Wall clock time and date at job start Tue Mar 31 2020 05:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48497 * 109.47160 * 270.00022 * 3 2 1 5 5 H 1.48506 * 109.47050 * 29.99895 * 3 2 1 6 6 H 1.48496 * 109.47174 * 149.99647 * 3 2 1 7 7 C 1.37875 * 119.99527 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00252 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99888 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47429 * 179.97438 * 9 7 2 11 11 N 1.46893 * 109.47381 * 179.97438 * 10 9 7 12 12 C 1.46904 * 111.00358 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.47109 * 205.00042 * 12 11 10 14 14 C 1.52996 * 109.46883 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47362 * 60.00070 * 14 13 12 16 16 O 1.42901 * 109.47118 * 59.99733 * 15 14 13 17 17 C 1.42901 * 114.00154 * 150.00284 * 16 15 14 18 18 C 1.55238 * 110.46638 * 264.81073 * 17 16 15 19 19 C 1.54894 * 102.58338 * 203.39157 * 18 17 16 20 20 C 1.54266 * 104.31305 * 37.93170 * 19 18 17 21 21 C 1.53869 * 106.60031 * 336.32486 * 20 19 18 22 22 C 1.53003 * 109.47065 * 299.99819 * 15 14 13 23 23 C 1.52995 * 109.47300 * 84.99558 * 12 11 10 24 24 H 0.97007 * 119.99737 * 0.02562 * 1 2 3 25 25 H 1.09008 * 109.46978 * 59.99557 * 9 7 2 26 26 H 1.09004 * 109.47037 * 300.00072 * 9 7 2 27 27 H 1.09000 * 109.47002 * 60.00026 * 10 9 7 28 28 H 1.09004 * 109.47213 * 300.00139 * 10 9 7 29 29 H 1.00899 * 111.00188 * 303.95745 * 11 10 9 30 30 H 1.09006 * 109.46603 * 325.00063 * 12 11 10 31 31 H 1.08998 * 109.46832 * 59.99848 * 13 12 11 32 32 H 1.08994 * 109.47291 * 299.99891 * 13 12 11 33 33 H 1.09001 * 109.47385 * 299.99857 * 14 13 12 34 34 H 1.08994 * 109.47308 * 180.02562 * 14 13 12 35 35 H 1.08999 * 109.47707 * 180.02562 * 15 14 13 36 36 H 1.09007 * 110.43106 * 27.46130 * 17 16 15 37 37 H 1.08996 * 110.89448 * 85.10721 * 18 17 16 38 38 H 1.08993 * 110.76342 * 321.62387 * 18 17 16 39 39 H 1.09002 * 110.48891 * 279.18596 * 19 18 17 40 40 H 1.08998 * 110.48494 * 156.67683 * 19 18 17 41 41 H 1.09001 * 110.03084 * 95.60669 * 20 19 18 42 42 H 1.08996 * 110.03108 * 216.98559 * 20 19 18 43 43 H 1.08999 * 110.04012 * 119.28327 * 21 20 19 44 44 H 1.09006 * 110.02998 * 240.67078 * 21 20 19 45 45 H 1.08997 * 109.47351 * 179.97438 * 22 15 14 46 46 H 1.08998 * 109.47703 * 299.99917 * 22 15 14 47 47 H 1.08994 * 109.47305 * 300.00725 * 23 12 11 48 48 H 1.09001 * 109.46887 * 60.00174 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6366 -0.0001 11 7 5.4904 -2.6367 -0.0001 12 6 6.0168 -4.0082 -0.0009 13 6 7.4201 -4.0161 0.6087 14 6 7.9681 -5.4446 0.6085 15 6 8.0334 -5.9656 -0.8285 16 8 8.8932 -5.1255 -1.6012 17 6 9.5633 -5.8023 -2.6665 18 6 10.9780 -6.2561 -2.2164 19 6 11.7357 -6.3825 -3.5614 20 6 11.2114 -5.2035 -4.4068 21 6 9.8302 -4.8345 -3.8378 22 6 6.6301 -5.9577 -1.4381 23 6 6.0821 -4.5287 -1.4381 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6809 0.8906 26 1 3.8752 -0.6797 -0.8895 27 1 3.6584 -3.1502 -0.8903 28 1 3.6577 -3.1507 0.8897 29 1 5.8520 -2.1105 -0.7814 30 1 5.3611 -4.6493 0.5883 31 1 7.3735 -3.6453 1.6327 32 1 8.0758 -3.3750 0.0197 33 1 7.3124 -6.0854 1.1979 34 1 8.9676 -5.4503 1.0432 35 1 8.4234 -6.9834 -0.8287 36 1 8.9760 -6.6565 -3.0036 37 1 10.9336 -7.2182 -1.7061 38 1 11.4418 -5.5016 -1.5811 39 1 11.5013 -7.3316 -4.0436 40 1 12.8103 -6.2909 -3.4039 41 1 11.8888 -4.3537 -4.3230 42 1 11.1179 -5.5046 -5.4502 43 1 9.8372 -3.8057 -3.4778 44 1 9.0656 -4.9562 -4.6052 45 1 6.6766 -6.3284 -2.4620 46 1 5.9742 -6.5985 -0.8488 47 1 5.0824 -4.5230 -1.8723 48 1 6.7378 -3.8875 -2.0272 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449231036.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:30 Heat of formation + Delta-G solvation = -84.553497 kcal Electronic energy + Delta-G solvation = -22631.046688 eV Core-core repulsion = 19490.971969 eV Total energy + Delta-G solvation = -3140.074719 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.83677 -38.17099 -36.14871 -34.21825 -32.56647 -30.74954 -30.29595 -29.02941 -28.00146 -27.18958 -23.86682 -22.66432 -21.50081 -20.96588 -20.61586 -20.44250 -19.53465 -16.87339 -16.69609 -16.35522 -15.69915 -15.26134 -14.66731 -14.41114 -14.25757 -13.99968 -13.76226 -13.52679 -13.31726 -12.99669 -12.58812 -12.46222 -12.26591 -12.21784 -12.04140 -11.68259 -11.49861 -11.42852 -11.37766 -11.08185 -10.95974 -10.94684 -10.80153 -10.59980 -10.35760 -10.31174 -9.98306 -9.81715 -9.58185 -9.41941 -9.18050 -8.49875 -7.77544 -6.00881 -3.98820 3.35432 3.42630 3.49636 3.50254 4.26953 4.30843 4.50116 4.55728 4.61958 4.73417 4.76777 4.91224 4.99942 5.13632 5.17982 5.19425 5.29698 5.30471 5.33922 5.35852 5.46420 5.52561 5.54826 5.58258 5.60118 5.72303 5.76670 5.83323 5.89367 5.90713 5.97897 6.00144 6.03120 6.18110 6.26055 6.31246 6.34286 6.52795 6.56968 6.84255 7.20289 7.24086 7.45075 7.71627 7.84039 8.00911 8.57480 9.03426 9.61910 11.12520 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.027219 B = 0.002981 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.462507 B = 9389.275749 C = 9814.953962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.066 3.934 3 Si 0.882 3.118 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.263 1.263 7 C -0.520 4.520 8 H 0.070 0.930 9 C -0.010 4.010 10 C 0.074 3.926 11 N -0.690 5.690 12 C 0.089 3.911 13 C -0.101 4.101 14 C -0.113 4.113 15 C 0.091 3.909 16 O -0.363 6.363 17 C 0.083 3.917 18 C -0.145 4.145 19 C -0.124 4.124 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.136 4.136 23 C -0.142 4.142 24 H 0.263 0.737 25 H 0.025 0.975 26 H 0.008 0.992 27 H 0.020 0.980 28 H 0.062 0.938 29 H 0.335 0.665 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.058 0.942 46 H 0.069 0.931 47 H 0.059 0.941 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.891 -15.350 -5.846 28.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.558 4.558 8 H 0.088 0.912 9 C -0.048 4.048 10 C -0.054 4.054 11 N -0.319 5.319 12 C -0.022 4.022 13 C -0.139 4.139 14 C -0.151 4.151 15 C 0.034 3.966 16 O -0.282 6.282 17 C 0.025 3.975 18 C -0.183 4.183 19 C -0.162 4.162 20 C -0.160 4.160 21 C -0.161 4.161 22 C -0.174 4.174 23 C -0.181 4.181 24 H 0.072 0.928 25 H 0.043 0.957 26 H 0.026 0.974 27 H 0.038 0.962 28 H 0.081 0.919 29 H 0.152 0.848 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.088 0.912 47 H 0.078 0.922 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 23.783 -14.943 -5.109 28.549 hybrid contribution -0.006 0.277 -1.109 1.143 sum 23.777 -14.666 -6.217 28.620 Atomic orbital electron populations 1.69923 1.06328 1.26868 1.51320 1.25014 0.94735 0.99231 0.94521 0.86742 0.80526 0.83399 0.78445 1.20425 1.21475 1.18708 1.21088 0.89473 0.94461 1.50805 0.91178 1.19552 0.96569 0.92042 0.96657 1.21956 0.84402 0.99796 0.99236 1.60696 1.09604 1.12057 1.49548 1.21551 0.95868 0.90467 0.94294 1.21393 0.95758 0.95388 1.01387 1.21627 1.01444 0.98043 0.94028 1.22119 0.89716 0.93105 0.91703 1.87999 1.60041 1.36008 1.44155 1.23063 0.92103 0.94626 0.87712 1.23042 0.96270 1.01472 0.97543 1.22273 0.99830 0.98479 0.95601 1.22080 0.96330 0.98390 0.99232 1.22184 0.96935 1.00642 0.96381 1.21986 0.96538 0.98128 1.00768 1.22164 1.00755 0.96247 0.98938 0.92780 0.95708 0.97362 0.96161 0.91938 0.84764 0.91164 0.91599 0.91322 0.90941 0.91533 0.92725 0.91876 0.91725 0.90448 0.91692 0.91508 0.91563 0.91740 0.90379 0.91440 0.92360 0.91220 0.92215 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.45 13.96 55.43 0.77 -27.68 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 22.34 27.47 -169.99 -4.67 17.67 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.52 -15.21 9.66 -34.44 -0.33 -15.55 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C -0.01 -0.26 4.30 -27.88 -0.12 -0.38 16 10 C 0.07 1.55 5.42 -3.83 -0.02 1.53 16 11 N -0.69 -12.11 6.25 -106.73 -0.67 -12.78 16 12 C 0.09 1.28 2.47 -67.71 -0.17 1.11 16 13 C -0.10 -1.29 5.38 -26.73 -0.14 -1.43 16 14 C -0.11 -1.17 5.66 -26.74 -0.15 -1.32 16 15 C 0.09 0.91 2.75 -26.73 -0.07 0.84 16 16 O -0.36 -3.99 8.35 -35.23 -0.29 -4.28 16 17 C 0.08 0.75 3.15 -24.88 -0.08 0.67 16 18 C -0.15 -1.13 6.65 -24.55 -0.16 -1.29 16 19 C -0.12 -0.82 6.82 -25.07 -0.17 -0.99 16 20 C -0.12 -0.86 6.80 -25.62 -0.17 -1.03 16 21 C -0.12 -1.06 6.56 -25.62 -0.17 -1.23 16 22 C -0.14 -1.46 5.63 -26.70 -0.15 -1.61 16 23 C -0.14 -1.87 5.03 -26.71 -0.13 -2.00 16 24 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 25 H 0.02 0.63 7.20 -51.92 -0.37 0.26 16 26 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 27 H 0.02 0.42 7.43 -51.93 -0.39 0.04 16 28 H 0.06 1.33 8.06 -51.93 -0.42 0.91 16 29 H 0.33 5.71 8.47 -39.29 -0.33 5.37 16 30 H 0.07 1.05 7.80 -51.93 -0.41 0.64 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.94 7.68 -51.93 -0.40 0.54 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.47 7.79 -51.93 -0.40 0.07 16 36 H 0.06 0.54 7.75 -51.93 -0.40 0.13 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.86 7.45 -51.93 -0.39 0.47 16 48 H 0.07 0.95 7.67 -51.93 -0.40 0.56 16 LS Contribution 365.43 15.07 5.51 5.51 Total: -1.00 -30.89 365.43 -10.87 -41.76 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -9.38 Total: 0.60 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -2.15 Total: -20.80 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.11 Total: -40.45 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.29 Total: -4.28 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.67 Total: 17.67 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.89 -10.87 -41.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449231036.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.790 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds