Wall clock time and date at job start Tue Mar 31 2020 06:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47185 * 2 1 4 4 C 1.53003 * 109.46777 * 119.99383 * 2 1 3 5 5 C 1.53005 * 109.46786 * 64.99854 * 4 2 1 6 6 C 1.53002 * 109.46815 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.47103 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47460 * 180.02562 * 7 6 5 9 9 O 1.21296 * 119.99694 * 353.54512 * 8 7 6 10 10 N 1.34772 * 120.00340 * 173.53959 * 8 7 6 11 11 C 1.37102 * 120.00005 * 356.29413 * 10 8 7 12 12 H 1.08000 * 120.00072 * 232.08492 * 11 10 8 13 13 C 1.38947 * 119.99891 * 52.08117 * 11 10 8 14 14 N 1.31420 * 119.99839 * 26.91774 * 13 11 10 15 15 Si 1.86793 * 120.00235 * 206.91470 * 13 11 10 16 16 H 1.48508 * 109.47229 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47140 * 119.99915 * 15 13 11 18 18 H 1.48497 * 109.47634 * 240.00351 * 15 13 11 19 19 C 1.46500 * 120.00070 * 176.02010 * 10 8 7 20 20 C 1.54268 * 110.03187 * 237.90779 * 19 10 8 21 21 C 1.54967 * 104.15974 * 217.13991 * 20 19 10 22 22 C 1.54891 * 102.78110 * 37.88373 * 21 20 19 23 23 C 1.53880 * 110.03411 * 120.69101 * 19 10 8 24 24 H 1.08995 * 109.47511 * 300.00967 * 1 2 3 25 25 H 1.09008 * 109.47007 * 60.00513 * 1 2 3 26 26 H 1.09003 * 109.47222 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47511 * 239.99033 * 2 1 3 28 28 H 1.09002 * 109.47169 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47179 * 299.99632 * 3 2 1 30 30 H 1.08995 * 109.47686 * 59.99139 * 3 2 1 31 31 H 1.09005 * 109.47306 * 305.00368 * 4 2 1 32 32 H 1.08993 * 109.47112 * 184.99787 * 4 2 1 33 33 H 1.09005 * 109.47211 * 60.00508 * 5 4 2 34 34 H 1.08993 * 109.47240 * 299.99854 * 5 4 2 35 35 H 1.09005 * 109.46969 * 60.00702 * 6 5 4 36 36 H 1.09000 * 109.47580 * 300.00516 * 6 5 4 37 37 H 1.09005 * 109.46674 * 60.00473 * 7 6 5 38 38 H 1.09000 * 109.47285 * 300.00649 * 7 6 5 39 39 H 0.97000 * 119.99590 * 184.88523 * 14 13 11 40 40 H 1.08998 * 110.02007 * 359.30187 * 19 10 8 41 41 H 1.09001 * 110.48296 * 335.78134 * 20 19 10 42 42 H 1.08998 * 110.48500 * 98.42648 * 20 19 10 43 43 H 1.09002 * 110.71759 * 279.57012 * 21 20 19 44 44 H 1.09003 * 110.92657 * 156.29615 * 21 20 19 45 45 H 1.08998 * 110.49020 * 203.40729 * 22 21 20 46 46 H 1.09001 * 110.59665 * 80.82105 * 22 21 20 47 47 H 1.09000 * 110.03267 * 238.57436 * 23 19 10 48 48 H 1.09007 * 110.03029 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6350 -2.1954 1.1882 6 6 2.1455 -2.9167 2.4372 7 6 1.7412 -4.3910 2.3758 8 6 2.2434 -5.1014 3.6063 9 8 2.9620 -4.5197 4.3915 10 7 1.8941 -6.3829 3.8344 11 6 1.0213 -7.0166 2.9880 12 1 0.1499 -7.5157 3.3854 13 6 1.2579 -7.0166 1.6188 14 7 2.4865 -6.9107 1.1643 15 14 -0.1701 -7.1671 0.4241 16 1 -1.4420 -7.2716 1.1836 17 1 -0.2131 -5.9672 -0.4497 18 1 0.0092 -8.3817 -0.4112 19 6 2.4515 -7.1007 4.9834 20 6 3.1928 -8.3668 4.5066 21 6 2.8824 -9.4216 5.5986 22 6 1.4082 -9.1152 5.9619 23 6 1.3176 -7.5761 5.9087 24 1 -0.3634 0.5139 0.8898 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8898 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8898 31 1 1.6052 -0.2616 2.1371 32 1 3.1262 -0.6443 1.2953 33 1 2.0698 -2.6550 0.3005 34 1 0.5488 -2.2722 1.1422 35 1 1.7111 -2.4572 3.3251 36 1 3.2318 -2.8398 2.4828 37 1 2.1760 -4.8502 1.4879 38 1 0.6549 -4.4683 2.3299 39 1 2.6461 -6.8393 0.2102 40 1 3.1345 -6.4527 5.5326 41 1 2.8075 -8.6933 3.5407 42 1 4.2653 -8.1815 4.4479 43 1 3.5304 -9.2829 6.4641 44 1 2.9806 -10.4324 5.2026 45 1 1.1793 -9.4763 6.9645 46 1 0.7326 -9.5626 5.2329 47 1 1.4508 -7.1594 6.9070 48 1 0.3525 -7.2723 5.5030 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457591196.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:06 Heat of formation + Delta-G solvation = -80.829907 kcal Electronic energy + Delta-G solvation = -23194.571169 eV Core-core repulsion = 20054.657917 eV Total energy + Delta-G solvation = -3139.913252 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -38.93846 -37.18145 -36.53252 -34.08592 -33.28458 -31.38934 -28.87867 -27.91332 -27.16356 -26.92093 -24.81691 -23.74925 -20.84775 -19.96459 -19.88619 -19.27360 -19.10638 -16.38604 -15.70044 -15.48798 -15.11858 -14.68827 -14.48594 -14.27951 -14.05010 -13.65171 -13.45221 -13.02577 -12.60318 -12.45424 -12.24180 -12.07188 -11.88323 -11.59425 -11.49666 -11.23556 -11.20204 -10.88594 -10.78487 -10.71168 -10.56505 -10.45882 -10.38355 -10.33794 -10.30594 -10.22834 -10.01881 -9.95036 -9.81425 -9.60721 -8.67042 -8.19013 -7.27637 -6.38934 -4.16888 3.10720 3.23047 3.26016 4.09154 4.21538 4.76707 4.85209 4.95043 5.00711 5.03056 5.40265 5.41086 5.48409 5.56637 5.60095 5.68068 5.73506 5.79523 5.84917 5.92676 6.06456 6.11644 6.16332 6.21324 6.23273 6.25440 6.34035 6.34928 6.38583 6.45255 6.46856 6.54331 6.57675 6.61035 6.61616 6.72581 6.77231 6.87361 6.97896 7.10225 7.17254 7.29322 7.36869 7.48052 8.05561 8.68678 8.95747 9.67408 10.10608 10.61841 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019414 B = 0.004495 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.941765 B = 6227.975736 C = 7132.651777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.099 4.099 3 C -0.146 4.146 4 C -0.113 4.113 5 C -0.120 4.120 6 C -0.101 4.101 7 C -0.128 4.128 8 C 0.510 3.490 9 O -0.616 6.616 10 N -0.449 5.449 11 C -0.334 4.334 12 H 0.081 0.919 13 C 0.056 3.944 14 N -0.845 5.845 15 Si 0.890 3.110 16 H -0.266 1.266 17 H -0.275 1.275 18 H -0.282 1.282 19 C 0.131 3.869 20 C -0.120 4.120 21 C -0.123 4.123 22 C -0.116 4.116 23 C -0.127 4.127 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.107 0.893 38 H 0.074 0.926 39 H 0.268 0.732 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.049 0.951 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.064 0.936 47 H 0.051 0.949 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.925 5.457 -0.857 6.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 C -0.204 4.204 4 C -0.151 4.151 5 C -0.157 4.157 6 C -0.139 4.139 7 C -0.168 4.168 8 C 0.301 3.699 9 O -0.503 6.503 10 N -0.168 5.168 11 C -0.462 4.462 12 H 0.099 0.901 13 C -0.151 4.151 14 N -0.480 5.480 15 Si 0.715 3.285 16 H -0.190 1.190 17 H -0.201 1.201 18 H -0.208 1.208 19 C 0.027 3.973 20 C -0.159 4.159 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.165 4.165 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.125 0.875 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.083 0.917 47 H 0.069 0.931 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.463 5.660 -0.626 6.204 hybrid contribution -0.628 -0.247 -0.850 1.085 sum -3.091 5.413 -1.476 6.405 Atomic orbital electron populations 1.21892 0.95497 1.02074 1.01140 1.21148 0.95841 0.95834 0.98955 1.21841 1.00847 0.96360 1.01307 1.21651 1.00669 0.95678 0.97057 1.21663 1.00811 0.94362 0.98877 1.21343 1.01053 0.95103 0.96428 1.21686 1.01731 0.93871 0.99516 1.20434 0.81173 0.81704 0.86616 1.90476 1.42617 1.67245 1.49915 1.43481 1.41200 1.08428 1.23716 1.19127 1.02975 1.37080 0.86991 0.90122 1.25450 0.95809 0.95334 0.98510 1.70172 1.18895 1.44066 1.14860 0.86485 0.82858 0.78219 0.80913 1.19007 1.20088 1.20817 1.21567 0.93819 0.93224 0.88682 1.22596 0.98966 0.94470 0.99831 1.22455 0.96271 0.98746 0.98617 1.22252 0.96921 0.96351 0.99852 1.22401 1.00499 0.95049 0.98557 0.92861 0.93297 0.92160 0.91412 0.92850 0.93138 0.92860 0.92198 0.92174 0.92366 0.92191 0.92728 0.92191 0.87542 0.90802 0.92182 0.90612 0.89002 0.93218 0.92628 0.92474 0.93048 0.91724 0.93053 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.95 37.16 0.33 -1.33 16 2 C -0.10 -1.16 2.92 -90.62 -0.26 -1.43 16 3 C -0.15 -1.48 9.19 37.15 0.34 -1.14 16 4 C -0.11 -1.53 4.68 -26.73 -0.13 -1.66 16 5 C -0.12 -1.91 4.97 -26.73 -0.13 -2.05 16 6 C -0.10 -1.98 4.53 -26.73 -0.12 -2.10 16 7 C -0.13 -2.91 3.86 -27.88 -0.11 -3.02 16 8 C 0.51 13.11 7.26 -10.99 -0.08 13.03 16 9 O -0.62 -17.05 15.34 5.54 0.09 -16.96 16 10 N -0.45 -11.11 2.37 -106.54 -0.25 -11.36 16 11 C -0.33 -8.19 6.79 -14.93 -0.10 -8.29 16 12 H 0.08 1.96 7.29 -52.49 -0.38 1.58 16 13 C 0.06 1.36 3.35 -17.47 -0.06 1.30 16 14 N -0.84 -21.55 11.58 55.50 0.64 -20.90 16 15 Si 0.89 18.77 29.63 -169.99 -5.04 13.74 16 16 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 17 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 18 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 19 C 0.13 2.94 3.29 -66.81 -0.22 2.72 16 20 C -0.12 -2.51 6.42 -25.03 -0.16 -2.67 16 21 C -0.12 -2.06 6.91 -24.70 -0.17 -2.23 16 22 C -0.12 -1.92 6.83 -25.07 -0.17 -2.10 16 23 C -0.13 -2.42 6.26 -25.61 -0.16 -2.58 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.49 8.14 -51.92 -0.42 0.06 16 26 H 0.06 0.72 6.57 -51.93 -0.34 0.38 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.93 6.56 -51.93 -0.34 0.59 16 35 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.06 1.25 8.03 -51.93 -0.42 0.83 16 37 H 0.11 2.56 5.46 -51.93 -0.28 2.28 16 38 H 0.07 1.63 7.75 -51.93 -0.40 1.23 16 39 H 0.27 6.48 8.32 -40.82 -0.34 6.14 16 40 H 0.08 1.81 6.95 -51.93 -0.36 1.45 16 41 H 0.09 2.17 7.02 -51.93 -0.36 1.81 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 48 H 0.07 1.42 6.95 -51.92 -0.36 1.06 16 LS Contribution 367.61 15.07 5.54 5.54 Total: -1.00 -27.16 367.61 -9.37 -36.53 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -9.15 Total: 6.97 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -1.20 Total: -13.55 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: 0.39 Total: -32.27 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: 0.09 Total: -16.96 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.04 Total: 13.74 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.16 -9.37 -36.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457591196.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.299 kcal (2) G-P(sol) polarization free energy of solvation -27.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds