Wall clock time and date at job start Tue Mar 31 2020 05:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47398 * 2 1 4 4 C 1.50697 * 109.47299 * 120.00499 * 2 1 3 5 5 H 1.07991 * 120.00449 * 119.72229 * 4 2 1 6 6 C 1.37885 * 119.99686 * 300.00060 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48498 * 109.47416 * 59.99812 * 8 6 4 10 10 H 1.48508 * 109.46609 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46903 * 299.99397 * 8 6 4 12 12 C 1.53001 * 109.47159 * 240.00475 * 2 1 3 13 13 N 1.46498 * 109.47428 * 60.00186 * 12 2 1 14 14 C 1.34774 * 120.00211 * 180.02562 * 13 12 2 15 15 O 1.21281 * 119.99839 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00110 * 179.97438 * 14 13 12 17 17 H 1.09001 * 109.46880 * 60.00149 * 16 14 13 18 18 C 1.52999 * 109.47135 * 300.00023 * 16 14 13 19 19 C 1.53003 * 109.47062 * 179.97438 * 18 16 14 20 20 C 1.53003 * 109.46815 * 59.99951 * 19 18 16 21 21 C 1.52999 * 109.47345 * 299.99876 * 20 19 18 22 22 C 1.53001 * 109.46836 * 180.02562 * 21 20 19 23 23 C 1.53000 * 109.47052 * 300.00224 * 21 20 19 24 24 C 1.53003 * 109.47062 * 60.00275 * 21 20 19 25 25 H 1.08997 * 109.47084 * 300.00348 * 1 2 3 26 26 H 1.09007 * 109.46899 * 59.99996 * 1 2 3 27 27 H 1.08993 * 109.47037 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47109 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47204 * 300.00065 * 3 2 1 30 30 H 1.09006 * 109.46531 * 60.00060 * 3 2 1 31 31 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 32 32 H 1.08998 * 109.47065 * 180.02562 * 12 2 1 33 33 H 1.09006 * 109.46890 * 299.99671 * 12 2 1 34 34 H 0.97004 * 119.99747 * 359.97438 * 13 12 2 35 35 H 1.09001 * 109.47339 * 299.99844 * 18 16 14 36 36 H 1.08996 * 109.47277 * 59.99785 * 18 16 14 37 37 H 1.08993 * 109.47057 * 179.97438 * 19 18 16 38 38 H 1.09001 * 109.47095 * 300.00213 * 19 18 16 39 39 H 1.09001 * 109.47075 * 60.00250 * 20 19 18 40 40 H 1.09003 * 109.46771 * 179.97438 * 20 19 18 41 41 H 1.08994 * 109.47395 * 60.00163 * 22 21 20 42 42 H 1.09007 * 109.46593 * 180.02562 * 22 21 20 43 43 H 1.09006 * 109.47216 * 299.99672 * 22 21 20 44 44 H 1.08996 * 109.47041 * 59.99902 * 23 21 20 45 45 H 1.08998 * 109.46763 * 179.97438 * 23 21 20 46 46 H 1.08994 * 109.47083 * 299.99778 * 23 21 20 47 47 H 1.08993 * 109.47057 * 180.02562 * 24 21 20 48 48 H 1.09001 * 109.47095 * 59.99787 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6495 -1.5911 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9476 0.8330 2.6034 8 14 2.3156 -1.1246 4.0078 9 1 3.8006 -1.1311 4.0103 10 1 1.8211 -0.4242 5.2204 11 1 1.8144 -2.5225 4.0053 12 6 2.0400 -0.7212 -1.2493 13 7 1.5518 -0.0305 -2.4455 14 6 1.8769 -0.4911 -3.6696 15 8 2.5742 -1.4772 -3.7809 16 6 1.3742 0.2190 -4.9000 17 1 1.7376 1.2467 -4.9003 18 6 -0.1558 0.2190 -4.8995 19 6 -0.6662 0.9406 -6.1484 20 6 -0.1565 0.2196 -7.3980 21 6 1.3735 0.2196 -7.3985 22 6 1.8830 -0.5008 -8.6484 23 6 1.8834 1.6621 -7.3983 24 6 1.8839 -0.5020 -6.1496 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 0.7136 1.1645 3.4844 32 1 3.1300 -0.7215 -1.2491 33 1 1.6767 -1.7489 -1.2493 34 1 0.9938 0.7580 -2.3564 35 1 -0.5192 -0.8087 -4.8992 36 1 -0.5189 0.7329 -4.0095 37 1 -1.7561 0.9402 -6.1483 38 1 -0.3028 1.9682 -6.1483 39 1 -0.5199 -0.8081 -7.3981 40 1 -0.5205 0.7334 -8.2878 41 1 1.5194 0.0135 -9.5379 42 1 2.9731 -0.5012 -8.6485 43 1 1.5197 -1.5286 -8.6489 44 1 1.5204 2.1757 -6.5081 45 1 2.9734 1.6621 -7.3982 46 1 1.5198 2.1761 -8.2880 47 1 2.9738 -0.5016 -6.1497 48 1 1.5205 -1.5296 -6.1497 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457996871.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:18 Heat of formation + Delta-G solvation = -96.148889 kcal Electronic energy + Delta-G solvation = -23406.293690 eV Core-core repulsion = 20265.716157 eV Total energy + Delta-G solvation = -3140.577533 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.43579 -39.62147 -38.04472 -35.09075 -34.20612 -32.66990 -31.82701 -28.14610 -27.63695 -27.57165 -27.25356 -26.77581 -24.22436 -22.50164 -21.09186 -20.60111 -19.32022 -18.28161 -17.64952 -16.81080 -16.56377 -16.40491 -15.65076 -15.53687 -15.34700 -14.88120 -14.79798 -14.58023 -14.22143 -13.95571 -13.90583 -13.46506 -13.18515 -13.09318 -12.88471 -12.75287 -12.67490 -12.64150 -12.40852 -12.29607 -12.25727 -12.13612 -11.91924 -11.84308 -11.49261 -11.37505 -11.27426 -11.01940 -10.89653 -10.74804 -10.51734 -10.40268 -9.92072 -8.03114 -6.19021 1.43249 1.44289 1.51036 1.71713 2.33900 2.50637 3.20236 3.65249 3.70525 3.76276 4.10215 4.16377 4.29716 4.36200 4.45508 4.46556 4.49978 4.53825 4.61000 4.71071 4.76200 4.85352 4.90543 4.99085 5.02574 5.05008 5.10742 5.11449 5.13155 5.17756 5.18950 5.23709 5.24719 5.30209 5.36872 5.41872 5.48032 5.53424 5.60984 5.66072 5.66521 5.69612 6.14515 6.20890 6.42852 6.70146 6.84803 7.35552 7.48608 8.95562 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.037285 B = 0.003495 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.801252 B = 8009.539188 C = 8288.416866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.052 3.948 3 C -0.120 4.120 4 C -0.532 4.532 5 H 0.042 0.958 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.278 1.278 12 C 0.147 3.853 13 N -0.710 5.710 14 C 0.503 3.497 15 O -0.596 6.596 16 C -0.097 4.097 17 H 0.115 0.885 18 C -0.109 4.109 19 C -0.114 4.114 20 C -0.108 4.108 21 C -0.062 4.062 22 C -0.140 4.140 23 C -0.146 4.146 24 C -0.083 4.083 25 H 0.063 0.937 26 H 0.038 0.962 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.037 0.963 30 H 0.063 0.937 31 H 0.261 0.739 32 H 0.035 0.965 33 H 0.034 0.966 34 H 0.408 0.592 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.055 0.945 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.050 0.950 43 H 0.049 0.951 44 H 0.064 0.936 45 H 0.049 0.951 46 H 0.068 0.932 47 H 0.051 0.949 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.067 4.643 -20.184 21.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.051 3.949 3 C -0.178 4.178 4 C -0.571 4.571 5 H 0.061 0.939 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.023 3.977 13 N -0.361 5.361 14 C 0.291 3.709 15 O -0.477 6.477 16 C -0.118 4.118 17 H 0.133 0.867 18 C -0.147 4.147 19 C -0.151 4.151 20 C -0.145 4.145 21 C -0.062 4.062 22 C -0.197 4.197 23 C -0.203 4.203 24 C -0.121 4.121 25 H 0.081 0.919 26 H 0.057 0.943 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.245 0.755 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.068 0.932 46 H 0.087 0.913 47 H 0.069 0.931 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.663 4.070 -20.091 20.824 hybrid contribution 0.424 -0.584 1.467 1.635 sum -3.239 3.486 -18.624 19.222 Atomic orbital electron populations 1.21653 0.97016 0.98569 1.00434 1.18345 0.93306 0.93037 0.90182 1.21666 0.97836 0.97807 1.00462 1.21259 1.32036 1.12082 0.91726 0.93936 1.25442 0.95086 0.95607 1.00904 1.69895 1.37012 1.23051 1.23701 0.85831 0.78617 0.78832 0.79612 1.20293 1.20659 1.20315 1.21243 0.96807 0.95001 0.84642 1.46169 1.52689 1.31884 1.05333 1.21487 0.79401 0.84230 0.85767 1.90632 1.40617 1.28843 1.87636 1.21403 0.98235 1.01118 0.91050 0.86731 1.21544 0.91518 1.01459 1.00188 1.21566 1.00965 0.99825 0.92762 1.21617 0.93689 1.00739 0.98455 1.20545 0.95913 0.95946 0.93792 1.21843 1.00817 1.00077 0.96974 1.21991 1.00721 0.94872 1.02674 1.21347 0.99805 0.98406 0.92533 0.91853 0.94340 0.96479 0.96460 0.94373 0.91775 0.92963 0.94702 0.94746 0.75453 0.92737 0.90851 0.90503 0.90203 0.92611 0.90255 0.91166 0.93079 0.93162 0.91761 0.93226 0.91288 0.93058 0.93240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.29 8.08 71.98 0.58 -4.71 16 2 C 0.05 2.42 0.50 -52.93 -0.03 2.40 16 3 C -0.12 -5.34 8.08 71.98 0.58 -4.76 16 4 C -0.53 -28.55 8.01 25.60 0.21 -28.35 16 5 H 0.04 2.33 7.74 -2.92 -0.02 2.31 16 6 C 0.03 1.57 5.15 84.66 0.44 2.00 16 7 N -0.90 -47.94 9.35 21.45 0.20 -47.74 16 8 Si 0.94 42.86 29.54 68.60 2.03 44.88 16 9 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 C 0.15 6.43 4.50 86.38 0.39 6.82 16 13 N -0.71 -24.88 4.85 -463.06 -2.25 -27.12 16 14 C 0.50 17.35 7.15 87.66 0.63 17.98 16 15 O -0.60 -25.81 15.98 -3.03 -0.05 -25.86 16 16 C -0.10 -2.33 2.25 -11.54 -0.03 -2.36 16 17 H 0.11 2.34 6.43 -2.39 -0.02 2.33 16 18 C -0.11 -2.19 5.10 30.60 0.16 -2.03 16 19 C -0.11 -1.65 5.65 30.60 0.17 -1.48 16 20 C -0.11 -1.56 4.73 30.60 0.14 -1.42 16 21 C -0.06 -1.03 0.77 -52.18 -0.04 -1.07 16 22 C -0.14 -2.16 8.47 71.98 0.61 -1.55 16 23 C -0.15 -2.10 7.78 71.98 0.56 -1.54 16 24 C -0.08 -1.97 3.30 30.60 0.10 -1.87 16 25 H 0.06 3.12 6.08 -2.39 -0.01 3.11 16 26 H 0.04 1.42 6.86 -2.38 -0.02 1.40 16 27 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 30 H 0.06 3.17 6.06 -2.38 -0.01 3.15 16 31 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 32 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.03 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.41 12.35 5.58 -92.71 -0.52 11.83 16 35 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 1.41 7.56 -2.39 -0.02 1.39 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.08 1.00 6.43 -2.39 -0.02 0.98 16 39 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 44 H 0.06 0.89 4.81 -2.39 -0.01 0.88 16 45 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.05 1.37 8.10 -2.39 -0.02 1.35 16 48 H 0.05 1.35 8.10 -2.39 -0.02 1.33 16 Total: -1.00 -61.24 355.35 4.80 -56.44 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.40 Total: 21.33 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: 4.47 Total: -21.94 kcal Atomic # 7 Polarization: -72.81 SS G_CDS: -2.05 Total: -74.86 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.05 Total: -25.86 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -61.24 4.80 -56.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457996871.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.706 kcal (2) G-P(sol) polarization free energy of solvation -61.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds