Wall clock time and date at job start Tue Mar 31 2020 06:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47251 * 2 1 4 4 C 1.53006 * 109.46842 * 119.99983 * 2 1 3 5 5 C 1.53002 * 109.46886 * 175.00238 * 4 2 1 6 6 C 1.52996 * 109.46891 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.46947 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.47238 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99507 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00020 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99544 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47598 * 90.00303 * 11 10 8 13 13 H 1.08005 * 119.99628 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00538 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99774 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00058 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47013 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46808 * 120.00120 * 16 14 12 19 19 H 1.48501 * 109.46891 * 240.00253 * 16 14 12 20 20 C 1.46495 * 119.99828 * 0.02562 * 10 8 7 21 21 C 1.53004 * 109.46986 * 90.00387 * 20 10 8 22 22 C 1.52997 * 117.49514 * 243.61460 * 21 20 10 23 23 C 1.52997 * 60.00268 * 252.51458 * 22 21 20 24 24 H 1.08997 * 109.47394 * 299.99886 * 1 2 3 25 25 H 1.09002 * 109.47069 * 60.00212 * 1 2 3 26 26 H 1.09004 * 109.47644 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47018 * 239.99799 * 2 1 3 28 28 H 1.08992 * 109.47188 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46911 * 299.99885 * 3 2 1 30 30 H 1.09005 * 109.46713 * 59.99500 * 3 2 1 31 31 H 1.08998 * 109.46879 * 54.99647 * 4 2 1 32 32 H 1.09001 * 109.46611 * 294.99935 * 4 2 1 33 33 H 1.08992 * 109.47056 * 59.99650 * 5 4 2 34 34 H 1.08996 * 109.46698 * 299.99766 * 5 4 2 35 35 H 1.09001 * 109.47372 * 59.99964 * 6 5 4 36 36 H 1.09004 * 109.47108 * 299.99708 * 6 5 4 37 37 H 1.09001 * 109.46832 * 59.99979 * 7 6 5 38 38 H 1.09000 * 109.47611 * 300.00276 * 7 6 5 39 39 H 1.09008 * 109.47096 * 209.99661 * 11 10 8 40 40 H 1.09003 * 109.47776 * 329.99537 * 11 10 8 41 41 H 0.97002 * 119.99965 * 179.97438 * 15 14 12 42 42 H 1.09004 * 109.46971 * 209.99938 * 20 10 8 43 43 H 1.08993 * 109.47768 * 330.00002 * 20 10 8 44 44 H 1.09000 * 115.55217 * 29.32861 * 21 20 10 45 45 H 1.09003 * 117.50408 * 0.02562 * 22 21 20 46 46 H 1.09009 * 117.49806 * 145.01909 * 22 21 20 47 47 H 1.09001 * 117.49351 * 252.51715 * 23 22 21 48 48 H 1.08988 * 117.50123 * 107.49613 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5648 -0.8310 1.1881 6 6 4.0748 -1.5517 2.4376 7 6 5.5995 -1.6620 2.3761 8 6 6.1020 -2.3714 3.6072 9 8 5.3176 -2.7516 4.4504 10 7 7.4229 -2.5831 3.7710 11 6 7.9111 -3.2731 4.9675 12 6 7.9621 -4.7564 4.7065 13 1 7.6605 -5.1463 3.7454 14 6 8.3937 -5.6160 5.6943 15 7 8.7605 -5.1413 6.8647 16 14 8.4562 -7.4547 5.3709 17 1 7.9942 -7.7297 3.9866 18 1 9.8508 -7.9385 5.5321 19 1 7.5736 -8.1574 6.3366 20 6 8.3702 -2.1232 2.7526 21 6 8.8184 -0.6974 3.0798 22 6 8.4546 0.4039 2.0821 23 6 9.9025 -0.0773 2.1959 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1299 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6052 -1.7198 1.2952 32 1 1.7515 -0.1583 2.1370 33 1 3.9993 0.1675 1.1421 34 1 3.8531 -1.3940 0.3004 35 1 3.6402 -2.5503 2.4840 36 1 3.7864 -0.9883 3.3251 37 1 6.0344 -0.6636 2.3295 38 1 5.8876 -2.2255 1.4886 39 1 8.9104 -2.9129 5.2124 40 1 7.2386 -3.0739 5.8019 41 1 9.0638 -5.7461 7.5599 42 1 9.2379 -2.7828 2.7393 43 1 7.8882 -2.1373 1.7751 44 1 8.8222 -0.4370 4.1383 45 1 7.8956 0.1128 1.1927 46 1 8.2186 1.3893 2.4840 47 1 10.6190 0.5914 2.6728 48 1 10.2963 -0.6850 1.3814 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457538963.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:54 Heat of formation + Delta-G solvation = -70.246345 kcal Electronic energy + Delta-G solvation = -22396.099263 eV Core-core repulsion = 19256.644949 eV Total energy + Delta-G solvation = -3139.454314 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.83361 -38.40848 -38.02572 -36.17043 -34.87268 -34.52676 -30.85239 -29.40106 -27.95619 -27.60624 -25.97404 -24.19697 -23.16040 -22.00401 -21.77257 -20.78876 -19.77957 -18.62276 -17.93430 -17.15756 -16.95117 -16.29643 -16.01244 -15.86439 -15.41582 -15.01733 -14.80513 -14.59020 -14.33024 -14.09204 -13.70809 -13.50826 -13.38051 -13.07477 -12.98812 -12.91331 -12.58094 -12.55122 -12.50552 -12.29073 -12.25062 -12.22231 -12.08543 -11.71790 -11.62351 -11.41092 -11.29613 -11.23521 -11.17521 -10.85875 -10.66454 -10.45673 -9.42529 -8.23611 -6.38847 1.34757 1.37381 1.49393 1.88197 2.29419 2.45035 2.99529 3.05551 3.65581 3.86261 3.93853 4.00389 4.07006 4.10767 4.17646 4.20222 4.32313 4.34852 4.54155 4.60280 4.71810 4.76936 4.82239 4.84213 4.86908 4.87765 4.90264 4.97201 5.01567 5.04683 5.09836 5.11265 5.18746 5.22116 5.26161 5.34858 5.35833 5.37278 5.39020 5.46681 5.56527 5.61547 5.62379 5.86085 6.05665 6.69443 6.82993 7.27645 7.52530 8.83794 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014884 B = 0.003815 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.816305 B = 7338.539643 C = 8773.462589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.149 4.149 4 C -0.117 4.117 5 C -0.108 4.108 6 C -0.100 4.100 7 C -0.124 4.124 8 C 0.492 3.508 9 O -0.603 6.603 10 N -0.602 5.602 11 C 0.263 3.737 12 C -0.541 4.541 13 H 0.053 0.947 14 C 0.005 3.995 15 N -0.930 5.930 16 Si 0.970 3.030 17 H -0.266 1.266 18 H -0.268 1.268 19 H -0.282 1.282 20 C 0.143 3.857 21 C -0.195 4.195 22 C -0.162 4.162 23 C -0.163 4.163 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.043 0.957 36 H 0.047 0.953 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.018 0.982 40 H -0.007 1.007 41 H 0.267 0.733 42 H 0.070 0.930 43 H 0.103 0.897 44 H 0.076 0.924 45 H 0.116 0.884 46 H 0.099 0.901 47 H 0.098 0.902 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.652 14.034 -18.412 24.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.206 4.206 4 C -0.154 4.154 5 C -0.145 4.145 6 C -0.138 4.138 7 C -0.163 4.163 8 C 0.282 3.718 9 O -0.485 6.485 10 N -0.332 5.332 11 C 0.141 3.859 12 C -0.580 4.580 13 H 0.072 0.928 14 C -0.193 4.193 15 N -0.570 5.570 16 Si 0.794 3.206 17 H -0.190 1.190 18 H -0.193 1.193 19 H -0.207 1.207 20 C 0.021 3.979 21 C -0.215 4.215 22 C -0.199 4.199 23 C -0.200 4.200 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.036 0.964 40 H 0.011 0.989 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.121 0.879 44 H 0.095 0.905 45 H 0.134 0.866 46 H 0.117 0.883 47 H 0.116 0.884 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.966 13.787 -17.806 23.572 hybrid contribution 0.195 -1.196 1.024 1.587 sum -6.771 12.591 -16.782 22.045 Atomic orbital electron populations 1.21856 0.95271 1.01622 1.01862 1.21115 0.95726 0.96706 0.97838 1.21895 1.01565 0.95445 1.01675 1.21654 0.95499 1.00165 0.98108 1.21588 0.95463 1.01029 0.96441 1.21299 0.93082 1.00469 0.98963 1.21751 0.97650 1.02249 0.94663 1.21632 0.81810 0.79204 0.89156 1.90619 1.56222 1.54274 1.47374 1.48212 1.06471 1.55919 1.22569 1.18665 0.92892 0.91173 0.83171 1.21743 1.43871 0.92897 0.99491 0.92831 1.25903 0.94610 1.04299 0.94529 1.70069 1.45000 1.37017 1.04889 0.85335 0.78183 0.78703 0.78392 1.18983 1.19307 1.20748 1.21219 0.92785 0.92973 0.90966 1.22643 1.07256 0.94558 0.97009 1.23191 0.98223 0.97946 1.00502 1.23010 0.92058 1.03090 1.01862 0.93058 0.91988 0.93013 0.90848 0.91915 0.92239 0.93183 0.92867 0.92741 0.90239 0.90807 0.93788 0.93423 0.86665 0.87221 0.96409 0.98937 0.92418 0.91167 0.87939 0.90525 0.86557 0.88272 0.88381 0.87299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.19 71.98 0.66 -1.42 16 2 C -0.10 -1.40 2.92 -10.79 -0.03 -1.43 16 3 C -0.15 -1.94 8.95 71.98 0.64 -1.30 16 4 C -0.12 -2.15 4.68 30.60 0.14 -2.01 16 5 C -0.11 -2.00 4.97 30.59 0.15 -1.85 16 6 C -0.10 -2.74 4.50 30.59 0.14 -2.60 16 7 C -0.12 -3.46 4.25 29.85 0.13 -3.33 16 8 C 0.49 21.22 7.67 87.66 0.67 21.89 16 9 O -0.60 -32.74 15.56 -3.02 -0.05 -32.79 16 10 N -0.60 -26.43 2.46 -826.16 -2.03 -28.46 16 11 C 0.26 14.77 5.16 85.63 0.44 15.21 16 12 C -0.54 -32.18 9.39 25.60 0.24 -31.94 16 13 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 14 C 0.01 0.31 5.46 84.66 0.46 0.77 16 15 N -0.93 -57.74 13.29 21.45 0.28 -57.46 16 16 Si 0.97 45.87 29.54 68.60 2.03 47.90 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 20 C 0.14 4.56 5.49 86.38 0.47 5.03 16 21 C -0.20 -5.27 5.95 -10.79 -0.06 -5.33 16 22 C -0.16 -2.95 9.18 30.59 0.28 -2.67 16 23 C -0.16 -3.19 10.25 30.59 0.31 -2.87 16 24 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 0.77 6.57 -2.39 -0.02 0.75 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.24 6.56 -2.39 -0.02 1.22 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.04 1.40 8.10 -2.39 -0.02 1.38 16 36 H 0.05 1.47 8.10 -2.38 -0.02 1.45 16 37 H 0.12 2.59 6.84 -2.39 -0.02 2.57 16 38 H 0.11 2.52 7.40 -2.39 -0.02 2.51 16 39 H 0.02 1.03 8.07 -2.38 -0.02 1.01 16 40 H -0.01 -0.49 7.42 -2.39 -0.02 -0.51 16 41 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 42 H 0.07 2.41 8.07 -2.38 -0.02 2.39 16 43 H 0.10 2.50 6.17 -2.39 -0.01 2.48 16 44 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 45 H 0.12 1.62 7.87 -2.39 -0.02 1.60 16 46 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 47 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -75.39 383.33 5.77 -69.61 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.88 Total: 15.04 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: 4.66 Total: -13.85 kcal Atomic # 7 Polarization: -84.18 SS G_CDS: -1.74 Total: -85.92 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: -0.05 Total: -32.79 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -75.39 5.77 -69.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457538963.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.633 kcal (2) G-P(sol) polarization free energy of solvation -75.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds