Wall clock time and date at job start Tue Mar 31 2020 05:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50700 * 109.47092 * 239.99574 * 2 1 3 5 5 H 1.08002 * 119.99770 * 239.99893 * 4 2 1 6 6 C 1.37876 * 119.99720 * 60.00211 * 4 2 1 7 7 N 1.31514 * 120.00513 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99651 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47037 * 59.99882 * 8 6 4 10 10 H 1.48501 * 109.46667 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47133 * 299.99829 * 8 6 4 12 12 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 13 13 N 1.46499 * 109.47198 * 299.99984 * 12 2 1 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 2 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 12 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 12 17 17 C 1.52999 * 109.47004 * 179.97438 * 16 14 13 18 18 C 1.53009 * 109.47094 * 59.99614 * 17 16 14 19 19 C 1.52998 * 109.47363 * 300.00059 * 17 16 14 20 20 C 1.52999 * 109.47363 * 179.97438 * 19 17 16 21 21 C 1.52998 * 109.47306 * 59.99817 * 20 19 17 22 22 C 1.53006 * 109.46950 * 300.00173 * 21 20 19 23 23 C 1.52998 * 109.47303 * 179.97438 * 17 16 14 24 24 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 25 25 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 26 26 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 29 29 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 30 30 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 31 31 H 1.09009 * 109.46730 * 179.97438 * 12 2 1 32 32 H 1.08998 * 109.46846 * 60.00315 * 12 2 1 33 33 H 0.97001 * 119.99790 * 359.97438 * 13 12 2 34 34 H 1.09003 * 109.47112 * 299.99065 * 16 14 13 35 35 H 1.08993 * 109.47916 * 59.99687 * 16 14 13 36 36 H 1.09001 * 109.46592 * 60.00382 * 18 17 16 37 37 H 1.09002 * 109.46680 * 179.97438 * 18 17 16 38 38 H 1.08990 * 109.47127 * 300.00256 * 18 17 16 39 39 H 1.09001 * 109.46908 * 299.99933 * 19 17 16 40 40 H 1.09003 * 109.47244 * 59.99731 * 19 17 16 41 41 H 1.09001 * 109.47054 * 299.99844 * 20 19 17 42 42 H 1.08995 * 109.46838 * 179.97438 * 20 19 17 43 43 H 1.09001 * 109.47080 * 179.97438 * 21 20 19 44 44 H 1.09001 * 109.47042 * 60.00020 * 21 20 19 45 45 H 1.09007 * 109.46697 * 299.99754 * 22 21 20 46 46 H 1.08998 * 109.46912 * 180.02562 * 22 21 20 47 47 H 1.08995 * 109.47540 * 300.00020 * 23 17 16 48 48 H 1.09001 * 109.46719 * 60.00219 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3225 -1.1198 -4.0079 9 1 1.8281 -2.5200 -4.0080 10 1 1.8279 -0.4195 -5.2204 11 1 3.8075 -1.1192 -4.0077 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8818 -0.4877 3.6695 15 8 2.5790 -1.4738 3.7808 16 6 1.3845 0.2264 4.8999 17 6 1.8986 -0.4919 6.1492 18 6 3.4287 -0.4931 6.1435 19 6 1.3876 -1.9340 6.1550 20 6 1.9021 -2.6524 7.4040 21 6 1.3978 -1.9276 8.6534 22 6 1.9090 -0.4855 8.6476 23 6 1.3943 0.2335 7.3984 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 0.7090 1.1613 -3.4845 31 1 3.1300 -0.7216 1.2491 32 1 1.6766 -1.7488 1.2493 33 1 0.9942 0.7584 2.3564 34 1 1.7484 1.2539 4.8956 35 1 0.2946 0.2270 4.9042 36 1 3.7927 0.5343 6.1394 37 1 3.7948 -1.0044 7.0338 38 1 3.7882 -1.0096 5.2536 39 1 0.2976 -1.9331 6.1590 40 1 1.7472 -2.4505 5.2650 41 1 2.9921 -2.6533 7.3995 42 1 1.5377 -3.6796 7.4082 43 1 1.7641 -2.4398 9.5432 44 1 0.3079 -1.9268 8.6579 45 1 2.9990 -0.4864 8.6432 46 1 1.5501 0.0307 9.5380 47 1 1.7587 1.2607 7.3941 48 1 0.3043 0.2346 7.4026 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457986967.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:54 Heat of formation + Delta-G solvation = -74.986435 kcal Electronic energy + Delta-G solvation = -23347.010745 eV Core-core repulsion = 20207.350885 eV Total energy + Delta-G solvation = -3139.659860 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.26566 -38.35619 -36.30835 -33.27040 -33.06478 -30.91384 -30.71731 -27.97413 -26.67262 -25.72662 -25.47211 -24.52203 -22.65648 -21.46266 -19.88585 -18.80784 -18.26905 -16.74547 -15.74602 -15.67063 -15.23409 -14.83236 -14.75941 -14.43616 -14.24141 -13.74645 -13.33168 -13.12687 -12.88601 -12.71690 -12.34523 -12.17904 -11.87336 -11.66598 -11.58437 -11.45908 -11.30334 -11.18259 -10.94437 -10.88933 -10.73438 -10.71609 -10.38338 -10.24644 -10.18200 -10.12598 -9.96652 -9.62143 -9.37397 -8.95660 -8.77101 -8.42438 -8.25256 -6.02094 -4.12319 3.12013 3.29908 3.34188 3.37650 3.81465 4.40134 4.60608 4.70328 4.75741 5.06648 5.13368 5.23114 5.24522 5.38177 5.41830 5.49293 5.57572 5.62263 5.64619 5.69813 5.82667 5.97647 5.98944 6.01133 6.11558 6.13980 6.23309 6.30822 6.34365 6.38101 6.44311 6.51835 6.64808 6.69843 6.82652 6.83106 6.94666 7.02193 7.12191 7.36656 7.55747 7.69239 8.01082 8.09420 8.18587 8.39058 8.79029 8.88936 9.53536 10.99239 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.040240 B = 0.003312 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.665680 B = 8452.527013 C = 8679.110230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.132 3.868 13 N -0.719 5.719 14 C 0.505 3.495 15 O -0.544 6.544 16 C -0.136 4.136 17 C -0.038 4.038 18 C -0.156 4.156 19 C -0.121 4.121 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.109 4.109 24 H 0.006 0.994 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.085 0.915 29 H 0.006 0.994 30 H 0.260 0.740 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.397 0.603 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.042 0.958 37 H 0.053 0.947 38 H 0.086 0.914 39 H 0.050 0.950 40 H 0.095 0.905 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.064 0.936 46 H 0.056 0.944 47 H 0.059 0.941 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.864 0.425 18.705 18.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.546 4.546 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.010 3.990 13 N -0.369 5.369 14 C 0.291 3.709 15 O -0.424 6.424 16 C -0.176 4.176 17 C -0.038 4.038 18 C -0.213 4.213 19 C -0.158 4.158 20 C -0.156 4.156 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.147 4.147 24 H 0.025 0.975 25 H 0.104 0.896 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.104 0.896 29 H 0.025 0.975 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.231 0.769 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.069 0.931 40 H 0.113 0.887 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.451 -0.161 18.602 18.608 hybrid contribution -0.047 0.048 -0.918 0.920 sum -0.498 -0.113 17.684 17.691 Atomic orbital electron populations 1.21824 0.97808 0.99119 1.00046 1.18343 0.92751 0.92724 0.90639 1.21827 0.98538 0.98399 1.00051 1.20965 1.31520 1.12110 0.89968 0.92523 1.24878 0.94854 0.94912 0.98834 1.69792 1.36672 1.22730 1.23317 0.86639 0.79252 0.79805 0.82199 1.20272 1.21326 1.20278 1.21674 0.98016 0.95729 0.83615 1.46381 1.52531 1.31817 1.06195 1.20555 0.80636 0.84900 0.84813 1.90527 1.38572 1.26813 1.86478 1.21785 1.02099 1.00408 0.93276 1.20194 0.96335 0.95165 0.92137 1.22199 0.94274 1.01160 1.03629 1.21841 0.99385 0.95064 0.99512 1.21547 1.01057 0.98466 0.94517 1.21547 1.00496 0.95735 0.97877 1.21555 1.01061 0.95710 0.97317 1.21619 1.00317 0.98625 0.94142 0.97508 0.89644 0.95501 0.95499 0.89638 0.97506 0.92956 0.92876 0.92870 0.76852 0.89405 0.89462 0.93923 0.92781 0.89547 0.93137 0.88714 0.91757 0.92582 0.92638 0.92369 0.91702 0.92543 0.92191 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 4 C -0.51 -13.30 8.01 -34.44 -0.28 -13.58 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.63 9.35 55.43 0.52 -23.12 16 8 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 C 0.13 2.78 4.50 -4.04 -0.02 2.77 16 13 N -0.72 -12.48 4.96 -60.29 -0.30 -12.78 16 14 C 0.50 8.24 7.24 -10.99 -0.08 8.16 16 15 O -0.54 -10.37 11.35 5.55 0.06 -10.31 16 16 C -0.14 -1.65 4.77 -27.88 -0.13 -1.79 16 17 C -0.04 -0.44 0.51 -154.51 -0.08 -0.52 16 18 C -0.16 -1.96 7.48 37.16 0.28 -1.68 16 19 C -0.12 -1.52 4.43 -26.73 -0.12 -1.64 16 20 C -0.12 -1.29 5.65 -26.73 -0.15 -1.44 16 21 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 22 C -0.12 -1.07 5.65 -26.70 -0.15 -1.22 16 23 C -0.11 -1.05 4.74 -26.71 -0.13 -1.18 16 24 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 25 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 29 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 30 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 31 H 0.05 1.18 8.14 -51.92 -0.42 0.76 16 32 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.40 6.27 6.16 -40.82 -0.25 6.02 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.62 4.80 -51.93 -0.25 0.37 16 38 H 0.09 1.34 5.51 -51.93 -0.29 1.06 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 1.48 5.51 -51.93 -0.29 1.19 16 41 H 0.06 0.72 6.43 -51.93 -0.33 0.39 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.60 6.43 -51.93 -0.33 0.26 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 347.98 15.07 5.24 5.24 Total: -1.00 -27.01 347.98 -8.62 -35.63 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -8.54 Total: 5.38 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -0.58 Total: -15.77 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.22 Total: -35.89 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.06 Total: -10.31 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.01 -8.62 -35.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457986967.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.356 kcal (2) G-P(sol) polarization free energy of solvation -27.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds