Wall clock time and date at job start Tue Mar 31 2020 05:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46932 * 2 1 4 4 C 1.53003 * 109.46936 * 299.99730 * 3 2 1 5 5 C 1.52996 * 109.47741 * 300.00491 * 4 3 2 6 6 N 1.46896 * 109.47173 * 179.97438 * 5 4 3 7 7 C 1.46895 * 111.00200 * 298.59572 * 6 5 4 8 8 C 1.50703 * 109.47097 * 170.00284 * 7 6 5 9 9 H 1.07994 * 120.00126 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99752 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00109 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99928 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47072 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47131 * 119.99468 * 12 10 8 15 15 H 1.48493 * 109.47011 * 239.99458 * 12 10 8 16 16 C 1.46907 * 110.99852 * 174.64640 * 6 5 4 17 17 C 1.52998 * 109.46886 * 286.34578 * 16 6 5 18 18 H 1.09002 * 109.87156 * 309.15013 * 17 16 6 19 19 C 1.54100 * 109.87937 * 188.14204 * 17 16 6 20 20 C 1.54809 * 104.18933 * 238.39519 * 19 17 16 21 21 C 1.54997 * 102.09355 * 339.12050 * 20 19 17 22 22 O 1.43743 * 110.00715 * 70.23531 * 17 16 6 23 23 C 1.52999 * 109.47014 * 59.99587 * 5 4 3 24 24 C 1.53002 * 109.47199 * 240.00040 * 2 1 3 25 25 H 1.08999 * 109.47420 * 59.99893 * 1 2 3 26 26 H 1.08999 * 109.46677 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46866 * 300.00087 * 1 2 3 28 28 H 1.08999 * 109.47420 * 120.00107 * 2 1 3 29 29 H 1.08993 * 109.47190 * 180.02562 * 3 2 1 30 30 H 1.08991 * 109.47306 * 60.00041 * 3 2 1 31 31 H 1.09004 * 109.47069 * 179.97438 * 4 3 2 32 32 H 1.09007 * 109.46858 * 60.00368 * 4 3 2 33 33 H 1.09007 * 109.46845 * 299.99885 * 5 4 3 34 34 H 1.09000 * 109.47621 * 290.00665 * 7 6 5 35 35 H 1.09001 * 109.47057 * 50.00417 * 7 6 5 36 36 H 0.96999 * 120.00047 * 180.02562 * 11 10 8 37 37 H 1.08994 * 109.47267 * 166.34784 * 16 6 5 38 38 H 1.08994 * 109.47068 * 46.34028 * 16 6 5 39 39 H 1.09000 * 110.49207 * 119.72141 * 19 17 16 40 40 H 1.08998 * 110.59776 * 357.12907 * 19 17 16 41 41 H 1.09000 * 110.90902 * 97.31550 * 20 19 17 42 42 H 1.08997 * 110.90956 * 220.91907 * 20 19 17 43 43 H 1.08994 * 110.62344 * 155.52384 * 21 20 19 44 44 H 1.08999 * 110.61565 * 278.52098 * 21 20 19 45 45 H 1.08993 * 109.47215 * 60.00443 * 23 5 4 46 46 H 1.09003 * 109.46666 * 180.02562 * 23 5 4 47 47 H 1.08993 * 109.47240 * 179.97438 * 24 2 1 48 48 H 1.08994 * 109.46845 * 299.99841 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5300 2.1637 -1.2493 5 6 2.0399 1.4425 -2.4986 6 7 1.5497 2.1347 -3.6979 7 6 0.0816 2.1247 -3.7484 8 6 -0.3895 3.0437 -4.8460 9 1 0.3297 3.5811 -5.4462 10 6 -1.7388 3.1985 -5.0838 11 7 -2.6146 2.5438 -4.3531 12 14 -2.3228 4.3382 -6.4437 13 1 -1.1482 4.9523 -7.1133 14 1 -3.1092 3.5623 -7.4361 15 1 -3.1752 5.4062 -5.8625 16 6 2.1223 1.5464 -4.9162 17 6 3.5910 1.9570 -5.0391 18 1 3.6839 3.0376 -4.9303 19 6 4.1448 1.5188 -6.4088 20 6 5.3371 0.5957 -6.0583 21 6 5.6692 1.0308 -4.6081 22 8 4.3727 1.2953 -4.0306 23 6 1.5299 0.0000 -2.4985 24 6 2.0401 -0.7212 -1.2493 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.1299 1.4426 -0.0005 30 1 1.6767 1.9564 0.8899 31 1 1.8929 3.1916 -1.2491 32 1 0.4399 2.1637 -1.2493 33 1 3.1300 1.4425 -2.4986 34 1 -0.2683 1.1118 -3.9475 35 1 -0.3171 2.4656 -2.7930 36 1 -3.5638 2.6524 -4.5206 37 1 1.5711 1.9038 -5.7860 38 1 2.0521 0.4600 -4.8627 39 1 4.4863 2.3840 -6.9769 40 1 3.3890 0.9692 -6.9700 41 1 5.0404 -0.4526 -6.0915 42 1 6.1809 0.7810 -6.7229 43 1 6.1716 0.2261 -4.0714 44 1 6.2805 1.9333 -4.6087 45 1 0.4400 0.0000 -2.4984 46 1 1.8936 -0.5139 -3.3883 47 1 3.1300 -0.7209 -1.2495 48 1 1.6768 -1.7489 -1.2492 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000441463811.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:02 Heat of formation + Delta-G solvation = -64.108216 kcal Electronic energy + Delta-G solvation = -24330.879530 eV Core-core repulsion = 21191.691385 eV Total energy + Delta-G solvation = -3139.188145 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.61143 -38.63426 -35.60336 -32.54228 -31.95685 -30.68103 -30.18926 -29.26384 -26.70821 -25.91522 -24.06898 -22.44254 -22.25333 -21.53051 -20.58596 -19.42992 -17.83826 -16.57768 -15.99872 -15.56868 -15.49020 -14.88365 -14.60168 -14.19971 -14.07107 -13.60521 -13.42620 -13.24239 -12.89765 -12.43732 -12.26184 -12.01143 -11.90977 -11.72942 -11.58818 -11.38896 -11.19049 -11.08190 -10.84670 -10.80051 -10.68612 -10.53038 -10.47540 -10.38000 -10.19672 -9.91593 -9.71838 -9.55818 -9.31185 -9.18080 -8.99692 -8.36558 -7.00014 -5.98412 -3.98748 3.31921 3.39732 3.43904 4.15892 4.45583 4.76787 4.84018 5.00287 5.11062 5.15991 5.20955 5.29433 5.37101 5.45099 5.58969 5.73341 5.76891 5.78644 5.82181 5.86448 5.89749 5.91071 5.98968 6.06040 6.06752 6.10506 6.17105 6.27103 6.30882 6.41345 6.43314 6.45716 6.48981 6.60987 6.69459 6.74721 6.78373 6.88878 7.04079 7.17855 7.29829 7.46452 7.52748 7.88127 8.22065 8.36680 8.69506 9.10003 9.65043 11.12147 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.010943 B = 0.007576 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.213777 B = 3694.776039 C = 5780.098987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 C -0.109 4.109 4 C -0.114 4.114 5 C 0.086 3.914 6 N -0.530 5.530 7 C 0.189 3.811 8 C -0.506 4.506 9 H 0.061 0.939 10 C 0.055 3.945 11 N -0.898 5.898 12 Si 0.893 3.107 13 H -0.273 1.273 14 H -0.286 1.286 15 H -0.285 1.285 16 C 0.062 3.938 17 C 0.082 3.918 18 H 0.072 0.928 19 C -0.151 4.151 20 C -0.154 4.154 21 C 0.042 3.958 22 O -0.365 6.365 23 C -0.150 4.150 24 C -0.105 4.105 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.091 0.909 34 H -0.009 1.009 35 H 0.036 0.964 36 H 0.259 0.741 37 H 0.093 0.907 38 H 0.031 0.969 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.054 0.946 45 H 0.068 0.932 46 H 0.054 0.946 47 H 0.056 0.944 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.569 -5.358 2.681 14.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.108 4.108 3 C -0.147 4.147 4 C -0.152 4.152 5 C -0.022 4.022 6 N -0.252 5.252 7 C 0.064 3.936 8 C -0.545 4.545 9 H 0.080 0.920 10 C -0.146 4.146 11 N -0.537 5.537 12 Si 0.721 3.279 13 H -0.197 1.197 14 H -0.212 1.212 15 H -0.211 1.211 16 C -0.067 4.067 17 C 0.025 3.975 18 H 0.090 0.910 19 C -0.190 4.190 20 C -0.192 4.192 21 C -0.035 4.035 22 O -0.285 6.285 23 C -0.189 4.189 24 C -0.143 4.143 25 H 0.090 0.910 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.009 0.991 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.049 0.951 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.435 -4.915 2.928 14.602 hybrid contribution -0.693 -0.236 -1.049 1.280 sum 12.742 -5.151 1.879 13.871 Atomic orbital electron populations 1.21953 0.95309 1.01162 1.02502 1.21072 0.96012 0.96229 0.97438 1.21528 0.99963 0.95111 0.98142 1.21649 1.01722 0.98773 0.93048 1.21783 1.00011 0.89911 0.90541 1.62277 1.11237 1.51876 0.99852 1.19769 0.80628 0.95406 0.97790 1.21264 0.91336 1.25552 1.16306 0.92034 1.24968 0.96855 0.96153 0.96584 1.69965 1.01476 1.42433 1.39871 0.86524 0.78718 0.80718 0.81955 1.19740 1.21234 1.21086 1.22241 0.91596 0.96929 0.95901 1.22934 0.92169 0.96970 0.85473 0.90962 1.22974 0.97922 0.99695 0.98375 1.23098 0.98332 1.00387 0.97344 1.23479 0.87571 0.99524 0.92893 1.88949 1.23291 1.79343 1.36879 1.22211 1.01747 0.98225 0.96759 1.21454 0.99911 0.98069 0.94868 0.91024 0.93473 0.93325 0.92350 0.92571 0.92660 0.92063 0.91034 0.89146 0.99094 0.94624 0.93109 0.88894 0.95088 0.91001 0.90414 0.90895 0.90919 0.89832 0.92819 0.91296 0.92728 0.92555 0.93143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.50 37.16 0.32 -2.00 16 2 C -0.09 -1.28 3.20 -90.61 -0.29 -1.57 16 3 C -0.11 -1.63 5.45 -26.73 -0.15 -1.77 16 4 C -0.11 -2.07 4.76 -26.73 -0.13 -2.20 16 5 C 0.09 1.62 2.01 -67.72 -0.14 1.49 16 6 N -0.53 -11.44 4.43 -228.09 -1.01 -12.45 16 7 C 0.19 4.84 3.79 -4.98 -0.02 4.82 16 8 C -0.51 -14.05 8.26 -34.44 -0.28 -14.33 16 9 H 0.06 1.70 7.28 -52.49 -0.38 1.31 16 10 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 11 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 12 Si 0.89 21.60 29.54 -169.99 -5.02 16.57 16 13 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 16 C 0.06 1.21 4.30 -3.82 -0.02 1.19 16 17 C 0.08 1.34 3.58 -26.16 -0.09 1.25 16 18 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 19 C -0.15 -1.97 6.64 -25.20 -0.17 -2.14 16 20 C -0.15 -1.69 7.15 -24.72 -0.18 -1.87 16 21 C 0.04 0.50 7.72 38.21 0.29 0.80 16 22 O -0.37 -5.82 8.40 -35.23 -0.30 -6.12 16 23 C -0.15 -2.71 4.27 -26.73 -0.11 -2.82 16 24 C -0.10 -1.58 5.45 -26.73 -0.15 -1.72 16 25 H 0.07 1.29 4.81 -51.93 -0.25 1.04 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.07 1.45 4.52 -51.93 -0.23 1.21 16 33 H 0.09 1.71 5.31 -51.93 -0.28 1.43 16 34 H -0.01 -0.24 6.84 -51.93 -0.36 -0.60 16 35 H 0.04 0.98 5.88 -51.93 -0.31 0.68 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.09 1.96 6.57 -51.93 -0.34 1.62 16 38 H 0.03 0.61 5.95 -51.93 -0.31 0.30 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.08 1.02 7.70 -51.93 -0.40 0.62 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 1.40 4.89 -51.93 -0.25 1.15 16 46 H 0.05 1.01 6.29 -51.93 -0.33 0.68 16 47 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 345.84 15.07 5.21 5.21 Total: -1.00 -29.12 345.84 -10.07 -39.19 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -8.49 Total: 2.80 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: -1.20 Total: -19.41 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: -0.27 Total: -38.25 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.30 Total: -6.12 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.12 -10.07 -39.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441463811.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.915 kcal (2) G-P(sol) polarization free energy of solvation -29.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds