Wall clock time and date at job start Tue Mar 31 2020 05:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.53000 * 109.47060 * 300.00449 * 3 2 1 5 5 C 1.53002 * 109.47233 * 299.99657 * 4 3 2 6 6 C 1.52997 * 109.47415 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47191 * 175.00056 * 6 5 4 8 8 O 1.21279 * 120.00071 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99737 * 179.97438 * 7 6 5 10 10 C 1.46502 * 119.99848 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47303 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47075 * 299.99777 * 11 10 9 13 13 C 1.53002 * 109.46921 * 59.99839 * 11 10 9 14 14 C 1.50698 * 109.47191 * 179.97438 * 11 10 9 15 15 H 1.08001 * 120.00196 * 0.02562 * 14 11 10 16 16 C 1.37876 * 119.99944 * 179.97438 * 14 11 10 17 17 N 1.31509 * 119.99946 * 0.02562 * 16 14 11 18 18 Si 1.86804 * 119.99993 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.46834 * 60.00629 * 18 16 14 20 20 H 1.48503 * 109.46853 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47105 * 300.00685 * 18 16 14 22 22 C 1.52997 * 109.46817 * 60.00194 * 5 4 3 23 23 C 1.52999 * 109.46623 * 240.00064 * 2 1 3 24 24 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 27 27 H 1.08996 * 109.46884 * 120.00752 * 2 1 3 28 28 H 1.09002 * 109.47153 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46832 * 60.00321 * 3 2 1 30 30 H 1.08992 * 109.47399 * 59.99823 * 4 3 2 31 31 H 1.09004 * 109.46724 * 180.02562 * 4 3 2 32 32 H 1.09002 * 109.47075 * 300.00932 * 5 4 3 33 33 H 1.09000 * 109.46818 * 295.00198 * 6 5 4 34 34 H 1.09001 * 109.47096 * 55.00094 * 6 5 4 35 35 H 0.96993 * 120.00210 * 359.97438 * 9 7 6 36 36 H 1.09000 * 109.47104 * 300.00326 * 10 9 7 37 37 H 1.09001 * 109.47198 * 59.99909 * 10 9 7 38 38 H 1.09008 * 109.47296 * 59.99644 * 12 11 10 39 39 H 1.08992 * 109.47417 * 179.97438 * 12 11 10 40 40 H 1.09001 * 109.47187 * 299.99980 * 12 11 10 41 41 H 1.09000 * 109.47312 * 60.00379 * 13 11 10 42 42 H 1.08996 * 109.46657 * 180.02562 * 13 11 10 43 43 H 1.08998 * 109.46677 * 299.99760 * 13 11 10 44 44 H 0.97004 * 120.00063 * 179.97438 * 17 16 14 45 45 H 1.09002 * 109.47153 * 60.00231 * 22 5 4 46 46 H 1.09001 * 109.47289 * 180.02562 * 22 5 4 47 47 H 1.09000 * 109.47486 * 299.99829 * 23 2 1 48 48 H 1.09002 * 109.46716 * 179.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5300 2.1637 -1.2492 5 6 2.0399 1.4426 -2.4985 6 6 1.5304 2.1642 -3.7477 7 6 2.1313 1.5289 -4.9750 8 8 2.8918 0.5910 -4.8618 9 7 1.8227 2.0024 -6.1986 10 6 2.4064 1.3844 -7.3918 11 6 1.8969 2.1061 -8.6410 12 6 0.3721 1.9992 -8.7055 13 6 2.3028 3.5801 -8.5795 14 6 2.4979 1.4709 -9.8683 15 1 3.1751 0.6356 -9.7675 16 6 2.1823 1.9553 -11.1200 17 7 1.3573 2.9720 -11.2428 18 14 2.9278 1.1683 -12.6413 19 1 2.5353 -0.2627 -12.7011 20 1 2.4331 1.8688 -13.8538 21 1 4.4076 1.2735 -12.5784 22 6 1.5299 0.0001 -2.4985 23 6 2.0399 -0.7213 -1.2493 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9562 0.8900 30 1 0.4400 2.1637 -1.2492 31 1 1.8937 3.1913 -1.2494 32 1 3.1299 1.4425 -2.4985 33 1 0.4441 2.0876 -3.7938 34 1 1.8191 3.2143 -3.7038 35 1 1.2136 2.7517 -6.2892 36 1 3.4927 1.4609 -7.3461 37 1 2.1177 0.3343 -7.4353 38 1 -0.0623 2.4589 -7.8176 39 1 0.0091 2.5137 -9.5951 40 1 0.0830 0.9491 -8.7492 41 1 3.3891 3.6562 -8.5336 42 1 1.9394 4.0942 -9.4693 43 1 1.8684 4.0397 -7.6918 44 1 1.1355 3.3131 -12.1234 45 1 0.4399 0.0001 -2.4985 46 1 1.8936 -0.5139 -3.3883 47 1 1.6766 -1.7489 -1.2493 48 1 3.1300 -0.7209 -1.2495 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457987440.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:56 Heat of formation + Delta-G solvation = -83.267980 kcal Electronic energy + Delta-G solvation = -22970.008281 eV Core-core repulsion = 19829.989306 eV Total energy + Delta-G solvation = -3140.018975 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.92322 -38.55887 -36.34443 -33.35719 -33.23567 -30.89379 -30.76945 -28.58894 -26.28291 -25.72418 -25.39944 -24.39055 -22.66936 -21.35328 -19.78220 -18.74541 -18.69727 -16.73644 -15.87388 -15.72698 -15.23259 -15.04506 -14.70365 -14.57936 -13.95282 -13.86588 -13.42560 -13.12693 -12.85684 -12.74498 -12.49337 -12.19344 -12.02534 -11.87939 -11.55143 -11.51664 -11.30765 -11.18014 -11.02492 -10.91691 -10.83537 -10.72619 -10.38429 -10.22424 -10.18431 -10.13774 -9.99217 -9.62537 -9.42994 -9.10235 -8.78302 -8.42721 -8.26400 -6.01873 -4.12030 3.13794 3.30117 3.34326 3.37860 3.81927 4.40355 4.58039 4.64094 4.70260 5.03709 5.06895 5.13750 5.24756 5.29872 5.36579 5.42474 5.52903 5.55559 5.60028 5.67670 5.71906 5.80965 5.86647 5.93736 6.00937 6.10175 6.15806 6.23841 6.28605 6.32332 6.35057 6.51914 6.55420 6.58809 6.80970 6.82825 6.94905 7.02471 7.09134 7.36532 7.56059 7.69518 8.01339 8.09710 8.18886 8.39330 8.78451 8.89129 9.53777 10.99486 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.040386 B = 0.003068 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.137550 B = 9124.096106 C = 9331.291118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 C -0.112 4.112 4 C -0.117 4.117 5 C -0.068 4.068 6 C -0.140 4.140 7 C 0.503 3.497 8 O -0.550 6.550 9 N -0.719 5.719 10 C 0.132 3.868 11 C 0.056 3.944 12 C -0.130 4.130 13 C -0.130 4.130 14 C -0.507 4.507 15 H 0.057 0.943 16 C 0.066 3.934 17 N -0.887 5.887 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.121 4.121 23 C -0.112 4.112 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.397 0.603 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.006 0.994 39 H 0.085 0.915 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.085 0.915 43 H 0.006 0.994 44 H 0.260 0.740 45 H 0.056 0.944 46 H 0.084 0.916 47 H 0.057 0.943 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.868 -0.326 19.499 19.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 C -0.150 4.150 4 C -0.154 4.154 5 C -0.087 4.087 6 C -0.180 4.180 7 C 0.289 3.711 8 O -0.429 6.429 9 N -0.370 5.370 10 C 0.009 3.991 11 C 0.055 3.945 12 C -0.188 4.188 13 C -0.188 4.188 14 C -0.546 4.546 15 H 0.075 0.925 16 C -0.135 4.135 17 N -0.525 5.525 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.159 4.159 23 C -0.149 4.149 24 H 0.082 0.918 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.232 0.768 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.025 0.975 39 H 0.104 0.896 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.104 0.896 43 H 0.025 0.975 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.102 0.898 47 H 0.076 0.924 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.407 -0.882 19.399 19.567 hybrid contribution 0.075 0.011 -0.959 0.962 sum -2.332 -0.871 18.440 18.607 Atomic orbital electron populations 1.21938 0.95541 1.01480 1.01785 1.21112 0.95822 0.96049 0.98147 1.21530 1.00560 0.95334 0.97563 1.21647 1.00921 0.98633 0.94242 1.20863 1.01035 0.94834 0.91919 1.21763 1.01842 1.00914 0.93449 1.20608 0.81780 0.83872 0.84885 1.90623 1.36741 1.28790 1.86793 1.46363 1.48327 1.35962 1.06352 1.21675 0.96982 0.96691 0.83710 1.18341 0.92962 0.92533 0.90614 1.21824 0.97610 0.99224 1.00141 1.21827 0.98487 0.98524 0.99984 1.20966 1.27401 1.16069 0.90126 0.92524 1.24877 0.94910 0.94877 0.98819 1.69793 1.34658 1.24739 1.23323 0.86637 0.79590 0.79489 0.82166 1.20272 1.21318 1.20282 1.21741 0.99918 0.95328 0.98880 1.21530 1.00601 0.98531 0.94260 0.91847 0.93051 0.93196 0.91823 0.92078 0.92333 0.91709 0.92199 0.90570 0.89412 0.89367 0.76833 0.92897 0.92892 0.97504 0.89631 0.95498 0.95488 0.89629 0.97502 0.92958 0.92552 0.89758 0.92404 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.50 37.16 0.32 -0.94 16 2 C -0.09 -0.83 3.20 -90.62 -0.29 -1.12 16 3 C -0.11 -0.98 5.45 -26.73 -0.15 -1.13 16 4 C -0.12 -1.08 4.93 -26.73 -0.13 -1.21 16 5 C -0.07 -0.79 1.84 -90.62 -0.17 -0.95 16 6 C -0.14 -1.68 5.18 -27.89 -0.14 -1.83 16 7 C 0.50 8.41 7.55 -10.99 -0.08 8.33 16 8 O -0.55 -11.05 13.96 5.56 0.08 -10.97 16 9 N -0.72 -12.67 4.96 -60.29 -0.30 -12.97 16 10 C 0.13 2.82 4.50 -4.04 -0.02 2.80 16 11 C 0.06 1.30 0.50 -155.66 -0.08 1.23 16 12 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 13 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 14 C -0.51 -13.36 8.01 -34.44 -0.28 -13.64 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 17 N -0.89 -23.68 9.35 55.43 0.52 -23.16 16 18 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 22 C -0.12 -1.49 4.67 -26.73 -0.12 -1.61 16 23 C -0.11 -1.19 5.45 -26.73 -0.15 -1.34 16 24 H 0.06 0.56 4.81 -51.93 -0.25 0.31 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.57 6.43 -51.93 -0.33 0.23 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 1.02 7.96 -51.93 -0.41 0.61 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.40 6.31 6.16 -40.82 -0.25 6.06 16 36 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.01 0.12 6.86 -51.92 -0.36 -0.24 16 39 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 43 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 44 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 45 H 0.06 0.65 6.43 -51.93 -0.33 0.31 16 46 H 0.08 1.30 5.95 -51.93 -0.31 0.99 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 353.85 15.07 5.33 5.33 Total: -1.00 -27.72 353.85 -8.87 -36.58 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -8.69 Total: 4.45 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -0.78 Total: -15.04 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.22 Total: -36.12 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.08 Total: -10.97 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.72 -8.87 -36.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457987440.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.686 kcal (2) G-P(sol) polarization free energy of solvation -27.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds