Wall clock time and date at job start Tue Mar 31 2020 05:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47398 * 2 1 4 4 C 1.50697 * 109.47299 * 120.00499 * 2 1 3 5 5 H 1.07991 * 120.00449 * 119.72229 * 4 2 1 6 6 C 1.37885 * 119.99686 * 300.00060 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48498 * 109.47416 * 59.99812 * 8 6 4 10 10 H 1.48508 * 109.46609 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46903 * 299.99397 * 8 6 4 12 12 C 1.53001 * 109.47159 * 240.00475 * 2 1 3 13 13 N 1.46498 * 109.47428 * 60.00186 * 12 2 1 14 14 C 1.34774 * 120.00211 * 180.02562 * 13 12 2 15 15 O 1.21281 * 119.99839 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00110 * 179.97438 * 14 13 12 17 17 H 1.09001 * 109.46880 * 60.00149 * 16 14 13 18 18 C 1.52999 * 109.47135 * 300.00023 * 16 14 13 19 19 C 1.53003 * 109.47062 * 179.97438 * 18 16 14 20 20 C 1.53003 * 109.46815 * 59.99951 * 19 18 16 21 21 C 1.52999 * 109.47345 * 299.99876 * 20 19 18 22 22 C 1.53001 * 109.46836 * 180.02562 * 21 20 19 23 23 C 1.53000 * 109.47052 * 300.00224 * 21 20 19 24 24 C 1.53003 * 109.47062 * 60.00275 * 21 20 19 25 25 H 1.08997 * 109.47084 * 300.00348 * 1 2 3 26 26 H 1.09007 * 109.46899 * 59.99996 * 1 2 3 27 27 H 1.08993 * 109.47037 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47109 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47204 * 300.00065 * 3 2 1 30 30 H 1.09006 * 109.46531 * 60.00060 * 3 2 1 31 31 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 32 32 H 1.08998 * 109.47065 * 180.02562 * 12 2 1 33 33 H 1.09006 * 109.46890 * 299.99671 * 12 2 1 34 34 H 0.97004 * 119.99747 * 359.97438 * 13 12 2 35 35 H 1.09001 * 109.47339 * 299.99844 * 18 16 14 36 36 H 1.08996 * 109.47277 * 59.99785 * 18 16 14 37 37 H 1.08993 * 109.47057 * 179.97438 * 19 18 16 38 38 H 1.09001 * 109.47095 * 300.00213 * 19 18 16 39 39 H 1.09001 * 109.47075 * 60.00250 * 20 19 18 40 40 H 1.09003 * 109.46771 * 179.97438 * 20 19 18 41 41 H 1.08994 * 109.47395 * 60.00163 * 22 21 20 42 42 H 1.09007 * 109.46593 * 180.02562 * 22 21 20 43 43 H 1.09006 * 109.47216 * 299.99672 * 22 21 20 44 44 H 1.08996 * 109.47041 * 59.99902 * 23 21 20 45 45 H 1.08998 * 109.46763 * 179.97438 * 23 21 20 46 46 H 1.08994 * 109.47083 * 299.99778 * 23 21 20 47 47 H 1.08993 * 109.47057 * 180.02562 * 24 21 20 48 48 H 1.09001 * 109.47095 * 59.99787 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6495 -1.5911 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9476 0.8330 2.6034 8 14 2.3156 -1.1246 4.0078 9 1 3.8006 -1.1311 4.0103 10 1 1.8211 -0.4242 5.2204 11 1 1.8144 -2.5225 4.0053 12 6 2.0400 -0.7212 -1.2493 13 7 1.5518 -0.0305 -2.4455 14 6 1.8769 -0.4911 -3.6696 15 8 2.5742 -1.4772 -3.7809 16 6 1.3742 0.2190 -4.9000 17 1 1.7376 1.2467 -4.9003 18 6 -0.1558 0.2190 -4.8995 19 6 -0.6662 0.9406 -6.1484 20 6 -0.1565 0.2196 -7.3980 21 6 1.3735 0.2196 -7.3985 22 6 1.8830 -0.5008 -8.6484 23 6 1.8834 1.6621 -7.3983 24 6 1.8839 -0.5020 -6.1496 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 0.7136 1.1645 3.4844 32 1 3.1300 -0.7215 -1.2491 33 1 1.6767 -1.7489 -1.2493 34 1 0.9938 0.7580 -2.3564 35 1 -0.5192 -0.8087 -4.8992 36 1 -0.5189 0.7329 -4.0095 37 1 -1.7561 0.9402 -6.1483 38 1 -0.3028 1.9682 -6.1483 39 1 -0.5199 -0.8081 -7.3981 40 1 -0.5205 0.7334 -8.2878 41 1 1.5194 0.0135 -9.5379 42 1 2.9731 -0.5012 -8.6485 43 1 1.5197 -1.5286 -8.6489 44 1 1.5204 2.1757 -6.5081 45 1 2.9734 1.6621 -7.3982 46 1 1.5198 2.1761 -8.2880 47 1 2.9738 -0.5016 -6.1497 48 1 1.5205 -1.5296 -6.1497 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457996871.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:19 Heat of formation + Delta-G solvation = -81.870455 kcal Electronic energy + Delta-G solvation = -23405.674530 eV Core-core repulsion = 20265.716157 eV Total energy + Delta-G solvation = -3139.958373 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.28188 -38.40421 -36.28846 -33.64591 -32.97838 -31.18743 -30.57216 -27.47808 -26.49977 -25.72360 -25.69919 -25.06487 -23.01600 -21.65870 -19.71532 -18.76816 -18.48429 -16.86873 -15.82766 -15.49816 -15.01626 -14.86756 -14.69209 -14.44230 -14.19697 -13.83460 -13.36473 -13.09778 -12.90466 -12.76009 -12.40618 -12.17760 -12.16362 -11.96873 -11.57869 -11.56178 -11.37135 -11.17670 -11.07203 -11.05136 -10.83197 -10.72846 -10.50735 -10.37514 -10.20896 -10.19455 -10.10287 -9.62412 -9.44979 -9.10449 -8.77953 -8.42617 -8.26739 -6.01542 -4.11598 3.12758 3.30411 3.34560 3.38153 3.79690 4.40429 4.52713 4.56690 4.64957 4.93688 5.04193 5.20014 5.23864 5.25065 5.28189 5.37939 5.45469 5.53684 5.57459 5.65004 5.72620 5.81607 5.88379 5.92306 5.93303 6.07745 6.12610 6.17215 6.22153 6.29389 6.34749 6.35827 6.44753 6.52436 6.80736 6.83117 6.95301 7.02818 7.08486 7.36726 7.56335 7.69864 8.01632 8.09882 8.19041 8.39666 8.77941 8.89428 9.54105 10.99801 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.037285 B = 0.003495 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.801252 B = 8009.539188 C = 8288.416866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.507 4.507 5 H 0.056 0.944 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.131 3.869 13 N -0.717 5.717 14 C 0.506 3.494 15 O -0.554 6.554 16 C -0.108 4.108 17 H 0.094 0.906 18 C -0.111 4.111 19 C -0.119 4.119 20 C -0.109 4.109 21 C -0.066 4.066 22 C -0.140 4.140 23 C -0.146 4.146 24 C -0.085 4.085 25 H 0.085 0.915 26 H 0.006 0.994 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.006 0.994 30 H 0.085 0.915 31 H 0.260 0.740 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.397 0.603 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.061 0.939 45 H 0.054 0.946 46 H 0.052 0.948 47 H 0.068 0.932 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.043 3.163 -18.629 19.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.056 3.944 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.009 3.991 13 N -0.367 5.367 14 C 0.292 3.708 15 O -0.433 6.433 16 C -0.129 4.129 17 H 0.112 0.888 18 C -0.148 4.148 19 C -0.157 4.157 20 C -0.146 4.146 21 C -0.067 4.067 22 C -0.197 4.197 23 C -0.203 4.203 24 C -0.123 4.123 25 H 0.103 0.897 26 H 0.025 0.975 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.025 0.975 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.232 0.768 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.086 0.914 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.621 2.567 -18.524 18.884 hybrid contribution 0.079 -0.085 1.000 1.006 sum -2.542 2.482 -17.525 17.881 Atomic orbital electron populations 1.21817 0.97788 0.99113 1.00014 1.18344 0.92761 0.92744 0.90598 1.21826 0.98555 0.98371 1.00046 1.20963 1.31655 1.11961 0.89955 0.92527 1.24879 0.94846 0.94934 0.98825 1.69795 1.36811 1.22588 1.23302 0.86635 0.79231 0.79819 0.82184 1.20275 1.21328 1.20287 1.21690 0.98054 0.95754 0.83628 1.46333 1.52549 1.31743 1.06081 1.20593 0.80533 0.84773 0.84903 1.90650 1.38795 1.26813 1.87063 1.21382 0.96939 1.00939 0.93682 0.88764 1.21522 0.93213 1.01660 0.98453 1.21574 1.00195 0.99636 0.94251 1.21610 0.94570 1.00770 0.97658 1.20570 0.95230 0.95651 0.95201 1.21843 1.01045 1.00162 0.96681 1.21989 1.00954 0.95602 1.01759 1.21365 1.00852 0.98966 0.91109 0.89659 0.97523 0.95499 0.95492 0.97536 0.89589 0.92967 0.92877 0.92886 0.76803 0.91433 0.91337 0.91805 0.91490 0.91950 0.92149 0.92853 0.92632 0.92681 0.91997 0.92723 0.92919 0.91368 0.91301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 4 C -0.51 -13.38 8.01 -34.44 -0.28 -13.65 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.67 9.35 55.43 0.52 -23.15 16 8 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 C 0.13 2.83 4.50 -4.04 -0.02 2.82 16 13 N -0.72 -12.85 4.85 -60.29 -0.29 -13.14 16 14 C 0.51 8.81 7.15 -10.99 -0.08 8.73 16 15 O -0.55 -11.74 15.98 5.56 0.09 -11.65 16 16 C -0.11 -1.38 2.25 -91.77 -0.21 -1.58 16 17 H 0.09 1.09 6.43 -51.93 -0.33 0.76 16 18 C -0.11 -1.23 5.10 -26.73 -0.14 -1.37 16 19 C -0.12 -1.07 5.65 -26.73 -0.15 -1.22 16 20 C -0.11 -0.95 4.73 -26.73 -0.13 -1.08 16 21 C -0.07 -0.62 0.77 -154.51 -0.12 -0.74 16 22 C -0.14 -1.20 8.47 37.16 0.31 -0.89 16 23 C -0.15 -1.27 7.78 37.16 0.29 -0.98 16 24 C -0.09 -1.04 3.30 -26.73 -0.09 -1.12 16 25 H 0.08 2.12 6.08 -51.93 -0.32 1.81 16 26 H 0.01 0.12 6.86 -51.92 -0.36 -0.24 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 30 H 0.09 2.15 6.06 -51.93 -0.31 1.83 16 31 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.40 6.44 5.58 -40.82 -0.23 6.21 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.76 7.56 -51.93 -0.39 0.36 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.56 6.43 -51.93 -0.33 0.23 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.54 4.81 -51.93 -0.25 0.29 16 45 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 48 H 0.07 0.93 8.10 -51.93 -0.42 0.50 16 LS Contribution 355.35 15.07 5.36 5.36 Total: -1.00 -28.12 355.35 -8.28 -36.40 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -8.76 Total: 3.86 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -0.17 Total: -13.47 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.23 Total: -36.29 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.12 -8.28 -36.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457996871.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.475 kcal (2) G-P(sol) polarization free energy of solvation -28.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds