Wall clock time and date at job start Tue Mar 31 2020 05:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47333 * 2 1 4 4 C 1.53004 * 109.47486 * 240.00052 * 2 1 3 5 5 C 1.50696 * 109.46970 * 59.99923 * 4 2 1 6 6 H 1.07998 * 120.00402 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99807 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00094 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00016 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46992 * 89.99727 * 9 7 5 11 11 H 1.48501 * 109.46945 * 209.99796 * 9 7 5 12 12 H 1.48500 * 109.47163 * 329.99951 * 9 7 5 13 13 C 1.53001 * 109.46958 * 120.00127 * 2 1 3 14 14 N 1.46901 * 109.46975 * 284.67004 * 13 2 1 15 15 C 1.48372 * 110.99870 * 59.62038 * 14 13 2 16 16 C 1.54248 * 104.83704 * 158.62493 * 15 14 13 17 17 C 1.53000 * 111.16851 * 216.27009 * 16 15 14 18 18 C 1.53006 * 109.47217 * 94.20618 * 16 15 14 19 19 C 1.53863 * 105.23302 * 335.67677 * 16 15 14 20 20 H 1.09003 * 112.83212 * 237.90266 * 19 16 15 21 21 C 1.54694 * 109.85894 * 110.93373 * 19 16 15 22 22 O 1.44334 * 103.64825 * 212.03205 * 21 19 16 23 23 C 1.43675 * 106.98382 * 40.12831 * 22 21 19 24 24 C 1.48447 * 111.00012 * 175.83338 * 14 13 2 25 25 H 1.08995 * 112.83248 * 325.85518 * 24 14 13 26 26 H 1.09000 * 109.47604 * 311.65362 * 1 2 3 27 27 H 1.09007 * 109.47186 * 71.64760 * 1 2 3 28 28 H 1.09002 * 109.47439 * 191.65094 * 1 2 3 29 29 H 1.08996 * 109.47071 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47010 * 299.99677 * 3 2 1 31 31 H 1.08999 * 109.46913 * 59.99864 * 3 2 1 32 32 H 1.08996 * 109.47164 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.46517 * 300.00349 * 4 2 1 34 34 H 0.96996 * 119.99949 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47125 * 164.67597 * 13 2 1 36 36 H 1.08993 * 109.47619 * 44.67056 * 13 2 1 37 37 H 1.08997 * 110.41371 * 278.02454 * 15 14 13 38 38 H 1.08996 * 110.41530 * 40.48380 * 15 14 13 39 39 H 1.09008 * 109.47036 * 176.34097 * 17 16 15 40 40 H 1.08995 * 109.47106 * 296.33229 * 17 16 15 41 41 H 1.08997 * 109.47261 * 56.33934 * 17 16 15 42 42 H 1.08999 * 109.46699 * 312.35044 * 18 16 15 43 43 H 1.09001 * 109.47242 * 72.35053 * 18 16 15 44 44 H 1.09000 * 109.46816 * 192.34902 * 18 16 15 45 45 H 1.09000 * 110.58425 * 330.57456 * 21 19 16 46 46 H 1.08996 * 110.58291 * 93.33542 * 21 19 16 47 47 H 1.09003 * 109.85679 * 213.64543 * 23 22 21 48 48 H 1.09003 * 109.85546 * 92.59217 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3807 7 6 1.8704 -0.4822 -3.7319 8 7 2.6266 -1.5514 -3.8526 9 14 1.2484 0.3988 -5.2572 10 1 2.2273 1.4398 -5.6614 11 1 1.0827 -0.5803 -6.3614 12 1 -0.0593 1.0373 -4.9614 13 6 2.0399 -0.7213 1.2492 14 7 1.8724 0.1498 2.4202 15 6 0.4459 0.5074 2.6172 16 6 0.3430 0.9187 4.1002 17 6 -0.9891 0.4723 4.7062 18 6 0.4978 2.4362 4.2206 19 6 1.5133 0.2057 4.7997 20 1 1.1875 -0.4473 5.6095 21 6 2.5676 1.2441 5.2502 22 8 3.8168 0.5286 5.1453 23 6 3.7510 -0.2568 3.9441 24 6 2.2642 -0.5540 3.6672 25 1 2.0326 -1.6188 3.6425 26 1 -0.3634 0.6830 0.7678 27 1 -0.3634 0.3236 -0.9754 28 1 -0.3634 -1.0065 0.2075 29 1 3.1299 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 -0.7216 -1.2490 33 1 1.6766 -1.7489 -1.2492 34 1 2.8609 -1.8828 -4.7335 35 1 3.0954 -0.9626 1.1240 36 1 1.4720 -1.6400 1.3957 37 1 0.1681 1.3356 1.9653 38 1 -0.1920 -0.3562 2.4293 39 1 -1.0059 0.7184 5.7680 40 1 -1.8079 0.9850 4.2015 41 1 -1.1025 -0.6046 4.5810 42 1 1.3596 2.7608 3.6375 43 1 -0.4009 2.9242 3.8433 44 1 0.6449 2.7045 5.2667 45 1 2.5635 2.1077 4.5851 46 1 2.3855 1.5534 6.2793 47 1 4.2957 -1.1908 4.0821 48 1 4.1779 0.3029 3.1119 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449783646.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:18 Heat of formation + Delta-G solvation = -38.515592 kcal Electronic energy + Delta-G solvation = -24330.458685 eV Core-core repulsion = 21192.380319 eV Total energy + Delta-G solvation = -3138.078366 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.94896 -37.78882 -36.29405 -33.83563 -32.19637 -29.95708 -28.61884 -27.46749 -27.20601 -26.83018 -26.23258 -23.83180 -22.56231 -22.32888 -20.36382 -18.95308 -18.01090 -16.58133 -16.22495 -16.14663 -15.02258 -14.76408 -14.50274 -14.39897 -14.22617 -13.74160 -13.60605 -13.28453 -13.08120 -12.74307 -12.49366 -12.23902 -12.04661 -11.91052 -11.65285 -11.62900 -11.37548 -11.05085 -10.91682 -10.82498 -10.73895 -10.64249 -10.62661 -10.52089 -10.32302 -10.09981 -9.84188 -9.67395 -9.50546 -8.95566 -8.81495 -8.31827 -8.23899 -5.96488 -3.96525 3.33000 3.39647 3.41976 3.94389 4.10494 4.26627 4.48820 4.53953 4.75385 4.99221 5.09043 5.12573 5.23880 5.32371 5.39398 5.47486 5.49616 5.53804 5.60749 5.68345 5.71727 5.75475 5.76701 5.83032 5.90672 5.92365 5.97858 6.03143 6.12127 6.19951 6.24679 6.27862 6.36283 6.50364 6.62006 6.72715 6.84801 6.87204 7.08734 7.22371 7.23400 7.31057 7.41803 7.70162 7.85446 8.03594 8.47816 9.08617 9.66182 11.15191 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.027020 B = 0.004404 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.004445 B = 6356.788406 C = 6818.475836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.056 4.056 3 C -0.114 4.114 4 C 0.035 3.965 5 C -0.506 4.506 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.054 3.946 14 N -0.494 5.494 15 C 0.040 3.960 16 C -0.067 4.067 17 C -0.137 4.137 18 C -0.140 4.140 19 C -0.116 4.116 20 H 0.090 0.910 21 C 0.052 3.948 22 O -0.384 6.384 23 C 0.062 3.938 24 C 0.026 3.974 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.035 0.965 29 H 0.041 0.959 30 H 0.052 0.948 31 H 0.042 0.958 32 H 0.015 0.985 33 H 0.012 0.988 34 H 0.259 0.741 35 H 0.072 0.928 36 H 0.029 0.971 37 H 0.099 0.901 38 H 0.046 0.954 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.069 0.931 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.077 0.923 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.356 4.408 18.522 19.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.056 4.056 3 C -0.172 4.172 4 C -0.002 4.002 5 C -0.545 4.545 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.715 3.285 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 C -0.074 4.074 14 N -0.218 5.218 15 C -0.087 4.087 16 C -0.068 4.068 17 C -0.195 4.195 18 C -0.197 4.197 19 C -0.135 4.135 20 H 0.109 0.891 21 C -0.024 4.024 22 O -0.303 6.303 23 C -0.015 4.015 24 C -0.083 4.083 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.034 0.966 33 H 0.030 0.970 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.047 0.953 37 H 0.117 0.883 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.097 0.903 46 H 0.101 0.899 47 H 0.095 0.905 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.758 4.765 18.422 19.396 hybrid contribution -0.955 -0.631 -1.098 1.586 sum -4.713 4.134 17.324 18.423 Atomic orbital electron populations 1.22372 0.96203 0.99887 1.02272 1.20585 0.94594 0.96202 0.94216 1.21604 1.00075 0.95584 0.99888 1.19108 0.96059 0.94959 0.90100 1.21222 1.30797 1.11834 0.90605 0.92314 1.25008 0.95421 0.95084 0.99026 1.69964 1.37296 1.23181 1.23282 0.86676 0.79219 0.79443 0.83145 1.20765 1.21398 1.19971 1.22535 1.01097 0.93418 0.90304 1.65465 1.17465 1.37707 1.01116 1.23685 0.89970 1.00951 0.94143 1.21255 0.94129 0.95956 0.95426 1.21856 0.96162 1.01064 1.00395 1.22011 1.02245 0.94044 1.01404 1.23411 0.95638 0.97189 0.97280 0.89142 1.23816 0.82212 0.95091 1.01284 1.88794 1.36957 1.61371 1.43188 1.23114 0.95029 0.95432 0.87953 1.24030 0.95738 0.97203 0.91299 0.90958 0.93131 0.91488 0.94539 0.93986 0.92858 0.93893 0.96649 0.97009 0.93168 0.90980 0.95322 0.88320 0.93582 0.92581 0.92323 0.92754 0.91171 0.92659 0.92795 0.90286 0.89948 0.90523 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 7.14 37.15 0.27 -2.48 16 2 C -0.06 -1.08 0.52 -154.51 -0.08 -1.16 16 3 C -0.11 -2.16 7.77 37.16 0.29 -1.87 16 4 C 0.04 0.88 3.98 -27.88 -0.11 0.77 16 5 C -0.51 -13.74 7.49 -34.44 -0.26 -14.00 16 6 H 0.06 1.55 5.75 -52.49 -0.30 1.25 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 9 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 13 C 0.05 0.91 4.23 -3.82 -0.02 0.90 16 14 N -0.49 -6.98 3.73 -220.97 -0.82 -7.80 16 15 C 0.04 0.51 3.14 -2.36 -0.01 0.50 16 16 C -0.07 -0.69 1.01 -153.40 -0.16 -0.85 16 17 C -0.14 -1.22 8.35 37.16 0.31 -0.91 16 18 C -0.14 -1.33 7.04 37.16 0.26 -1.07 16 19 C -0.12 -1.26 3.70 -87.85 -0.32 -1.58 16 20 H 0.09 0.91 7.84 -51.93 -0.41 0.50 16 21 C 0.05 0.58 5.87 38.05 0.22 0.81 16 22 O -0.38 -5.26 11.52 -35.23 -0.41 -5.67 16 23 C 0.06 0.81 7.43 37.74 0.28 1.09 16 24 C 0.03 0.33 3.36 -64.84 -0.22 0.12 16 25 H 0.07 0.91 7.95 -51.93 -0.41 0.50 16 26 H 0.05 0.79 4.18 -51.93 -0.22 0.57 16 27 H 0.07 1.37 6.32 -51.93 -0.33 1.04 16 28 H 0.04 0.65 7.90 -51.93 -0.41 0.24 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.05 1.08 6.62 -51.93 -0.34 0.74 16 31 H 0.04 0.71 5.80 -51.93 -0.30 0.41 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.07 1.28 8.05 -51.93 -0.42 0.86 16 36 H 0.03 0.49 7.78 -51.93 -0.40 0.08 16 37 H 0.10 1.35 4.47 -51.93 -0.23 1.11 16 38 H 0.05 0.62 6.82 -51.93 -0.35 0.27 16 39 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.50 8.12 -51.93 -0.42 0.08 16 42 H 0.07 0.76 6.63 -51.93 -0.34 0.41 16 43 H 0.05 0.50 8.13 -51.93 -0.42 0.07 16 44 H 0.05 0.44 7.33 -51.93 -0.38 0.06 16 45 H 0.08 0.91 5.30 -51.93 -0.28 0.63 16 46 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.07 1.07 7.86 -51.93 -0.41 0.66 16 LS Contribution 344.05 15.07 5.18 5.18 Total: -1.00 -29.03 344.05 -8.45 -37.48 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -8.48 Total: -1.37 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: 0.36 Total: -18.29 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: -0.09 Total: -33.85 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -0.41 Total: -5.67 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.03 -8.45 -37.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449783646.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.040 kcal (2) G-P(sol) polarization free energy of solvation -29.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds