0.04 1.81 2.09 -52.93 -0.11 1.70 16 16 C -0.49 -27.29 8.48 25.60 0.22 -27.07 16 17 H 0.04 2.44 7.84 -2.91 -0.02 2.42 16 18 C 0.04 2.09 4.19 84.65 0.36 2.44 16 19 N -0.90 -49.25 10.64 21.45 0.23 -49.02 16 20 Si 0.93 43.19 29.55 68.60 2.03 45.22 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 24 C -0.21 -9.86 9.96 30.62 0.30 -9.56 16 25 C -0.18 -8.50 9.92 30.62 0.30 -8.20 16 26 H 0.05 1.00 7.44 -2.39 -0.02 0.98 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 0.99 6.32 -2.39 -0.02 0.97 16 29 H 0.07 1.63 6.08 -2.38 -0.01 1.61 16 30 H 0.07 1.48 7.36 -2.39 -0.02 1.47 16 31 H 0.07 1.93 7.58 -2.39 -0.02 1.92 16 32 H 0.05 2.22 6.12 -2.39 -0.01 2.21 16 33 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.03 1.03 7.85 -2.39 -0.02 1.01 16 35 H 0.07 1.90 6.67 -2.39 -0.02 1.88 16 36 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 37 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.05 1.93 7.61 -2.39 -0.02 1.91 16 40 H 0.10 2.61 7.69 -2.39 -0.02 2.59 16 41 H 0.34 16.82 5.37 -89.70 -0.48 16.34 16 42 H 0.02 1.09 7.38 -2.39 -0.02 1.07 16 43 H 0.04 2.27 6.03 -2.39 -0.01 2.25 16 44 H 0.26 13.70 8.32 -92.71 -0.77 12.93 16 45 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 46 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 47 H 0.07 3.17 8.14 -2.38 -0.02 3.15 16 48 H 0.08 3.38 8.14 -2.38 -0.02 3.36 16 Total: -1.00 -59.29 361.53 3.71 -55.59 By element: Atomic # 1 Polarization: 36.93 SS G_CDS: 0.44 Total: 37.37 kcal Atomic # 6 Polarization: -49.40 SS G_CDS: 4.80 Total: -44.59 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -2.20 Total: -80.15 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -1.35 Total: -13.43 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -59.29 3.71 -55.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430739566.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.141 kcal (2) G-P(sol) polarization free energy of solvation -59.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds