Wall clock time and date at job start Tue Mar 31 2020 05:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47273 * 2 1 4 4 C 1.53002 * 109.47079 * 300.00494 * 3 2 1 5 5 C 1.53004 * 109.46644 * 299.99931 * 4 3 2 6 6 N 1.46907 * 109.46608 * 180.02562 * 5 4 3 7 7 C 1.46900 * 110.99687 * 169.71191 * 6 5 4 8 8 C 1.50701 * 109.47192 * 296.28600 * 7 6 5 9 9 H 1.08000 * 119.99923 * 114.64924 * 8 7 6 10 10 C 1.37879 * 119.99927 * 294.64807 * 8 7 6 11 11 N 1.31509 * 119.99819 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 119.99924 * 180.02562 * 10 8 7 13 13 H 1.48508 * 109.46901 * 269.99932 * 12 10 8 14 14 H 1.48495 * 109.47205 * 149.99873 * 12 10 8 15 15 H 1.48498 * 109.47388 * 29.99630 * 12 10 8 16 16 C 1.46899 * 110.99936 * 293.66342 * 6 5 4 17 17 C 1.53000 * 109.46914 * 170.00347 * 16 6 5 18 18 H 1.08999 * 110.27792 * 59.30082 * 17 16 6 19 19 C 1.54955 * 110.30597 * 181.39139 * 17 16 6 20 20 C 1.55419 * 100.88722 * 155.28853 * 19 17 16 21 21 C 1.54378 * 102.30983 * 325.98688 * 20 19 17 22 22 O 1.43239 * 107.59048 * 21.29136 * 21 20 19 23 23 C 1.52995 * 109.47424 * 60.00218 * 5 4 3 24 24 C 1.53002 * 109.47032 * 299.99545 * 23 5 4 25 25 H 1.08995 * 109.47599 * 59.99584 * 1 2 3 26 26 H 1.08999 * 109.47043 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47201 * 299.99828 * 1 2 3 28 28 H 1.09003 * 109.47633 * 120.00124 * 2 1 3 29 29 H 1.08999 * 109.46998 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.46893 * 60.00348 * 3 2 1 31 31 H 1.08991 * 109.46946 * 179.97438 * 4 3 2 32 32 H 1.08995 * 109.46884 * 59.99446 * 4 3 2 33 33 H 1.09003 * 109.47337 * 299.99558 * 5 4 3 34 34 H 1.09000 * 109.47080 * 176.28523 * 7 6 5 35 35 H 1.09005 * 109.47127 * 56.28695 * 7 6 5 36 36 H 0.97005 * 120.00308 * 0.02562 * 11 10 8 37 37 H 1.08998 * 109.47128 * 290.00415 * 16 6 5 38 38 H 1.09000 * 109.47212 * 50.00276 * 16 6 5 39 39 H 1.09001 * 111.12473 * 273.27667 * 19 17 16 40 40 H 1.09000 * 111.12221 * 37.43837 * 19 17 16 41 41 H 1.09003 * 110.87276 * 207.75431 * 20 19 17 42 42 H 1.08988 * 110.93566 * 84.25541 * 20 19 17 43 43 H 1.09004 * 109.83263 * 261.77457 * 21 20 19 44 44 H 1.09005 * 109.90732 * 140.84452 * 21 20 19 45 45 H 1.09007 * 109.47435 * 59.99903 * 23 5 4 46 46 H 1.08998 * 109.47515 * 179.97438 * 23 5 4 47 47 H 1.08990 * 109.47213 * 300.00108 * 24 23 5 48 48 H 1.09001 * 109.47012 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1638 -1.2492 5 6 2.0399 1.4425 -2.4985 6 7 1.5506 2.1354 -3.6979 7 6 2.2112 1.6253 -4.9068 8 6 3.6867 1.9241 -4.8370 9 1 4.3990 1.1150 -4.7719 10 6 4.1272 3.2305 -4.8562 11 7 3.2597 4.2158 -4.9360 12 14 5.9560 3.6008 -4.7705 13 1 6.3658 3.7448 -3.3503 14 1 6.2400 4.8638 -5.4981 15 1 6.7162 2.4883 -5.3946 16 6 0.0900 2.0259 -3.8101 17 6 -0.4076 2.9572 -4.9174 18 1 0.0536 2.6930 -5.8689 19 6 -1.9514 2.8830 -5.0290 20 6 -2.2670 4.2679 -5.6599 21 6 -1.1861 5.1713 -5.0283 22 8 -0.1187 4.3247 -4.5859 23 6 1.5299 0.0001 -2.4985 24 6 2.0400 -0.7212 -1.2493 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 0.8900 31 1 1.8929 3.1915 -1.2489 32 1 0.4400 2.1637 -1.2491 33 1 3.1299 1.4425 -2.4986 34 1 1.7839 2.1082 -5.7856 35 1 2.0615 0.5478 -4.9754 36 1 2.3100 4.0234 -4.9809 37 1 -0.1798 0.9978 -4.0515 38 1 -0.3695 2.3093 -2.8632 39 1 -2.2590 2.0705 -5.6872 40 1 -2.4121 2.7856 -4.0460 41 1 -3.2654 4.6038 -5.3798 42 1 -2.1604 4.2353 -6.7441 43 1 -1.6055 5.7117 -4.1796 44 1 -0.8140 5.8786 -5.7696 45 1 0.4398 0.0000 -2.4985 46 1 1.8928 -0.5137 -3.3887 47 1 3.1299 -0.7212 -1.2493 48 1 1.6770 -1.7490 -1.2495 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000441463812.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:05 Heat of formation + Delta-G solvation = -62.908876 kcal Electronic energy + Delta-G solvation = -24624.097768 eV Core-core repulsion = 21484.961631 eV Total energy + Delta-G solvation = -3139.136138 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.48069 -38.58797 -35.72684 -32.39329 -31.67136 -30.68508 -30.33873 -28.85535 -26.72378 -25.75031 -23.90184 -22.50107 -21.88787 -21.35321 -20.81626 -19.36709 -17.84837 -16.59845 -16.22344 -15.67824 -15.36961 -14.47633 -14.28919 -14.26069 -13.81058 -13.60605 -13.32448 -13.15897 -12.97956 -12.61488 -12.39264 -12.17145 -11.85150 -11.61181 -11.53735 -11.35091 -11.22365 -11.16572 -10.84424 -10.64753 -10.63730 -10.57108 -10.42839 -10.29250 -10.00673 -9.78471 -9.69349 -9.55142 -9.33019 -8.81714 -8.37277 -8.10635 -6.86234 -5.99349 -3.80191 3.55751 3.58692 3.73987 4.32819 4.73792 4.77321 4.86002 5.04880 5.08584 5.13368 5.21417 5.33836 5.51888 5.59024 5.61762 5.74100 5.75912 5.79581 5.82571 5.83562 5.90021 5.94193 5.99441 6.03874 6.08225 6.10459 6.11888 6.18916 6.23271 6.27778 6.34289 6.36118 6.44052 6.53376 6.60024 6.64054 6.70402 6.77486 6.94495 7.09073 7.19837 7.40366 7.73249 8.13761 8.42750 8.67460 8.81680 9.28718 10.03152 11.46027 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.009917 B = 0.009248 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.712134 B = 3027.094704 C = 5128.512657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.112 4.112 4 C -0.109 4.109 5 C 0.103 3.897 6 N -0.507 5.507 7 C 0.175 3.825 8 C -0.618 4.618 9 H 0.040 0.960 10 C 0.039 3.961 11 N -0.886 5.886 12 Si 1.058 2.942 13 H -0.291 1.291 14 H -0.287 1.287 15 H -0.293 1.293 16 C 0.051 3.949 17 C 0.089 3.911 18 H 0.066 0.934 19 C -0.153 4.153 20 C -0.154 4.154 21 C 0.047 3.953 22 O -0.341 6.341 23 C -0.150 4.150 24 C -0.107 4.107 25 H 0.062 0.938 26 H 0.046 0.954 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.023 0.977 35 H -0.016 1.016 36 H 0.302 0.698 37 H 0.026 0.974 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.054 0.946 46 H 0.058 0.942 47 H 0.060 0.940 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.299 -4.682 5.435 12.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 C -0.150 4.150 4 C -0.147 4.147 5 C -0.006 4.006 6 N -0.230 5.230 7 C 0.052 3.948 8 C -0.657 4.657 9 H 0.058 0.942 10 C -0.173 4.173 11 N -0.520 5.520 12 Si 0.889 3.111 13 H -0.218 1.218 14 H -0.213 1.213 15 H -0.220 1.220 16 C -0.078 4.078 17 C 0.031 3.969 18 H 0.084 0.916 19 C -0.191 4.191 20 C -0.192 4.192 21 C -0.030 4.030 22 O -0.259 6.259 23 C -0.189 4.189 24 C -0.145 4.145 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.041 0.959 35 H 0.002 0.998 36 H 0.116 0.884 37 H 0.044 0.956 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.913 -2.848 5.562 10.885 hybrid contribution -1.564 -2.213 -0.224 2.719 sum -10.476 -5.061 5.338 12.801 Atomic orbital electron populations 1.21912 0.95900 1.00867 1.01781 1.21077 0.95527 0.96547 0.97656 1.21550 1.00674 0.94744 0.98026 1.21589 0.99774 0.99766 0.93530 1.21408 1.01186 0.88486 0.89543 1.62747 1.00311 1.56052 1.03877 1.19888 0.95453 0.91273 0.88235 1.21706 0.90412 0.94556 1.59005 0.94181 1.25471 1.05582 0.92582 0.93627 1.70449 1.06398 1.34324 1.40855 0.83733 0.75574 0.75326 0.76505 1.21765 1.21291 1.21997 1.22241 0.93103 0.94985 0.97450 1.23013 0.91819 0.83751 0.98309 0.91582 1.23336 0.97212 0.97261 1.01307 1.23108 0.99596 0.95645 1.00849 1.23053 0.87947 0.93947 0.98049 1.88734 1.40902 1.15689 1.80589 1.22258 1.00138 0.99262 0.97280 1.21470 1.00578 0.97822 0.94653 0.91920 0.93500 0.93326 0.92160 0.92067 0.92768 0.91500 0.92814 0.88993 0.95907 0.99804 0.88449 0.95592 0.91722 0.90636 0.90771 0.90790 0.90962 0.92272 0.92055 0.92698 0.92359 0.92105 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 8.50 37.15 0.32 -1.55 16 2 C -0.09 -1.23 3.19 -90.62 -0.29 -1.52 16 3 C -0.11 -1.70 5.45 -26.73 -0.15 -1.85 16 4 C -0.11 -1.99 4.88 -26.73 -0.13 -2.12 16 5 C 0.10 2.12 2.05 -67.71 -0.14 1.98 16 6 N -0.51 -11.59 3.43 -228.08 -0.78 -12.37 16 7 C 0.18 4.50 4.18 -4.97 -0.02 4.48 16 8 C -0.62 -17.64 7.93 -34.44 -0.27 -17.92 16 9 H 0.04 1.16 7.81 -52.49 -0.41 0.75 16 10 C 0.04 1.13 5.41 -17.82 -0.10 1.04 16 11 N -0.89 -27.24 13.56 55.43 0.75 -26.49 16 12 Si 1.06 25.99 29.90 -169.99 -5.08 20.91 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 C 0.05 0.98 3.62 -3.82 -0.01 0.97 16 17 C 0.09 1.67 3.30 -25.70 -0.08 1.59 16 18 H 0.07 1.38 6.43 -51.93 -0.33 1.04 16 19 C -0.15 -2.14 6.58 -24.41 -0.16 -2.30 16 20 C -0.15 -2.00 7.02 -24.72 -0.17 -2.17 16 21 C 0.05 0.76 7.80 37.88 0.30 1.06 16 22 O -0.34 -7.20 9.97 -35.23 -0.35 -7.55 16 23 C -0.15 -2.65 4.19 -26.73 -0.11 -2.76 16 24 C -0.11 -1.61 5.45 -26.73 -0.15 -1.76 16 25 H 0.06 0.87 4.81 -51.93 -0.25 0.62 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.05 0.93 4.66 -51.93 -0.24 0.69 16 33 H 0.09 2.22 6.91 -51.93 -0.36 1.86 16 34 H 0.02 0.63 5.82 -51.93 -0.30 0.32 16 35 H -0.02 -0.40 6.49 -51.93 -0.34 -0.74 16 36 H 0.30 9.12 5.51 -40.82 -0.22 8.90 16 37 H 0.03 0.48 6.83 -51.93 -0.35 0.12 16 38 H 0.06 1.20 6.10 -51.93 -0.32 0.88 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.97 8.06 -51.93 -0.42 0.55 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.89 8.14 -51.94 -0.42 0.47 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.05 0.92 4.84 -51.93 -0.25 0.67 16 46 H 0.06 1.13 6.63 -51.93 -0.34 0.79 16 47 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 344.49 15.07 5.19 5.19 Total: -1.00 -30.97 344.49 -9.88 -40.85 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -8.43 Total: 2.28 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: -1.17 Total: -22.83 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: -0.03 Total: -38.86 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -0.35 Total: -7.55 kcal Atomic # 14 Polarization: 25.99 SS G_CDS: -5.08 Total: 20.91 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.97 -9.88 -40.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441463812.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.054 kcal (2) G-P(sol) polarization free energy of solvation -30.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds