Wall clock time and date at job start Tue Mar 31 2020 06:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47188 * 2 1 4 4 C 1.52997 * 109.47217 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47481 * 185.11203 * 4 3 2 6 6 H 1.09000 * 109.46696 * 55.45834 * 5 4 3 7 7 C 1.52993 * 109.46841 * 295.46412 * 5 4 3 8 8 C 1.53003 * 109.47497 * 304.97517 * 7 5 4 9 9 C 1.53000 * 109.47088 * 175.46292 * 5 4 3 10 10 C 1.50701 * 109.47008 * 185.00208 * 9 5 4 11 11 O 1.21288 * 119.99940 * 0.27806 * 10 9 5 12 12 N 1.34772 * 120.00264 * 179.97438 * 10 9 5 13 13 C 1.46502 * 120.00366 * 180.02562 * 12 10 9 14 14 C 1.52991 * 109.47286 * 175.18108 * 13 12 10 15 15 C 1.50705 * 115.55185 * 55.73383 * 14 13 12 16 16 H 1.08007 * 119.99525 * 273.80860 * 15 14 13 17 17 C 1.37875 * 120.00387 * 93.80472 * 15 14 13 18 18 N 1.31520 * 119.99784 * 354.46214 * 17 15 14 19 19 Si 1.86795 * 120.00167 * 174.45348 * 17 15 14 20 20 H 1.48504 * 109.47078 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46841 * 120.00118 * 19 17 15 22 22 H 1.48498 * 109.47561 * 240.00696 * 19 17 15 23 23 C 1.52995 * 117.50187 * 270.06160 * 14 13 12 24 24 C 1.53003 * 117.49891 * 201.39873 * 14 13 12 25 25 H 1.09000 * 109.47374 * 59.99378 * 1 2 3 26 26 H 1.08992 * 109.47362 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46398 * 299.99693 * 1 2 3 28 28 H 1.09002 * 109.46398 * 240.00307 * 2 1 3 29 29 H 1.09000 * 109.47374 * 120.00622 * 2 1 3 30 30 H 1.08997 * 109.47484 * 60.00459 * 3 2 1 31 31 H 1.09009 * 109.47471 * 300.00382 * 3 2 1 32 32 H 1.08998 * 109.47262 * 65.11320 * 4 3 2 33 33 H 1.09005 * 109.47316 * 305.11124 * 4 3 2 34 34 H 1.08995 * 109.47399 * 64.97937 * 7 5 4 35 35 H 1.09006 * 109.47015 * 184.98215 * 7 5 4 36 36 H 1.09004 * 109.46813 * 305.25424 * 8 7 5 37 37 H 1.09004 * 109.46880 * 65.25063 * 8 7 5 38 38 H 1.08994 * 109.47433 * 185.24871 * 8 7 5 39 39 H 1.08990 * 109.47197 * 64.99888 * 9 5 4 40 40 H 1.09003 * 109.46818 * 304.99542 * 9 5 4 41 41 H 0.97005 * 119.99958 * 0.02562 * 12 10 9 42 42 H 1.09005 * 109.46752 * 295.18548 * 13 12 10 43 43 H 1.08996 * 109.47118 * 55.17630 * 13 12 10 44 44 H 0.97000 * 119.99699 * 184.99747 * 18 17 15 45 45 H 1.09005 * 117.49591 * 0.02562 * 23 14 13 46 46 H 1.09001 * 117.50581 * 145.01626 * 23 14 13 47 47 H 1.08996 * 117.50068 * 214.97796 * 24 14 13 48 48 H 1.08997 * 117.49799 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0802 2.8792 0.1279 6 1 3.6523 3.3382 1.0191 7 6 3.6650 3.6802 -1.1077 8 6 4.1606 2.9677 -2.3678 9 6 5.6060 2.8704 0.2410 10 6 6.0992 4.2724 0.4906 11 8 5.3079 5.1876 0.5751 12 7 7.4192 4.5083 0.6259 13 6 7.8987 5.8711 0.8691 14 6 9.4106 5.8458 1.1021 15 6 10.2268 5.2114 0.0055 16 1 10.3885 4.1435 0.0016 17 6 10.7670 5.9940 -0.9928 18 7 10.4810 7.2765 -1.0503 19 14 11.9052 5.2331 -2.2634 20 1 12.0655 3.7842 -1.9798 21 1 11.3236 5.4104 -3.6183 22 1 13.2309 5.8993 -2.2027 23 6 9.9009 5.6684 2.5404 24 6 10.0300 7.0283 1.8497 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.9330 1.0101 -0.9331 33 1 3.9338 0.8512 0.8398 34 1 2.5785 3.7614 -1.1399 35 1 4.1026 4.6773 -1.0583 36 1 5.2356 2.8033 -2.2930 37 1 3.6524 2.0085 -2.4665 38 1 3.9471 3.5836 -3.2412 39 1 6.0369 2.4933 -0.6863 40 1 5.9052 2.2273 1.0687 41 1 8.0519 3.7757 0.5623 42 1 7.6747 6.4948 0.0036 43 1 7.4022 6.2793 1.7493 44 1 10.8016 7.8120 -1.7927 45 1 9.1462 5.5692 3.3207 46 1 10.8139 5.0930 2.6937 47 1 11.0279 7.3471 1.5488 48 1 9.3604 7.8245 2.1752 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431102157.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:56 Heat of formation + Delta-G solvation = -59.806540 kcal Electronic energy + Delta-G solvation = -22522.638598 eV Core-core repulsion = 19383.636987 eV Total energy + Delta-G solvation = -3139.001610 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.48212 -37.47173 -36.51759 -34.38794 -33.23066 -31.95764 -30.15750 -29.46606 -26.48415 -25.44135 -24.28617 -23.59840 -21.34648 -21.10957 -19.78133 -19.41130 -18.67501 -16.57342 -16.08771 -15.99978 -15.46952 -14.91925 -14.70062 -14.47069 -14.17210 -13.84286 -13.72420 -13.15460 -12.87500 -12.74876 -12.55364 -12.39852 -12.12487 -12.04563 -11.60923 -11.52573 -11.39671 -11.33100 -11.03457 -10.94194 -10.86885 -10.69388 -10.53615 -10.34015 -10.29532 -10.22090 -10.18423 -9.60664 -9.12047 -8.97211 -8.49013 -8.27140 -8.00981 -6.09976 -4.19543 3.22494 3.29064 3.31819 3.33545 3.94197 4.32844 4.65689 4.76961 4.87442 5.02010 5.08062 5.14908 5.15838 5.31723 5.36430 5.46936 5.51978 5.54632 5.61370 5.67942 5.73456 5.77098 5.82397 5.88173 5.89236 5.98560 6.05849 6.08224 6.12954 6.21964 6.31516 6.35381 6.40893 6.48945 6.55928 6.57464 6.71193 6.73633 6.89843 7.12910 7.33776 7.39707 7.55240 7.77880 8.32025 8.38143 8.81895 8.96392 9.47489 10.97236 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022808 B = 0.003398 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.361674 B = 8238.324663 C = 8808.870394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.119 4.119 5 C -0.068 4.068 6 H 0.075 0.925 7 C -0.126 4.126 8 C -0.155 4.155 9 C -0.141 4.141 10 C 0.503 3.497 11 O -0.558 6.558 12 N -0.704 5.704 13 C 0.164 3.836 14 C 0.022 3.978 15 C -0.500 4.500 16 H 0.060 0.940 17 C 0.073 3.927 18 N -0.874 5.874 19 Si 0.890 3.110 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.213 4.213 24 C -0.140 4.140 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.401 0.599 42 H 0.063 0.937 43 H 0.038 0.962 44 H 0.261 0.739 45 H 0.063 0.937 46 H 0.077 0.923 47 H 0.087 0.913 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.253 -12.249 1.247 18.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.156 4.156 5 C -0.087 4.087 6 H 0.093 0.907 7 C -0.163 4.163 8 C -0.213 4.213 9 C -0.181 4.181 10 C 0.289 3.711 11 O -0.438 6.438 12 N -0.352 5.352 13 C 0.040 3.960 14 C 0.022 3.978 15 C -0.537 4.537 16 H 0.078 0.922 17 C -0.131 4.131 18 N -0.510 5.510 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.250 4.250 24 C -0.178 4.178 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.110 0.890 40 H 0.104 0.896 41 H 0.236 0.764 42 H 0.082 0.918 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.082 0.918 46 H 0.096 0.904 47 H 0.106 0.894 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.701 -11.389 1.233 17.859 hybrid contribution 1.060 -0.594 -0.814 1.462 sum -12.642 -11.982 0.419 17.423 Atomic orbital electron populations 1.21782 0.96185 1.01295 1.01781 1.21547 0.95600 0.97333 1.01789 1.21635 0.95617 0.96221 1.02236 1.21730 0.95324 0.96537 1.02006 1.20883 0.93156 0.95078 0.99550 0.90679 1.21662 1.00415 1.00865 0.93350 1.21905 1.01347 1.00138 0.97869 1.21795 0.97396 0.95214 1.03675 1.20567 0.82713 0.90867 0.77000 1.90609 1.55014 1.46349 1.51808 1.46015 1.06487 1.11832 1.70908 1.20930 0.94338 0.81597 0.99118 1.19046 0.90081 0.99264 0.89439 1.20353 1.31671 0.93324 1.08383 0.92183 1.24998 0.95777 0.94683 0.97623 1.70007 1.44836 1.05689 1.30456 0.86580 0.80881 0.79481 0.81315 1.19677 1.21014 1.20953 1.23098 1.02131 1.02396 0.97423 1.22417 1.02032 0.89879 1.03475 0.92825 0.93052 0.92824 0.92224 0.92219 0.92106 0.91771 0.91542 0.92262 0.92556 0.89777 0.92608 0.92955 0.93271 0.89015 0.89562 0.76430 0.91845 0.94370 0.92913 0.91831 0.90435 0.89449 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.13 -1.00 5.93 -26.73 -0.16 -1.15 16 3 C -0.12 -1.09 4.83 -26.74 -0.13 -1.22 16 4 C -0.12 -1.16 4.35 -26.73 -0.12 -1.28 16 5 C -0.07 -0.84 1.82 -90.62 -0.16 -1.01 16 6 H 0.07 1.04 7.95 -51.93 -0.41 0.63 16 7 C -0.13 -1.67 5.12 -26.73 -0.14 -1.80 16 8 C -0.16 -1.85 9.12 37.16 0.34 -1.51 16 9 C -0.14 -1.87 5.04 -27.88 -0.14 -2.01 16 10 C 0.50 9.08 7.50 -10.99 -0.08 8.99 16 11 O -0.56 -11.83 14.00 5.55 0.08 -11.76 16 12 N -0.70 -13.56 5.42 -60.30 -0.33 -13.88 16 13 C 0.16 3.68 5.56 -4.05 -0.02 3.66 16 14 C 0.02 0.53 1.68 -155.66 -0.26 0.26 16 15 C -0.50 -12.70 8.18 -34.44 -0.28 -12.98 16 16 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 17 C 0.07 1.93 5.35 -17.82 -0.10 1.83 16 18 N -0.87 -24.10 12.36 55.43 0.69 -23.41 16 19 Si 0.89 20.32 29.54 -169.99 -5.02 15.29 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C -0.21 -4.50 9.93 -26.69 -0.27 -4.76 16 24 C -0.14 -3.24 8.97 -26.69 -0.24 -3.48 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.60 6.93 -51.92 -0.36 0.24 16 32 H 0.07 0.63 6.20 -51.93 -0.32 0.31 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.69 6.92 -51.93 -0.36 0.33 16 35 H 0.08 1.41 5.89 -51.93 -0.31 1.10 16 36 H 0.05 0.69 6.24 -51.93 -0.32 0.37 16 37 H 0.05 0.53 6.56 -51.93 -0.34 0.19 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.09 1.13 6.24 -51.93 -0.32 0.81 16 40 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.40 7.19 7.99 -40.82 -0.33 6.86 16 42 H 0.06 1.62 8.14 -51.93 -0.42 1.20 16 43 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 44 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 45 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 46 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 47 H 0.09 2.18 7.96 -51.93 -0.41 1.76 16 48 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 374.92 15.07 5.65 5.65 Total: -1.00 -28.19 374.92 -9.27 -37.46 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -8.95 Total: 7.84 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -1.39 Total: -17.20 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.36 Total: -37.29 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.08 Total: -11.76 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.19 -9.27 -37.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431102157.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.344 kcal (2) G-P(sol) polarization free energy of solvation -28.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds