Wall clock time and date at job start Tue Mar 31 2020 05:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46815 * 2 1 4 4 C 1.50697 * 109.46971 * 240.00039 * 2 1 3 5 5 H 1.07998 * 119.99922 * 241.34113 * 4 2 1 6 6 C 1.37877 * 120.00239 * 61.34677 * 4 2 1 7 7 N 1.31518 * 120.00106 * 193.97442 * 6 4 2 8 8 Si 1.86803 * 120.00083 * 13.97376 * 6 4 2 9 9 H 1.48497 * 109.46830 * 84.54772 * 8 6 4 10 10 H 1.48495 * 109.47312 * 204.54874 * 8 6 4 11 11 H 1.48502 * 109.46952 * 324.55060 * 8 6 4 12 12 C 1.52998 * 109.47241 * 119.99639 * 2 1 3 13 13 N 1.46499 * 109.47402 * 300.00371 * 12 2 1 14 14 C 1.34773 * 120.00082 * 179.97438 * 13 12 2 15 15 O 1.21284 * 120.00080 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99846 * 179.97438 * 14 13 12 17 17 H 1.09002 * 109.47093 * 300.00196 * 16 14 13 18 18 C 1.53004 * 109.47190 * 60.00284 * 16 14 13 19 19 C 1.52995 * 109.47006 * 180.02562 * 18 16 14 20 20 C 1.53008 * 109.46862 * 299.99606 * 19 18 16 21 21 C 1.52996 * 109.46870 * 60.00556 * 20 19 18 22 22 C 1.53008 * 109.46870 * 180.02562 * 21 20 19 23 23 C 1.53000 * 109.47315 * 59.99887 * 21 20 19 24 24 C 1.53000 * 109.47398 * 299.99544 * 21 20 19 25 25 H 1.09001 * 109.47311 * 309.36844 * 1 2 3 26 26 H 1.08995 * 109.47377 * 69.37065 * 1 2 3 27 27 H 1.09008 * 109.46866 * 189.37044 * 1 2 3 28 28 H 1.09000 * 109.47156 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46999 * 300.00050 * 3 2 1 30 30 H 1.08994 * 109.47257 * 60.00017 * 3 2 1 31 31 H 0.96998 * 120.00131 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.46753 * 180.02562 * 12 2 1 33 33 H 1.09002 * 109.47112 * 60.00236 * 12 2 1 34 34 H 0.97001 * 119.99624 * 359.97438 * 13 12 2 35 35 H 1.08996 * 109.46771 * 300.00083 * 18 16 14 36 36 H 1.08993 * 109.47053 * 59.99799 * 18 16 14 37 37 H 1.08996 * 109.47890 * 59.99674 * 19 18 16 38 38 H 1.09000 * 109.47209 * 180.02562 * 19 18 16 39 39 H 1.09007 * 109.46799 * 180.02562 * 20 19 18 40 40 H 1.08991 * 109.47082 * 299.99947 * 20 19 18 41 41 H 1.09001 * 109.47107 * 180.02562 * 22 21 20 42 42 H 1.09007 * 109.46799 * 299.99756 * 22 21 20 43 43 H 1.08993 * 109.47362 * 59.99845 * 22 21 20 44 44 H 1.08996 * 109.46982 * 299.99458 * 23 21 20 45 45 H 1.09002 * 109.47261 * 60.00153 * 23 21 20 46 46 H 1.09009 * 109.47018 * 179.97438 * 23 21 20 47 47 H 1.09000 * 109.46686 * 300.00838 * 24 21 20 48 48 H 1.08995 * 109.47253 * 180.02562 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6352 -1.6009 -1.1315 6 6 1.7223 -0.2234 -2.4825 7 7 1.9157 -0.9726 -3.5460 8 14 1.0274 1.5006 -2.6685 9 1 2.1415 2.4816 -2.7084 10 1 0.2469 1.5865 -3.9288 11 1 0.1416 1.8042 -1.5159 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8769 -0.4913 3.6695 15 8 2.5742 -1.4773 3.7808 16 6 1.3749 0.2195 4.8999 17 1 1.7390 1.2469 4.9000 18 6 -0.1551 0.2205 4.8999 19 6 -0.6646 0.9426 6.1488 20 6 -0.1551 0.2215 7.3984 21 6 1.3748 0.2205 7.3984 22 6 1.8843 -0.5012 8.6477 23 6 1.8858 1.6626 7.3979 24 6 1.8845 -0.5016 6.1495 25 1 -0.3634 0.6519 0.7945 26 1 -0.3634 0.3620 -0.9617 27 1 -0.3633 -1.0140 0.1673 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6973 -0.6301 -4.4268 32 1 3.1300 -0.7207 1.2494 33 1 1.6767 -1.7489 1.2493 34 1 0.9942 0.7583 2.3564 35 1 -0.5180 0.7345 4.0099 36 1 -0.5191 -0.8069 4.8999 37 1 -0.3006 1.9700 6.1484 38 1 -1.7546 0.9430 6.1490 39 1 -0.5185 0.7357 8.2882 40 1 -0.5192 -0.8058 7.3988 41 1 2.9743 -0.5015 8.6480 42 1 1.5212 0.0129 9.5377 43 1 1.5203 -1.5286 8.6476 44 1 1.5229 2.1763 6.5077 45 1 1.5228 2.1771 8.2877 46 1 2.9759 1.6619 7.3984 47 1 1.5203 -1.5290 6.1499 48 1 2.9744 -0.5027 6.1498 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457996872.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:21 Heat of formation + Delta-G solvation = -61.741623 kcal Electronic energy + Delta-G solvation = -23503.528342 eV Core-core repulsion = 20364.442820 eV Total energy + Delta-G solvation = -3139.085522 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.37870 -38.54794 -36.65283 -33.73085 -33.00504 -31.51045 -30.99968 -27.53380 -26.65088 -26.40976 -26.00298 -24.95836 -23.16593 -21.73456 -19.80299 -19.13301 -18.55775 -16.88778 -16.11622 -15.64242 -15.31094 -14.98863 -14.81304 -14.65059 -14.31628 -13.95626 -13.55484 -13.22278 -13.04370 -12.85891 -12.71082 -12.44493 -12.27051 -12.20238 -12.05588 -12.02865 -11.64224 -11.62625 -11.31869 -11.12375 -11.10018 -10.57636 -10.44429 -10.33222 -10.26851 -10.17836 -10.15456 -10.07072 -9.35850 -9.08971 -8.69074 -8.51826 -8.42633 -6.15303 -4.12542 3.01584 3.23122 3.30085 3.37806 3.65993 4.34776 4.45818 4.49588 4.56972 4.86426 4.96592 5.12440 5.15258 5.16445 5.19385 5.30799 5.37420 5.47834 5.51171 5.57839 5.66132 5.75614 5.78591 5.82134 5.85757 5.87633 5.99889 6.04559 6.05673 6.06458 6.12352 6.16933 6.29224 6.35212 6.37997 6.48415 6.52651 6.62943 6.69114 6.81078 6.98097 7.22081 7.42621 7.71945 7.98390 8.44590 8.65882 8.90319 9.48596 10.97864 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.034082 B = 0.003774 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.352043 B = 7417.073521 C = 7711.941121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.028 3.972 3 C -0.147 4.147 4 C -0.513 4.513 5 H 0.076 0.924 6 C 0.075 3.925 7 N -0.891 5.891 8 Si 0.886 3.114 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.249 1.249 12 C 0.142 3.858 13 N -0.722 5.722 14 C 0.508 3.492 15 O -0.549 6.549 16 C -0.108 4.108 17 H 0.095 0.905 18 C -0.111 4.111 19 C -0.119 4.119 20 C -0.109 4.109 21 C -0.066 4.066 22 C -0.140 4.140 23 C -0.146 4.146 24 C -0.085 4.085 25 H 0.021 0.979 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.041 0.959 30 H 0.029 0.971 31 H 0.265 0.735 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.395 0.605 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.052 0.948 46 H 0.054 0.946 47 H 0.069 0.931 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.987 6.821 21.789 23.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.027 3.973 3 C -0.204 4.204 4 C -0.551 4.551 5 H 0.094 0.906 6 C -0.127 4.127 7 N -0.528 5.528 8 Si 0.718 3.282 9 H -0.214 1.214 10 H -0.234 1.234 11 H -0.175 1.175 12 C 0.019 3.981 13 N -0.373 5.373 14 C 0.294 3.706 15 O -0.427 6.427 16 C -0.130 4.130 17 H 0.113 0.887 18 C -0.149 4.149 19 C -0.157 4.157 20 C -0.146 4.146 21 C -0.066 4.066 22 C -0.198 4.198 23 C -0.203 4.203 24 C -0.123 4.123 25 H 0.040 0.960 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.230 0.770 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.484 6.067 21.637 22.914 hybrid contribution -0.537 1.356 -0.474 1.534 sum -5.020 7.423 21.163 22.982 Atomic orbital electron populations 1.22285 0.97858 0.99796 0.99899 1.18715 0.92494 0.92230 0.93846 1.22354 1.01182 0.98345 0.98521 1.20729 1.34041 1.12318 0.88026 0.90575 1.24978 0.94680 0.97304 0.95783 1.69953 1.48206 1.35918 0.98727 0.87292 0.79334 0.85565 0.75981 1.21368 1.23397 1.17521 1.21487 0.98521 0.95800 0.82289 1.46335 1.52939 1.31819 1.06234 1.20589 0.80477 0.84770 0.84787 1.90672 1.38434 1.26611 1.86980 1.21394 0.96960 1.00951 0.93673 0.88725 1.21524 0.93186 1.01728 0.98416 1.21573 1.00209 0.99608 0.94266 1.21613 0.94583 1.00808 0.97642 1.20570 0.95211 0.95635 0.95225 1.21845 1.01076 1.00181 0.96657 1.21992 1.00979 0.95602 1.01735 1.21372 1.00915 0.98995 0.91051 0.95982 0.92559 0.93437 0.92821 0.94060 0.95207 0.92559 0.92125 0.92007 0.77015 0.91446 0.91335 0.91515 0.91797 0.92114 0.91898 0.92601 0.92842 0.92633 0.92051 0.92901 0.92695 0.91234 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 7.53 37.16 0.28 -2.58 16 2 C 0.03 0.62 0.50 -155.66 -0.08 0.54 16 3 C -0.15 -2.98 7.52 37.16 0.28 -2.70 16 4 C -0.51 -13.84 8.62 -34.44 -0.30 -14.14 16 5 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 6 C 0.08 2.09 5.32 -17.82 -0.09 2.00 16 7 N -0.89 -26.72 13.96 55.43 0.77 -25.94 16 8 Si 0.89 21.07 22.79 -169.99 -3.87 17.20 16 9 H -0.29 -6.78 7.10 56.52 0.40 -6.38 16 10 H -0.31 -7.43 7.11 56.52 0.40 -7.03 16 11 H -0.25 -5.37 4.65 56.52 0.26 -5.11 16 12 C 0.14 2.86 4.49 -4.04 -0.02 2.84 16 13 N -0.72 -11.82 4.90 -60.29 -0.30 -12.12 16 14 C 0.51 8.23 7.15 -10.99 -0.08 8.15 16 15 O -0.55 -11.08 15.98 5.55 0.09 -11.00 16 16 C -0.11 -1.27 2.25 -91.77 -0.21 -1.48 16 17 H 0.09 0.99 6.43 -51.93 -0.33 0.66 16 18 C -0.11 -1.12 5.10 -26.73 -0.14 -1.25 16 19 C -0.12 -0.97 5.65 -26.73 -0.15 -1.12 16 20 C -0.11 -0.88 4.73 -26.73 -0.13 -1.01 16 21 C -0.07 -0.58 0.77 -154.51 -0.12 -0.70 16 22 C -0.14 -1.14 8.47 37.16 0.31 -0.82 16 23 C -0.15 -1.18 7.78 37.16 0.29 -0.89 16 24 C -0.09 -0.98 3.30 -26.73 -0.09 -1.06 16 25 H 0.02 0.37 7.13 -51.93 -0.37 0.00 16 26 H 0.06 1.22 4.30 -51.93 -0.22 0.99 16 27 H 0.05 0.96 8.12 -51.92 -0.42 0.53 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.04 0.88 2.25 -51.93 -0.12 0.77 16 30 H 0.03 0.49 6.86 -51.93 -0.36 0.14 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.40 5.62 5.68 -40.82 -0.23 5.38 16 35 H 0.07 0.66 7.56 -51.93 -0.39 0.26 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.51 6.43 -51.93 -0.33 0.17 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.49 4.81 -51.93 -0.25 0.24 16 45 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 47 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 48 H 0.07 0.87 8.10 -51.93 -0.42 0.44 16 LS Contribution 345.45 15.07 5.21 5.21 Total: -1.00 -30.42 345.45 -6.97 -37.39 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -8.64 Total: 3.49 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -0.23 Total: -14.22 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.48 Total: -38.06 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -3.87 Total: 17.20 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.42 -6.97 -37.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457996872.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.352 kcal (2) G-P(sol) polarization free energy of solvation -30.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds