Wall clock time and date at job start Tue Mar 31 2020 05:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47208 * 2 1 4 4 C 1.50698 * 109.47633 * 55.42140 * 3 2 1 5 5 O 1.21282 * 120.00216 * 247.09881 * 4 3 2 6 6 N 1.34780 * 119.99696 * 67.09130 * 4 3 2 7 7 C 1.46499 * 119.99657 * 175.03526 * 6 4 3 8 8 C 1.53003 * 109.46903 * 180.02562 * 7 6 4 9 9 C 1.52991 * 109.47256 * 299.99896 * 8 7 6 10 10 C 1.52999 * 109.47125 * 60.00140 * 8 7 6 11 11 C 1.50697 * 109.47084 * 179.97438 * 8 7 6 12 12 H 1.08001 * 119.99852 * 359.97438 * 11 8 7 13 13 C 1.37878 * 120.00329 * 180.02562 * 11 8 7 14 14 N 1.31513 * 119.99614 * 359.97438 * 13 11 8 15 15 Si 1.86791 * 120.00304 * 179.97438 * 13 11 8 16 16 H 1.48499 * 109.47109 * 89.99802 * 15 13 11 17 17 H 1.48497 * 109.47337 * 209.99568 * 15 13 11 18 18 H 1.48504 * 109.47389 * 329.99916 * 15 13 11 19 19 C 1.53009 * 109.46820 * 295.41920 * 3 2 1 20 20 C 1.53001 * 109.46634 * 180.02562 * 19 3 2 21 21 C 1.52994 * 109.47492 * 60.00146 * 20 19 3 22 22 C 1.52999 * 109.47215 * 299.99948 * 21 20 19 23 23 C 1.53003 * 109.47331 * 59.99873 * 22 21 20 24 24 H 1.09005 * 109.46617 * 304.94857 * 1 2 3 25 25 H 1.09002 * 109.46872 * 64.94223 * 1 2 3 26 26 H 1.08992 * 109.47535 * 184.94528 * 1 2 3 27 27 H 1.09004 * 109.46885 * 239.99859 * 2 1 3 28 28 H 1.09004 * 109.46986 * 119.99736 * 2 1 3 29 29 H 0.97000 * 119.99848 * 355.03312 * 6 4 3 30 30 H 1.09001 * 109.46980 * 300.00210 * 7 6 4 31 31 H 1.08998 * 109.47410 * 59.99732 * 7 6 4 32 32 H 1.09002 * 109.47433 * 59.99824 * 9 8 7 33 33 H 1.08994 * 109.47592 * 179.97438 * 9 8 7 34 34 H 1.08999 * 109.47478 * 300.00043 * 9 8 7 35 35 H 1.09001 * 109.47173 * 59.99583 * 10 8 7 36 36 H 1.08999 * 109.47542 * 180.02562 * 10 8 7 37 37 H 1.09008 * 109.47120 * 300.00079 * 10 8 7 38 38 H 0.97001 * 120.00196 * 180.02562 * 14 13 11 39 39 H 1.08997 * 109.46970 * 60.00495 * 19 3 2 40 40 H 1.08995 * 109.46994 * 299.99913 * 19 3 2 41 41 H 1.09004 * 109.47362 * 299.99549 * 20 19 3 42 42 H 1.09003 * 109.46645 * 180.02562 * 20 19 3 43 43 H 1.09008 * 109.47242 * 59.99876 * 21 20 19 44 44 H 1.09002 * 109.47399 * 179.97438 * 21 20 19 45 45 H 1.08997 * 109.47123 * 179.97438 * 22 21 20 46 46 H 1.09005 * 109.47210 * 299.99643 * 22 21 20 47 47 H 1.08990 * 109.47250 * 180.02562 * 23 22 21 48 48 H 1.08996 * 109.46901 * 59.99759 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4473 2.1850 1.1698 5 8 0.6591 3.0868 0.9792 6 7 1.7931 1.8467 2.4278 7 6 1.3027 2.6369 3.5597 8 6 1.8386 2.0451 4.8650 9 6 1.3568 0.5998 5.0053 10 6 3.3682 2.0734 4.8477 11 6 1.3347 2.8583 6.0294 12 1 0.6965 3.7121 5.8558 13 6 1.6893 2.5130 7.3162 14 7 2.4668 1.4736 7.5276 15 14 1.0653 3.5214 8.7595 16 1 -0.2275 2.9633 9.2311 17 1 2.0575 3.4726 9.8632 18 1 0.8698 4.9299 8.3315 19 6 1.6262 2.1297 -1.3030 20 6 2.1368 3.5720 -1.3032 21 6 3.6624 3.5730 -1.1883 22 6 4.0763 2.8858 0.1145 23 6 3.5658 1.4434 0.1148 24 1 -0.3633 0.5887 0.8424 25 1 -0.3633 0.4353 -0.9310 26 1 -0.3634 -1.0237 0.0886 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.3665 1.0800 2.5836 30 1 1.6463 3.6665 3.4600 31 1 0.2130 2.6171 3.5718 32 1 1.7216 0.0118 4.1630 33 1 1.7389 0.1780 5.9348 34 1 0.2671 0.5795 5.0176 35 1 3.7114 3.1032 4.7477 36 1 3.7500 1.6514 5.7773 37 1 3.7330 1.4855 4.0054 38 1 2.7160 1.2303 8.4329 39 1 0.5393 2.1286 -1.3849 40 1 2.0550 1.5927 -2.1490 41 1 1.7083 4.1093 -0.4571 42 1 1.8416 4.0617 -2.2312 43 1 4.0909 3.0357 -2.0345 44 1 4.0262 4.6005 -1.1889 45 1 5.1632 2.8861 0.1961 46 1 3.6479 3.4230 0.9607 47 1 3.8602 0.9540 1.0431 48 1 3.9941 0.9062 -0.7313 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457996803.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:49 Heat of formation + Delta-G solvation = -79.117524 kcal Electronic energy + Delta-G solvation = -24312.574994 eV Core-core repulsion = 21172.735996 eV Total energy + Delta-G solvation = -3139.838997 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.63427 -37.38637 -36.07706 -34.10467 -33.20570 -31.09143 -30.29977 -29.09020 -25.73045 -25.71443 -25.04732 -23.78012 -22.67865 -21.85464 -20.34509 -18.99666 -18.65259 -16.34514 -15.91255 -15.50239 -15.21380 -14.86554 -14.63839 -14.05012 -13.81195 -13.77639 -13.31448 -13.23923 -12.90148 -12.55063 -12.43835 -12.19210 -12.07006 -11.82495 -11.53684 -11.38594 -11.31868 -11.17078 -10.99301 -10.97131 -10.85060 -10.68994 -10.47857 -10.33851 -10.18904 -9.99532 -9.89877 -9.61606 -9.39583 -9.00499 -8.75941 -8.41544 -8.23029 -6.01380 -4.11271 3.17196 3.28503 3.35526 3.39402 3.82311 4.40714 4.59162 4.71467 4.79351 5.07928 5.18634 5.21407 5.25386 5.34284 5.41747 5.46558 5.58128 5.64271 5.66151 5.74136 5.87482 5.97678 6.00559 6.02928 6.11357 6.23890 6.26790 6.30525 6.31475 6.34892 6.36028 6.45709 6.53086 6.64128 6.82704 6.83743 6.96137 7.03288 7.12195 7.37759 7.56820 7.70219 8.01967 8.11329 8.21590 8.40124 8.81441 8.90284 9.54490 10.99956 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025023 B = 0.004614 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.704762 B = 6067.593519 C = 6317.009033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.111 4.111 3 C -0.078 4.078 4 C 0.522 3.478 5 O -0.550 6.550 6 N -0.717 5.717 7 C 0.133 3.867 8 C 0.056 3.944 9 C -0.130 4.130 10 C -0.129 4.129 11 C -0.505 4.505 12 H 0.056 0.944 13 C 0.066 3.934 14 N -0.886 5.886 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.090 4.090 20 C -0.131 4.131 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.106 4.106 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.396 0.604 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.005 0.995 33 H 0.085 0.915 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.085 0.915 37 H 0.005 0.995 38 H 0.259 0.741 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.087 0.913 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.731 -3.107 -15.720 16.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.148 4.148 3 C -0.082 4.082 4 C 0.308 3.692 5 O -0.429 6.429 6 N -0.367 5.367 7 C 0.010 3.990 8 C 0.056 3.944 9 C -0.187 4.187 10 C -0.187 4.187 11 C -0.543 4.543 12 H 0.075 0.925 13 C -0.135 4.135 14 N -0.525 5.525 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.128 4.128 20 C -0.168 4.168 21 C -0.154 4.154 22 C -0.161 4.161 23 C -0.144 4.144 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.231 0.769 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.024 0.976 33 H 0.103 0.897 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.103 0.897 37 H 0.024 0.976 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.105 0.895 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.264 -2.538 -15.663 16.028 hybrid contribution -0.020 0.127 0.970 0.978 sum 2.244 -2.411 -14.694 15.058 Atomic orbital electron populations 1.21845 0.95345 1.01620 1.02514 1.21560 0.96585 0.94147 1.02539 1.20937 0.96182 0.95970 0.95082 1.20251 0.81230 0.83599 0.84117 1.90602 1.35056 1.31822 1.85428 1.46316 1.51605 1.32682 1.06088 1.21663 0.98068 0.93946 0.85283 1.18339 0.92699 0.93331 0.90060 1.21814 0.98611 0.97550 1.00754 1.21816 0.97891 0.98421 1.00576 1.20988 1.30325 1.12717 0.90315 0.92531 1.24873 0.94852 0.95090 0.98679 1.69804 1.35727 1.26151 1.20787 0.86585 0.78541 0.80705 0.82126 1.20729 1.21280 1.19933 1.21352 1.01324 0.95610 0.94471 1.21725 0.95095 0.97106 1.02912 1.21529 0.96494 1.00085 0.97333 1.21563 1.00416 0.95652 0.98474 1.21596 0.92957 0.97519 1.02344 0.92214 0.92426 0.92666 0.91170 0.91468 0.76900 0.93035 0.92919 0.97571 0.89666 0.95511 0.95514 0.89666 0.97557 0.93046 0.91178 0.92093 0.89479 0.92650 0.92520 0.92390 0.91891 0.91551 0.91473 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.32 37.16 0.35 -1.55 16 2 C -0.11 -1.25 4.97 -26.73 -0.13 -1.38 16 3 C -0.08 -1.01 0.42 -155.66 -0.07 -1.07 16 4 C 0.52 8.79 3.28 -10.98 -0.04 8.75 16 5 O -0.55 -11.07 13.97 5.56 0.08 -10.99 16 6 N -0.72 -12.63 4.76 -60.29 -0.29 -12.92 16 7 C 0.13 2.82 4.51 -4.04 -0.02 2.80 16 8 C 0.06 1.30 0.50 -155.67 -0.08 1.22 16 9 C -0.13 -2.92 8.08 37.15 0.30 -2.62 16 10 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 11 C -0.50 -13.23 8.01 -34.44 -0.28 -13.50 16 12 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 13 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 14 N -0.89 -23.57 9.35 55.43 0.52 -23.05 16 15 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 19 C -0.09 -1.11 4.10 -26.73 -0.11 -1.22 16 20 C -0.13 -1.69 5.63 -26.73 -0.15 -1.85 16 21 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 22 C -0.12 -1.53 5.70 -26.73 -0.15 -1.68 16 23 C -0.11 -1.23 4.58 -26.73 -0.12 -1.35 16 24 H 0.06 0.89 6.90 -51.93 -0.36 0.53 16 25 H 0.06 0.66 6.80 -51.93 -0.35 0.31 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.76 8.04 -51.93 -0.42 0.34 16 29 H 0.40 6.48 5.21 -40.82 -0.21 6.26 16 30 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 33 H 0.08 2.12 6.07 -51.93 -0.32 1.81 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 37 H 0.01 0.11 6.86 -51.92 -0.36 -0.25 16 38 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 39 H 0.07 0.93 6.54 -51.93 -0.34 0.59 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 1.41 5.78 -51.93 -0.30 1.11 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.07 1.00 7.22 -51.93 -0.37 0.62 16 47 H 0.07 0.78 7.30 -51.93 -0.38 0.40 16 48 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 350.60 15.07 5.28 5.28 Total: -1.00 -27.37 350.60 -8.57 -35.94 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -8.69 Total: 5.89 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -0.45 Total: -15.89 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.23 Total: -35.97 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.08 Total: -10.99 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -27.37 -8.57 -35.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457996803.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.178 kcal (2) G-P(sol) polarization free energy of solvation -27.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds