Wall clock time and date at job start Tue Mar 31 2020 06:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47101 * 2 1 4 4 C 1.53001 * 109.46980 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47207 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47046 * 304.99723 * 5 4 3 7 7 C 1.53005 * 109.47035 * 64.99276 * 5 4 3 8 8 C 1.53001 * 109.46827 * 59.53418 * 7 5 4 9 9 C 1.52998 * 109.47358 * 184.99479 * 5 4 3 10 10 C 1.50706 * 109.47043 * 174.20547 * 9 5 4 11 11 O 1.21279 * 120.00157 * 355.73176 * 10 9 5 12 12 N 1.34777 * 119.99684 * 175.72938 * 10 9 5 13 13 C 1.46496 * 119.99735 * 184.91181 * 12 10 9 14 14 C 1.53003 * 109.46832 * 185.02320 * 13 12 10 15 15 C 1.50696 * 115.55408 * 60.57840 * 14 13 12 16 16 H 1.07997 * 119.99675 * 267.78899 * 15 14 13 17 17 C 1.37873 * 120.00487 * 87.78300 * 15 14 13 18 18 N 1.31507 * 120.00441 * 179.51128 * 17 15 14 19 19 Si 1.86803 * 119.99791 * 359.50702 * 17 15 14 20 20 H 1.48504 * 109.47147 * 91.85364 * 19 17 15 21 21 H 1.48502 * 109.47346 * 211.85113 * 19 17 15 22 22 H 1.48504 * 109.47145 * 331.85737 * 19 17 15 23 23 C 1.53005 * 117.49725 * 274.90366 * 14 13 12 24 24 C 1.53000 * 117.49590 * 206.24632 * 14 13 12 25 25 H 1.09000 * 109.46680 * 299.99949 * 1 2 3 26 26 H 1.08997 * 109.46883 * 60.00048 * 1 2 3 27 27 H 1.08995 * 109.47023 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47036 * 239.99648 * 2 1 3 29 29 H 1.08997 * 109.46883 * 119.99952 * 2 1 3 30 30 H 1.08999 * 109.47464 * 59.99909 * 3 2 1 31 31 H 1.09006 * 109.47163 * 299.99909 * 3 2 1 32 32 H 1.08999 * 109.47513 * 59.99429 * 4 3 2 33 33 H 1.09003 * 109.47177 * 299.99595 * 4 3 2 34 34 H 1.08990 * 109.47602 * 299.53157 * 7 5 4 35 35 H 1.09001 * 109.46980 * 179.52730 * 7 5 4 36 36 H 1.08994 * 109.47489 * 58.95297 * 8 7 5 37 37 H 1.09004 * 109.46999 * 298.95435 * 8 7 5 38 38 H 1.09004 * 109.47192 * 178.95952 * 8 7 5 39 39 H 1.08996 * 109.47158 * 294.20557 * 9 5 4 40 40 H 1.08994 * 109.46894 * 54.20587 * 9 5 4 41 41 H 0.97003 * 120.00284 * 4.90770 * 12 10 9 42 42 H 1.09000 * 109.47186 * 305.01614 * 13 12 10 43 43 H 1.08994 * 109.47229 * 65.02160 * 13 12 10 44 44 H 0.97006 * 120.00518 * 179.97438 * 18 17 15 45 45 H 1.08997 * 117.49606 * 359.97438 * 23 14 13 46 46 H 1.08994 * 117.49586 * 145.02549 * 23 14 13 47 47 H 1.09006 * 117.50125 * 214.97715 * 24 14 13 48 48 H 1.09007 * 117.50198 * 359.97303 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8849 -0.0013 6 1 3.6452 3.4237 -0.8431 7 6 3.6757 3.5694 1.3060 8 6 4.2766 2.8064 2.4882 9 6 5.6049 2.8867 -0.1275 10 6 6.0953 4.3044 -0.2713 11 8 5.2997 5.2163 -0.3505 12 7 7.4182 4.5589 -0.3117 13 6 7.8972 5.9430 -0.3429 14 6 9.4178 5.9528 -0.5122 15 6 9.9358 5.3080 -1.7719 16 1 10.2097 4.2633 -1.7705 17 6 10.0598 6.0516 -2.9263 18 7 10.5209 5.4913 -4.0231 19 14 9.5729 7.8550 -2.9324 20 1 10.7586 8.6890 -2.6102 21 1 9.0583 8.2243 -4.2756 22 1 8.5147 8.0855 -1.9163 23 6 10.2702 5.8197 0.7515 24 6 10.1808 7.1647 0.0262 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9331 0.9286 -0.8908 33 1 3.9338 0.9285 0.8892 34 1 2.5892 3.5756 1.3920 35 1 4.0463 4.5945 1.3091 36 1 5.3621 2.7842 2.3925 37 1 3.8917 1.7866 2.4958 38 1 4.0039 3.3045 3.4186 39 1 6.0438 2.4390 0.7641 40 1 5.8974 2.3103 -1.0051 41 1 8.0532 3.8257 -0.3202 42 1 7.4353 6.4686 -1.1787 43 1 7.6323 6.4403 0.5901 44 1 10.6078 6.0144 -4.8354 45 1 9.7476 5.7257 1.7034 46 1 11.2056 5.2661 0.6715 47 1 11.0576 7.4955 -0.5306 48 1 9.5994 7.9554 0.5006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431102156.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:53 Heat of formation + Delta-G solvation = -55.075989 kcal Electronic energy + Delta-G solvation = -22588.522996 eV Core-core repulsion = 19449.726517 eV Total energy + Delta-G solvation = -3138.796478 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.57849 -37.64213 -36.79179 -34.44066 -33.36303 -32.14047 -30.24403 -29.51204 -26.75642 -25.50859 -24.36682 -23.63886 -21.76957 -21.32767 -19.88990 -19.31831 -18.69352 -16.73703 -16.27810 -16.01962 -15.60025 -15.17569 -14.79200 -14.55820 -14.21682 -13.88058 -13.73201 -13.29379 -12.83752 -12.75717 -12.64802 -12.61553 -12.41713 -12.22128 -12.13049 -11.63982 -11.43749 -11.33663 -11.17200 -10.94973 -10.78446 -10.70827 -10.51944 -10.37263 -10.34965 -10.23681 -10.17762 -9.68233 -9.24304 -9.17826 -8.65387 -8.57296 -8.22755 -6.17019 -4.21722 3.19944 3.27885 3.38521 3.43967 3.79953 4.39273 4.61408 4.75145 4.83299 4.89320 4.98060 5.04956 5.10618 5.14307 5.28432 5.39031 5.46733 5.49728 5.58899 5.62110 5.68433 5.70243 5.73042 5.78626 5.85544 5.86454 5.97091 6.00743 6.03285 6.06052 6.06174 6.20191 6.23401 6.24550 6.35289 6.40701 6.47526 6.54238 6.62619 6.69758 6.98918 7.07043 7.19746 7.66894 8.23682 8.39503 8.82631 8.85112 9.46284 10.94262 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025181 B = 0.003425 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.688876 B = 8172.289635 C = 8604.516577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.118 4.118 5 C -0.070 4.070 6 H 0.078 0.922 7 C -0.124 4.124 8 C -0.156 4.156 9 C -0.141 4.141 10 C 0.506 3.494 11 O -0.556 6.556 12 N -0.704 5.704 13 C 0.156 3.844 14 C -0.015 4.015 15 C -0.490 4.490 16 H 0.078 0.922 17 C 0.080 3.920 18 N -0.895 5.895 19 Si 0.879 3.121 20 H -0.279 1.279 21 H -0.294 1.294 22 H -0.257 1.257 23 C -0.179 4.179 24 C -0.194 4.194 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.403 0.597 42 H 0.064 0.936 43 H 0.040 0.960 44 H 0.265 0.735 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.090 0.910 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.664 -8.737 10.509 19.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.156 4.156 5 C -0.089 4.089 6 H 0.096 0.904 7 C -0.161 4.161 8 C -0.213 4.213 9 C -0.181 4.181 10 C 0.293 3.707 11 O -0.436 6.436 12 N -0.353 5.353 13 C 0.032 3.968 14 C -0.016 4.016 15 C -0.527 4.527 16 H 0.096 0.904 17 C -0.123 4.123 18 N -0.532 5.532 19 Si 0.707 3.293 20 H -0.205 1.205 21 H -0.221 1.221 22 H -0.181 1.181 23 C -0.216 4.216 24 C -0.232 4.232 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.238 0.762 42 H 0.083 0.917 43 H 0.058 0.942 44 H 0.075 0.925 45 H 0.091 0.909 46 H 0.106 0.894 47 H 0.108 0.892 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.165 -8.047 10.263 19.254 hybrid contribution 0.282 0.689 -0.238 0.782 sum -13.883 -7.358 10.024 18.637 Atomic orbital electron populations 1.21781 0.96180 1.01315 1.01767 1.21542 0.95605 0.97293 1.01826 1.21651 0.95598 0.96298 1.02245 1.21721 0.95341 0.96475 1.02034 1.20893 0.93234 0.95574 0.99174 0.90386 1.21631 1.00168 1.00830 0.93517 1.21908 1.01083 1.00209 0.98071 1.21808 0.97387 0.94872 1.04003 1.20590 0.82537 0.91182 0.76440 1.90617 1.54817 1.47254 1.50902 1.45872 1.06460 1.09846 1.73124 1.21087 0.94589 0.81741 0.99363 1.19629 0.88865 0.98410 0.94704 1.20170 1.43606 0.97970 0.91003 0.90406 1.24964 0.93711 0.98457 0.95170 1.69880 1.45178 1.36957 1.01189 0.86853 0.79656 0.85474 0.77306 1.20482 1.22059 1.18068 1.22859 1.02731 1.00426 0.95622 1.22942 1.03653 0.91352 1.05245 0.92866 0.92795 0.93032 0.92154 0.92235 0.91757 0.92075 0.92063 0.91620 0.92348 0.90327 0.92692 0.92733 0.93330 0.89092 0.89083 0.76225 0.91744 0.94181 0.92479 0.90929 0.89426 0.89201 0.90768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.13 -0.99 5.93 -26.73 -0.16 -1.15 16 3 C -0.12 -1.08 4.97 -26.73 -0.13 -1.22 16 4 C -0.12 -1.14 4.46 -26.73 -0.12 -1.26 16 5 C -0.07 -0.85 1.80 -90.62 -0.16 -1.01 16 6 H 0.08 1.10 7.86 -51.93 -0.41 0.69 16 7 C -0.12 -1.51 5.21 -26.73 -0.14 -1.65 16 8 C -0.16 -1.62 9.22 37.16 0.34 -1.28 16 9 C -0.14 -1.82 4.98 -27.88 -0.14 -1.96 16 10 C 0.51 8.91 7.47 -10.98 -0.08 8.83 16 11 O -0.56 -11.57 14.16 5.56 0.08 -11.49 16 12 N -0.70 -13.03 5.40 -60.30 -0.33 -13.36 16 13 C 0.16 3.29 5.25 -4.04 -0.02 3.26 16 14 C -0.01 -0.33 0.86 -155.66 -0.13 -0.46 16 15 C -0.49 -12.86 9.11 -34.44 -0.31 -13.17 16 16 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 17 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 18 N -0.90 -26.53 13.96 55.43 0.77 -25.75 16 19 Si 0.88 21.59 24.84 -169.99 -4.22 17.36 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.26 -6.08 5.71 56.52 0.32 -5.75 16 23 C -0.18 -3.41 9.95 -26.69 -0.27 -3.68 16 24 C -0.19 -3.99 7.51 -26.69 -0.20 -4.19 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.58 6.58 -51.93 -0.34 0.24 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.59 6.19 -51.93 -0.32 0.27 16 34 H 0.06 0.66 6.59 -51.93 -0.34 0.31 16 35 H 0.08 1.19 6.17 -51.93 -0.32 0.87 16 36 H 0.05 0.59 6.26 -51.93 -0.33 0.26 16 37 H 0.05 0.50 6.37 -51.93 -0.33 0.17 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 1.01 6.13 -51.93 -0.32 0.69 16 40 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.40 6.92 8.33 -40.82 -0.34 6.58 16 42 H 0.06 1.53 6.69 -51.93 -0.35 1.18 16 43 H 0.04 0.80 8.11 -51.93 -0.42 0.38 16 44 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 46 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 47 H 0.09 1.94 7.13 -51.93 -0.37 1.57 16 48 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 366.86 15.07 5.53 5.53 Total: -1.00 -29.81 366.86 -8.32 -38.13 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -8.90 Total: 7.14 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -1.26 Total: -17.56 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.45 Total: -39.12 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.08 Total: -11.49 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.22 Total: 17.36 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.81 -8.32 -38.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431102156.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.948 kcal (2) G-P(sol) polarization free energy of solvation -29.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds