Wall clock time and date at job start Tue Mar 31 2020 06:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47251 * 2 1 4 4 C 1.53006 * 109.46842 * 119.99983 * 2 1 3 5 5 C 1.53002 * 109.46886 * 175.00238 * 4 2 1 6 6 C 1.52996 * 109.46891 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.46947 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.47238 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99507 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00020 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99544 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47598 * 90.00303 * 11 10 8 13 13 H 1.08005 * 119.99628 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00538 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99774 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00058 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47013 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46808 * 120.00120 * 16 14 12 19 19 H 1.48501 * 109.46891 * 240.00253 * 16 14 12 20 20 C 1.46495 * 119.99828 * 0.02562 * 10 8 7 21 21 C 1.53004 * 109.46986 * 90.00387 * 20 10 8 22 22 C 1.52997 * 117.49514 * 243.61460 * 21 20 10 23 23 C 1.52997 * 60.00268 * 252.51458 * 22 21 20 24 24 H 1.08997 * 109.47394 * 299.99886 * 1 2 3 25 25 H 1.09002 * 109.47069 * 60.00212 * 1 2 3 26 26 H 1.09004 * 109.47644 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47018 * 239.99799 * 2 1 3 28 28 H 1.08992 * 109.47188 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46911 * 299.99885 * 3 2 1 30 30 H 1.09005 * 109.46713 * 59.99500 * 3 2 1 31 31 H 1.08998 * 109.46879 * 54.99647 * 4 2 1 32 32 H 1.09001 * 109.46611 * 294.99935 * 4 2 1 33 33 H 1.08992 * 109.47056 * 59.99650 * 5 4 2 34 34 H 1.08996 * 109.46698 * 299.99766 * 5 4 2 35 35 H 1.09001 * 109.47372 * 59.99964 * 6 5 4 36 36 H 1.09004 * 109.47108 * 299.99708 * 6 5 4 37 37 H 1.09001 * 109.46832 * 59.99979 * 7 6 5 38 38 H 1.09000 * 109.47611 * 300.00276 * 7 6 5 39 39 H 1.09008 * 109.47096 * 209.99661 * 11 10 8 40 40 H 1.09003 * 109.47776 * 329.99537 * 11 10 8 41 41 H 0.97002 * 119.99965 * 179.97438 * 15 14 12 42 42 H 1.09004 * 109.46971 * 209.99938 * 20 10 8 43 43 H 1.08993 * 109.47768 * 330.00002 * 20 10 8 44 44 H 1.09000 * 115.55217 * 29.32861 * 21 20 10 45 45 H 1.09003 * 117.50408 * 0.02562 * 22 21 20 46 46 H 1.09009 * 117.49806 * 145.01909 * 22 21 20 47 47 H 1.09001 * 117.49351 * 252.51715 * 23 22 21 48 48 H 1.08988 * 117.50123 * 107.49613 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5648 -0.8310 1.1881 6 6 4.0748 -1.5517 2.4376 7 6 5.5995 -1.6620 2.3761 8 6 6.1020 -2.3714 3.6072 9 8 5.3176 -2.7516 4.4504 10 7 7.4229 -2.5831 3.7710 11 6 7.9111 -3.2731 4.9675 12 6 7.9621 -4.7564 4.7065 13 1 7.6605 -5.1463 3.7454 14 6 8.3937 -5.6160 5.6943 15 7 8.7605 -5.1413 6.8647 16 14 8.4562 -7.4547 5.3709 17 1 7.9942 -7.7297 3.9866 18 1 9.8508 -7.9385 5.5321 19 1 7.5736 -8.1574 6.3366 20 6 8.3702 -2.1232 2.7526 21 6 8.8184 -0.6974 3.0798 22 6 8.4546 0.4039 2.0821 23 6 9.9025 -0.0773 2.1959 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1299 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6052 -1.7198 1.2952 32 1 1.7515 -0.1583 2.1370 33 1 3.9993 0.1675 1.1421 34 1 3.8531 -1.3940 0.3004 35 1 3.6402 -2.5503 2.4840 36 1 3.7864 -0.9883 3.3251 37 1 6.0344 -0.6636 2.3295 38 1 5.8876 -2.2255 1.4886 39 1 8.9104 -2.9129 5.2124 40 1 7.2386 -3.0739 5.8019 41 1 9.0638 -5.7461 7.5599 42 1 9.2379 -2.7828 2.7393 43 1 7.8882 -2.1373 1.7751 44 1 8.8222 -0.4370 4.1383 45 1 7.8956 0.1128 1.1927 46 1 8.2186 1.3893 2.4840 47 1 10.6190 0.5914 2.6728 48 1 10.2963 -0.6850 1.3814 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457538963.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:55 Heat of formation + Delta-G solvation = -53.419797 kcal Electronic energy + Delta-G solvation = -22395.369609 eV Core-core repulsion = 19256.644949 eV Total energy + Delta-G solvation = -3138.724660 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.22919 -37.39416 -37.04866 -34.47965 -33.71648 -32.47892 -29.57569 -27.70565 -27.35839 -26.13973 -24.53515 -22.52176 -22.28446 -20.89322 -20.61376 -20.07438 -18.22051 -16.46128 -16.44527 -15.85493 -15.36297 -15.09924 -14.73220 -14.42388 -14.36770 -14.13315 -13.80340 -13.31599 -12.84036 -12.56798 -12.42134 -12.32513 -12.19906 -11.95487 -11.76989 -11.48371 -11.42519 -11.37773 -11.19803 -11.06313 -10.85359 -10.73039 -10.68095 -10.61823 -10.42602 -10.33087 -10.29159 -10.05610 -9.78148 -9.56325 -8.77103 -8.41026 -7.61162 -6.01567 -4.05919 3.31217 3.38518 3.42269 3.53413 3.83835 4.06867 4.46881 4.60746 4.73520 4.78116 4.90356 5.03858 5.05796 5.12464 5.23172 5.29812 5.32680 5.42091 5.47967 5.51243 5.53768 5.58123 5.64304 5.69446 5.73195 5.74949 5.84615 5.88609 5.92957 5.96170 6.01591 6.04231 6.10210 6.13412 6.19081 6.20550 6.27036 6.46495 6.49701 6.59248 7.12729 7.49333 7.61072 7.95640 8.27589 8.50200 8.94680 9.18701 9.59289 11.06557 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014884 B = 0.003815 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.816305 B = 7338.539643 C = 8773.462589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 C -0.149 4.149 4 C -0.116 4.116 5 C -0.119 4.119 6 C -0.103 4.103 7 C -0.141 4.141 8 C 0.505 3.495 9 O -0.544 6.544 10 N -0.597 5.597 11 C 0.245 3.755 12 C -0.524 4.524 13 H 0.057 0.943 14 C 0.060 3.940 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.144 3.856 21 C -0.164 4.164 22 C -0.185 4.185 23 C -0.177 4.177 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.031 0.969 40 H 0.042 0.958 41 H 0.262 0.738 42 H 0.085 0.915 43 H 0.067 0.933 44 H 0.107 0.893 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.091 0.909 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.944 13.267 -14.986 21.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.206 4.206 4 C -0.153 4.153 5 C -0.157 4.157 6 C -0.141 4.141 7 C -0.181 4.181 8 C 0.292 3.708 9 O -0.421 6.421 10 N -0.328 5.328 11 C 0.126 3.874 12 C -0.563 4.563 13 H 0.075 0.925 14 C -0.142 4.142 15 N -0.534 5.534 16 Si 0.725 3.275 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.209 1.209 20 C 0.019 3.981 21 C -0.183 4.183 22 C -0.222 4.222 23 C -0.215 4.215 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.049 0.951 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.103 0.897 43 H 0.085 0.915 44 H 0.125 0.875 45 H 0.111 0.889 46 H 0.108 0.892 47 H 0.109 0.891 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.285 12.987 -14.335 20.669 hybrid contribution 0.274 -1.003 -0.096 1.044 sum -7.011 11.984 -14.431 20.025 Atomic orbital electron populations 1.21849 0.95551 1.01636 1.01491 1.21139 0.95442 0.96406 0.98690 1.21894 1.01338 0.96000 1.01380 1.21658 0.95738 1.00488 0.97435 1.21664 0.95271 1.00551 0.98194 1.21328 0.93622 1.01517 0.97657 1.21747 0.97361 1.01469 0.97513 1.20431 0.82599 0.79859 0.87873 1.90655 1.54834 1.51767 1.44875 1.48195 1.05102 1.56408 1.23127 1.19257 0.94879 0.91192 0.82056 1.21483 1.43604 0.91722 0.99453 0.92481 1.24938 0.95300 0.99026 0.94905 1.69945 1.44506 1.35051 1.03935 0.86456 0.77496 0.85206 0.78346 1.19822 1.21001 1.20893 1.20986 0.94090 0.91991 0.91042 1.22943 1.02952 0.94855 0.97581 1.23040 0.98478 0.99082 1.01602 1.22892 0.91779 1.03868 1.02928 0.92756 0.93014 0.92760 0.91408 0.92309 0.93163 0.92780 0.91941 0.91939 0.91948 0.92254 0.91415 0.91484 0.89537 0.89981 0.95104 0.93987 0.92830 0.89666 0.91459 0.87473 0.88891 0.89241 0.89054 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.19 37.16 0.34 -0.81 16 2 C -0.10 -0.83 2.92 -90.62 -0.26 -1.10 16 3 C -0.15 -1.18 8.95 37.16 0.33 -0.84 16 4 C -0.12 -1.14 4.68 -26.73 -0.13 -1.27 16 5 C -0.12 -1.26 4.97 -26.73 -0.13 -1.39 16 6 C -0.10 -1.45 4.50 -26.73 -0.12 -1.57 16 7 C -0.14 -2.10 4.25 -27.88 -0.12 -2.22 16 8 C 0.51 10.64 7.67 -10.98 -0.08 10.56 16 9 O -0.54 -13.94 15.56 5.56 0.09 -13.86 16 10 N -0.60 -12.73 2.46 -175.06 -0.43 -13.16 16 11 C 0.25 6.50 5.16 -5.20 -0.03 6.47 16 12 C -0.52 -15.04 9.39 -34.44 -0.32 -15.36 16 13 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 16 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 C 0.14 2.35 5.49 -4.04 -0.02 2.32 16 21 C -0.16 -2.30 5.95 -90.62 -0.54 -2.84 16 22 C -0.19 -2.04 9.18 -26.73 -0.25 -2.29 16 23 C -0.18 -1.99 10.25 -26.73 -0.27 -2.27 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.46 6.57 -51.93 -0.34 0.12 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.61 6.56 -51.93 -0.34 0.27 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 36 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 37 H 0.09 1.13 6.84 -51.93 -0.36 0.77 16 38 H 0.08 1.10 7.40 -51.93 -0.38 0.72 16 39 H 0.03 0.83 8.07 -51.92 -0.42 0.41 16 40 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 42 H 0.09 1.47 8.07 -51.93 -0.42 1.05 16 43 H 0.07 0.93 6.17 -51.93 -0.32 0.61 16 44 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 45 H 0.09 0.92 7.87 -51.93 -0.41 0.51 16 46 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 47 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 48 H 0.09 0.97 8.14 -51.94 -0.42 0.55 16 LS Contribution 383.33 15.07 5.78 5.78 Total: -1.00 -32.34 383.33 -9.81 -42.15 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -9.26 Total: -0.85 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -1.70 Total: -10.97 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.31 Total: -39.34 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.09 Total: -13.86 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.34 -9.81 -42.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457538963.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.269 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds