Wall clock time and date at job start Tue Mar 31 2020 05:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47231 * 2 1 4 4 C 1.53006 * 109.46841 * 119.99826 * 2 1 3 5 5 C 1.52995 * 109.47501 * 64.09846 * 4 2 1 6 6 C 1.50707 * 112.84832 * 54.35294 * 5 4 2 7 7 O 1.21282 * 119.99836 * 357.44513 * 6 5 4 8 8 N 1.34771 * 119.99994 * 177.71216 * 6 5 4 9 9 C 1.46503 * 119.99700 * 179.72698 * 8 6 5 10 10 C 1.53007 * 109.47021 * 180.02562 * 9 8 6 11 11 C 1.53007 * 109.46643 * 299.99595 * 10 9 8 12 12 C 1.52995 * 109.47382 * 59.99524 * 10 9 8 13 13 C 1.50696 * 109.47117 * 180.02562 * 10 9 8 14 14 H 1.08001 * 119.99919 * 359.97438 * 13 10 9 15 15 C 1.37882 * 119.99728 * 179.97438 * 13 10 9 16 16 N 1.31503 * 120.00111 * 359.97438 * 15 13 10 17 17 Si 1.86806 * 119.99685 * 179.97438 * 15 13 10 18 18 H 1.48507 * 109.46884 * 60.00243 * 17 15 13 19 19 H 1.48493 * 109.46775 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47204 * 300.00243 * 17 15 13 21 21 C 1.53776 * 113.69163 * 185.61844 * 5 4 2 22 22 C 1.53787 * 87.07864 * 89.13263 * 21 5 4 23 23 C 1.53778 * 113.61881 * 283.16191 * 5 4 2 24 24 H 1.08999 * 109.46924 * 290.25628 * 1 2 3 25 25 H 1.08998 * 109.46930 * 50.25865 * 1 2 3 26 26 H 1.09003 * 109.47130 * 170.25481 * 1 2 3 27 27 H 1.09003 * 109.47205 * 239.99299 * 2 1 3 28 28 H 1.09007 * 109.46987 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.46817 * 299.99450 * 3 2 1 30 30 H 1.08989 * 109.47507 * 59.99664 * 3 2 1 31 31 H 1.09003 * 109.46777 * 304.10089 * 4 2 1 32 32 H 1.09003 * 109.47186 * 184.10449 * 4 2 1 33 33 H 0.97000 * 120.00348 * 359.72902 * 8 6 5 34 34 H 1.08999 * 109.47319 * 299.99915 * 9 8 6 35 35 H 1.08993 * 109.47341 * 60.00172 * 9 8 6 36 36 H 1.09003 * 109.46983 * 60.00175 * 11 10 9 37 37 H 1.08999 * 109.46845 * 179.97438 * 11 10 9 38 38 H 1.08993 * 109.47324 * 300.00074 * 11 10 9 39 39 H 1.09002 * 109.46874 * 60.00038 * 12 10 9 40 40 H 1.08999 * 109.47486 * 180.02562 * 12 10 9 41 41 H 1.09003 * 109.47262 * 300.00448 * 12 10 9 42 42 H 0.97007 * 120.00324 * 179.97438 * 16 15 13 43 43 H 1.09001 * 113.61450 * 203.67701 * 21 5 4 44 44 H 1.08993 * 113.62119 * 334.58507 * 21 5 4 45 45 H 1.08999 * 113.61216 * 270.88021 * 22 21 5 46 46 H 1.09004 * 113.61408 * 139.98414 * 22 21 5 47 47 H 1.09001 * 113.61326 * 25.34286 * 23 5 4 48 48 H 1.08996 * 113.61849 * 156.25180 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6159 -2.1904 1.1990 6 6 2.0454 -2.8803 -0.0702 7 8 2.6195 -2.2545 -0.9361 8 7 1.7868 -4.1913 -0.2453 9 6 2.1990 -4.8605 -1.4817 10 6 1.7880 -6.3332 -1.4259 11 6 2.4657 -7.0069 -0.2310 12 6 0.2689 -6.4334 -1.2738 13 6 2.2126 -7.0217 -2.6974 14 1 2.7241 -6.4645 -3.4683 15 6 1.9481 -8.3630 -2.8764 16 7 1.3257 -9.0416 -1.9375 17 14 2.4738 -9.2163 -4.4529 18 1 3.9482 -9.1185 -4.6006 19 1 2.0749 -10.6457 -4.3986 20 1 1.8157 -8.5629 -5.6126 21 6 1.9605 -2.9771 2.4746 22 6 0.5882 -2.5446 3.0175 23 6 0.1367 -2.4172 1.5529 24 1 -0.3633 0.3558 0.9641 25 1 -0.3633 0.6570 -0.7902 26 1 -0.3633 -1.0129 -0.1740 27 1 1.8934 -0.5140 -0.8899 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9562 -0.8900 30 1 1.6767 1.9563 0.8898 31 1 1.6178 -0.2515 2.1378 32 1 3.1275 -0.6580 1.2869 33 1 1.3277 -4.6918 0.4472 34 1 1.7160 -4.3808 -2.3329 35 1 3.2812 -4.7888 -1.5902 36 1 2.1590 -6.5090 0.6889 37 1 2.1726 -8.0560 -0.1909 38 1 3.5479 -6.9356 -0.3393 39 1 -0.2139 -5.9534 -2.1251 40 1 -0.0239 -7.4825 -1.2336 41 1 -0.0378 -5.9355 -0.3539 42 1 1.1393 -9.9852 -2.0636 43 1 2.0478 -4.0517 2.3146 44 1 2.8007 -2.5613 3.0305 45 1 0.6097 -1.5949 3.5520 46 1 0.0692 -3.3295 3.5677 47 1 -0.4953 -1.5492 1.3648 48 1 -0.2745 -3.3388 1.1411 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457995034.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:40 Heat of formation + Delta-G solvation = -37.742155 kcal Electronic energy + Delta-G solvation = -23845.801115 eV Core-core repulsion = 20707.756288 eV Total energy + Delta-G solvation = -3138.044827 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.77815 -37.82066 -36.33590 -35.29291 -33.10467 -30.80437 -28.54347 -27.56600 -26.04053 -25.73808 -25.32177 -25.21748 -23.59945 -20.80030 -20.20787 -18.78016 -18.56175 -16.94006 -15.86564 -15.61482 -15.02210 -14.85604 -14.70482 -14.55028 -13.94360 -13.61408 -13.35790 -12.91755 -12.82993 -12.47149 -12.31359 -12.16334 -12.09302 -11.90412 -11.75066 -11.47596 -11.35530 -11.21078 -11.13547 -10.85321 -10.73710 -10.59550 -10.50479 -10.38674 -10.19545 -10.14319 -9.85534 -9.63040 -9.36950 -8.89909 -8.75192 -8.42409 -8.25642 -6.01993 -4.12047 3.04195 3.30076 3.34343 3.37850 3.78758 4.40087 4.52592 4.59738 4.64886 4.75362 5.10394 5.14825 5.21050 5.24693 5.34149 5.55356 5.59359 5.68174 5.68402 5.79577 5.83480 5.85607 5.91932 5.94427 5.97761 6.06628 6.16434 6.23826 6.28688 6.34278 6.39268 6.44106 6.51532 6.70810 6.81633 6.83329 6.94293 7.01737 7.11631 7.36150 7.55296 7.69198 8.00559 8.09302 8.18908 8.38962 8.79394 8.89028 9.53702 10.99324 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026446 B = 0.004208 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.508245 B = 6652.533050 C = 7160.250618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.142 4.142 4 C -0.070 4.070 5 C -0.102 4.102 6 C 0.518 3.482 7 O -0.547 6.547 8 N -0.715 5.715 9 C 0.132 3.868 10 C 0.056 3.944 11 C -0.130 4.130 12 C -0.129 4.129 13 C -0.506 4.506 14 H 0.056 0.944 15 C 0.067 3.933 16 N -0.886 5.886 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.129 4.129 22 C -0.138 4.138 23 C -0.142 4.142 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.111 0.889 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.396 0.604 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.005 0.995 37 H 0.085 0.915 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.085 0.915 41 H 0.005 0.995 42 H 0.260 0.740 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.070 0.930 47 H 0.091 0.909 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.642 13.522 10.074 17.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.136 4.136 3 C -0.199 4.199 4 C -0.107 4.107 5 C -0.105 4.105 6 C 0.304 3.696 7 O -0.427 6.427 8 N -0.365 5.365 9 C 0.010 3.990 10 C 0.055 3.945 11 C -0.187 4.187 12 C -0.187 4.187 13 C -0.545 4.545 14 H 0.075 0.925 15 C -0.134 4.134 16 N -0.525 5.525 17 Si 0.721 3.279 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.167 4.167 22 C -0.175 4.175 23 C -0.179 4.179 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.129 0.871 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.232 0.768 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.024 0.976 37 H 0.104 0.896 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.104 0.896 41 H 0.024 0.976 42 H 0.070 0.930 43 H 0.105 0.895 44 H 0.091 0.909 45 H 0.099 0.901 46 H 0.089 0.911 47 H 0.109 0.891 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.295 13.744 9.469 16.847 hybrid contribution 0.091 -0.816 -0.520 0.972 sum -2.204 12.927 8.949 15.876 Atomic orbital electron populations 1.22116 0.96247 1.01753 1.00658 1.21507 0.95209 0.95864 1.00986 1.21793 1.00808 0.96440 1.00864 1.21158 1.00810 0.90844 0.97922 1.22108 0.98173 0.96884 0.93312 1.20270 0.79069 0.82329 0.87920 1.90526 1.42628 1.64561 1.44948 1.46304 1.59193 1.09399 1.21644 1.21692 0.98716 0.94666 0.83958 1.18348 0.92788 0.87864 0.95460 1.21823 0.98306 1.03763 0.94851 1.21818 0.97611 1.03276 0.96016 1.20947 1.37701 0.94327 1.01493 0.92540 1.24871 0.94838 0.97268 0.96470 1.69789 1.41222 1.08667 1.32788 0.86640 0.79099 0.78365 0.83797 1.20286 1.21330 1.20293 1.23004 0.98046 1.00309 0.95304 1.22837 0.96668 1.01633 0.96410 1.23396 0.94787 1.03464 0.96263 0.93253 0.93340 0.91962 0.87108 0.92972 0.93094 0.93552 0.91797 0.91605 0.76839 0.92840 0.92844 0.97635 0.89609 0.95473 0.95472 0.89630 0.97620 0.92967 0.89495 0.90876 0.90063 0.91128 0.89113 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 7.54 37.16 0.28 -1.44 16 2 C -0.12 -1.50 2.66 -90.62 -0.24 -1.74 16 3 C -0.14 -1.55 9.18 37.16 0.34 -1.21 16 4 C -0.07 -0.84 3.99 -26.73 -0.11 -0.95 16 5 C -0.10 -1.31 0.78 -154.85 -0.12 -1.43 16 6 C 0.52 8.88 6.84 -10.98 -0.08 8.80 16 7 O -0.55 -11.10 13.62 5.56 0.08 -11.03 16 8 N -0.71 -12.69 4.56 -60.29 -0.27 -12.96 16 9 C 0.13 2.82 4.50 -4.04 -0.02 2.80 16 10 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 11 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 12 C -0.13 -2.91 8.08 37.15 0.30 -2.61 16 13 C -0.51 -13.26 8.01 -34.44 -0.28 -13.53 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 16 N -0.89 -23.53 9.35 55.43 0.52 -23.01 16 17 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 21 C -0.13 -1.44 7.08 -25.92 -0.18 -1.62 16 22 C -0.14 -1.30 7.73 -25.91 -0.20 -1.50 16 23 C -0.14 -1.57 5.95 -25.92 -0.15 -1.73 16 24 H 0.05 0.48 7.63 -51.93 -0.40 0.09 16 25 H 0.05 0.53 8.12 -51.93 -0.42 0.11 16 26 H 0.06 0.76 5.76 -51.93 -0.30 0.47 16 27 H 0.11 1.81 5.15 -51.93 -0.27 1.54 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.44 8.14 -51.94 -0.42 0.02 16 31 H 0.06 0.65 7.31 -51.93 -0.38 0.27 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.40 6.46 4.48 -40.82 -0.18 6.28 16 34 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 37 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 41 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 42 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 43 H 0.09 1.03 7.07 -51.93 -0.37 0.66 16 44 H 0.07 0.76 8.10 -51.93 -0.42 0.33 16 45 H 0.08 0.67 7.61 -51.93 -0.40 0.28 16 46 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.09 0.94 4.61 -51.93 -0.24 0.70 16 48 H 0.08 1.01 7.37 -51.93 -0.38 0.63 16 LS Contribution 352.86 15.07 5.32 5.32 Total: -1.00 -27.32 352.86 -8.15 -35.47 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -8.44 Total: 6.39 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -0.32 Total: -15.89 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.24 Total: -35.98 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.08 Total: -11.03 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -27.32 -8.15 -35.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457995034.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.276 kcal (2) G-P(sol) polarization free energy of solvation -27.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds