Wall clock time and date at job start Tue Mar 31 2020 05:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47178 * 2 1 4 4 C 1.52998 * 109.47342 * 120.00298 * 2 1 3 5 5 C 1.53003 * 109.47378 * 63.43203 * 4 2 1 6 6 C 1.52997 * 109.47297 * 63.47856 * 5 4 2 7 7 C 1.52997 * 109.47245 * 187.83137 * 6 5 4 8 8 C 1.53003 * 109.46939 * 166.68607 * 7 6 5 9 9 C 1.53001 * 109.46882 * 286.68525 * 7 6 5 10 10 C 1.50696 * 109.47321 * 183.48309 * 5 4 2 11 11 O 1.21297 * 119.99731 * 284.10094 * 10 5 4 12 12 N 1.34774 * 120.00257 * 104.09457 * 10 5 4 13 13 C 1.37098 * 120.00040 * 183.68149 * 12 10 5 14 14 H 1.07999 * 120.00019 * 18.53136 * 13 12 10 15 15 C 1.38955 * 119.99825 * 198.53057 * 13 12 10 16 16 N 1.31411 * 119.99532 * 214.48381 * 15 13 12 17 17 Si 1.86796 * 120.00025 * 34.48259 * 15 13 12 18 18 H 1.48495 * 109.47233 * 263.35368 * 17 15 13 19 19 H 1.48498 * 109.47313 * 23.35912 * 17 15 13 20 20 H 1.48507 * 109.47035 * 143.35589 * 17 15 13 21 21 C 1.46502 * 120.00019 * 3.68598 * 12 10 5 22 22 C 1.53001 * 117.49865 * 300.14498 * 21 12 10 23 23 C 1.52994 * 117.49870 * 231.51963 * 21 12 10 24 24 H 1.09001 * 109.47116 * 299.99845 * 1 2 3 25 25 H 1.09007 * 109.47071 * 60.00100 * 1 2 3 26 26 H 1.09000 * 109.47260 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47116 * 240.00155 * 2 1 3 28 28 H 1.09000 * 109.47218 * 304.92624 * 3 2 1 29 29 H 1.08995 * 109.47002 * 64.92827 * 3 2 1 30 30 H 1.08995 * 109.47168 * 184.93160 * 3 2 1 31 31 H 1.09007 * 109.46929 * 303.43120 * 4 2 1 32 32 H 1.08998 * 109.47290 * 183.43303 * 4 2 1 33 33 H 1.09002 * 109.46643 * 303.47800 * 5 4 2 34 34 H 1.09000 * 109.46968 * 307.83305 * 6 5 4 35 35 H 1.08995 * 109.46776 * 67.82650 * 6 5 4 36 36 H 1.08995 * 109.46978 * 46.68724 * 7 6 5 37 37 H 1.08996 * 109.46996 * 55.08066 * 8 7 6 38 38 H 1.09002 * 109.46488 * 175.07804 * 8 7 6 39 39 H 1.08992 * 109.47237 * 295.07883 * 8 7 6 40 40 H 1.08991 * 109.47313 * 71.61317 * 9 7 6 41 41 H 1.08996 * 109.46988 * 191.61596 * 9 7 6 42 42 H 1.09001 * 109.47233 * 311.61245 * 9 7 6 43 43 H 0.97007 * 119.99476 * 179.97438 * 16 15 13 44 44 H 1.09000 * 115.55015 * 85.84737 * 21 12 10 45 45 H 1.09001 * 117.49679 * 0.02562 * 22 21 12 46 46 H 1.08991 * 117.49809 * 145.01791 * 22 21 12 47 47 H 1.09001 * 117.49991 * 214.97606 * 23 21 12 48 48 H 1.09001 * 117.50026 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6018 -2.1866 1.2067 6 6 2.2511 -2.8786 0.0066 7 6 1.6649 -4.2830 -0.1509 8 6 2.0543 -4.8477 -1.5186 9 6 2.2142 -5.1913 0.9510 10 6 2.0302 -2.8761 2.4764 11 8 3.1918 -3.1872 2.6353 12 7 1.1228 -3.1468 3.4354 13 6 1.5246 -3.7053 4.6213 14 1 2.5622 -3.6566 4.9169 15 6 0.5968 -4.3340 5.4428 16 7 0.7252 -4.2688 6.7489 17 14 -0.8329 -5.2716 4.6904 18 1 -2.0342 -4.3993 4.6571 19 1 -0.4819 -5.6835 3.3075 20 1 -1.1193 -6.4775 5.5084 21 6 -0.2930 -2.8445 3.2106 22 6 -0.6688 -1.3875 2.9333 23 6 -1.0187 -2.0250 4.2795 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6064 1.9812 -0.8426 29 1 1.7505 1.9302 0.9308 30 1 3.1263 1.4437 -0.0883 31 1 1.6273 -0.2442 2.1382 32 1 3.1283 -0.6683 1.2805 33 1 0.5170 -2.2388 1.1132 34 1 2.0553 -2.2999 -0.8961 35 1 3.3269 -2.9496 0.1664 36 1 0.5788 -4.2342 -0.0738 37 1 3.1380 -4.8152 -1.6299 38 1 1.7117 -5.8796 -1.5965 39 1 1.5903 -4.2506 -2.3036 40 1 1.7705 -4.9124 1.9066 41 1 1.9664 -6.2282 0.7242 42 1 3.2971 -5.0805 1.0070 43 1 0.0773 -4.7074 7.3224 44 1 -0.8631 -3.6182 2.6964 45 1 0.1373 -0.6540 2.9177 46 1 -1.4862 -1.2026 2.2365 47 1 -2.0663 -2.2593 4.4683 48 1 -0.4429 -1.7111 5.1502 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448786857.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:33 Heat of formation + Delta-G solvation = -23.414976 kcal Electronic energy + Delta-G solvation = -24858.909874 eV Core-core repulsion = 21721.486320 eV Total energy + Delta-G solvation = -3137.423554 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.82955 -37.16359 -36.26131 -35.16783 -33.05997 -31.49347 -30.99133 -27.10678 -26.73774 -26.00580 -25.47745 -22.77217 -21.94222 -21.72578 -19.90466 -19.50976 -18.15525 -17.11755 -16.34978 -15.60198 -15.28212 -14.58582 -14.44573 -13.93501 -13.89198 -13.80540 -13.36643 -13.15158 -12.76907 -12.64495 -12.33376 -12.17143 -12.09256 -11.86445 -11.73810 -11.52214 -11.26204 -11.15111 -11.10747 -10.88720 -10.84746 -10.66283 -10.45200 -10.31751 -10.16937 -10.12389 -9.95187 -9.77774 -9.68063 -9.52579 -8.95718 -8.22524 -7.85332 -6.41954 -3.73622 3.10706 3.28431 3.32122 3.81935 4.18101 4.32459 4.36472 4.91623 4.98610 5.04861 5.11934 5.24432 5.30166 5.34089 5.37286 5.44750 5.53006 5.60352 5.68611 5.77340 5.78192 5.85587 5.89739 5.90017 5.98484 6.02218 6.10467 6.12914 6.16077 6.20053 6.22971 6.26990 6.35457 6.38702 6.41708 6.46703 6.56177 6.58937 6.70175 6.75490 6.82144 6.86747 7.10155 7.55578 8.28667 8.56378 9.06431 9.46003 9.91977 10.69305 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015514 B = 0.007717 C = 0.006301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.427897 B = 3627.602000 C = 4442.505957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.146 4.146 4 C -0.101 4.101 5 C -0.105 4.105 6 C -0.098 4.098 7 C -0.096 4.096 8 C -0.143 4.143 9 C -0.152 4.152 10 C 0.473 3.527 11 O -0.572 6.572 12 N -0.436 5.436 13 C -0.326 4.326 14 H 0.112 0.888 15 C 0.075 3.925 16 N -0.847 5.847 17 Si 0.852 3.148 18 H -0.271 1.271 19 H -0.268 1.268 20 H -0.291 1.291 21 C 0.053 3.947 22 C -0.191 4.191 23 C -0.162 4.162 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.048 0.952 40 H 0.075 0.925 41 H 0.037 0.963 42 H 0.060 0.940 43 H 0.272 0.728 44 H 0.097 0.903 45 H 0.102 0.898 46 H 0.093 0.907 47 H 0.091 0.909 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.241 6.698 -13.715 15.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.139 4.139 5 C -0.126 4.126 6 C -0.136 4.136 7 C -0.114 4.114 8 C -0.200 4.200 9 C -0.210 4.210 10 C 0.263 3.737 11 O -0.454 6.454 12 N -0.156 5.156 13 C -0.451 4.451 14 H 0.129 0.871 15 C -0.132 4.132 16 N -0.482 5.482 17 Si 0.678 3.322 18 H -0.197 1.197 19 H -0.193 1.193 20 H -0.218 1.218 21 C -0.053 4.053 22 C -0.228 4.228 23 C -0.199 4.199 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.114 0.886 45 H 0.120 0.880 46 H 0.111 0.889 47 H 0.109 0.891 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.701 6.483 -13.398 15.338 hybrid contribution -1.027 -0.790 -0.152 1.305 sum -4.728 5.693 -13.551 15.440 Atomic orbital electron populations 1.21964 0.95502 1.01970 1.01299 1.21175 0.95825 0.95738 0.98804 1.21833 1.00831 0.96267 1.01417 1.21575 1.01276 0.93592 0.97416 1.21392 1.01443 0.95168 0.94642 1.21615 1.01167 0.94567 0.96245 1.21129 0.99669 0.95562 0.95081 1.21833 1.01285 1.00244 0.96636 1.22087 1.02071 0.97382 0.99415 1.19783 0.86231 0.83582 0.84066 1.90540 1.18443 1.56779 1.79686 1.43350 1.02830 1.54592 1.14852 1.19043 0.97617 1.35754 0.92696 0.87091 1.24994 0.96807 0.97016 0.94359 1.69978 1.36431 1.38657 1.03156 0.87338 0.83476 0.80924 0.80429 1.19673 1.19336 1.21836 1.21533 0.86182 0.93056 1.04527 1.23601 1.03307 0.95963 0.99947 1.23213 1.00288 1.02484 0.93946 0.92485 0.93367 0.92209 0.91000 0.93098 0.92782 0.92877 0.91701 0.91538 0.89649 0.91972 0.90917 0.92102 0.92852 0.93175 0.93294 0.90639 0.94400 0.92112 0.91821 0.88588 0.88008 0.88859 0.89072 0.86975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.50 37.16 0.32 -1.30 16 2 C -0.10 -1.14 2.76 -90.62 -0.25 -1.39 16 3 C -0.15 -1.53 9.19 37.16 0.34 -1.19 16 4 C -0.10 -1.52 3.88 -26.73 -0.10 -1.62 16 5 C -0.10 -1.79 1.09 -91.77 -0.10 -1.89 16 6 C -0.10 -1.54 4.15 -26.73 -0.11 -1.65 16 7 C -0.10 -1.52 2.87 -90.62 -0.26 -1.78 16 8 C -0.14 -1.85 9.14 37.16 0.34 -1.51 16 9 C -0.15 -2.94 7.75 37.16 0.29 -2.65 16 10 C 0.47 10.65 3.64 -10.99 -0.04 10.61 16 11 O -0.57 -14.97 14.55 5.54 0.08 -14.89 16 12 N -0.44 -10.34 2.42 -107.73 -0.26 -10.60 16 13 C -0.33 -9.07 9.36 -14.93 -0.14 -9.21 16 14 H 0.11 3.52 7.57 -52.49 -0.40 3.12 16 15 C 0.08 2.03 4.53 -17.47 -0.08 1.95 16 16 N -0.85 -23.90 13.96 55.50 0.77 -23.13 16 17 Si 0.85 20.17 24.18 -169.99 -4.11 16.06 16 18 H -0.27 -5.90 6.06 56.52 0.34 -5.56 16 19 H -0.27 -6.40 7.00 56.52 0.40 -6.01 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 C 0.05 1.06 2.64 -67.93 -0.18 0.88 16 22 C -0.19 -3.04 7.50 -26.73 -0.20 -3.24 16 23 C -0.16 -3.05 7.88 -26.73 -0.21 -3.26 16 24 H 0.06 0.61 7.74 -51.93 -0.40 0.21 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.67 6.44 -51.93 -0.33 0.34 16 27 H 0.07 0.82 6.21 -51.93 -0.32 0.50 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 1.02 5.90 -51.93 -0.31 0.71 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.09 1.37 3.61 -51.93 -0.19 1.18 16 34 H 0.06 0.81 6.04 -51.93 -0.31 0.50 16 35 H 0.07 1.27 7.44 -51.93 -0.39 0.89 16 36 H 0.06 0.95 7.99 -51.93 -0.41 0.54 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.62 8.10 -51.93 -0.42 0.20 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.07 1.73 5.26 -51.93 -0.27 1.45 16 41 H 0.04 0.66 8.06 -51.93 -0.42 0.24 16 42 H 0.06 1.23 7.52 -51.93 -0.39 0.84 16 43 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.10 1.91 6.34 -51.93 -0.33 1.58 16 45 H 0.10 1.63 5.41 -51.93 -0.28 1.35 16 46 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.09 1.57 7.52 -51.93 -0.39 1.18 16 48 H 0.11 2.39 8.01 -51.93 -0.42 1.97 16 LS Contribution 348.76 15.07 5.26 5.26 Total: -1.00 -29.73 348.76 -7.22 -36.95 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -8.57 Total: 7.58 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -0.39 Total: -17.24 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.51 Total: -33.73 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: 0.08 Total: -14.89 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.11 Total: 16.06 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.73 -7.22 -36.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448786857.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.536 kcal (2) G-P(sol) polarization free energy of solvation -29.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds