Wall clock time and date at job start Tue Mar 31 2020 05:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47071 * 2 1 4 4 C 1.50698 * 109.46919 * 239.99999 * 2 1 3 5 5 H 1.08001 * 119.99818 * 237.00600 * 4 2 1 6 6 C 1.37880 * 120.00187 * 57.00864 * 4 2 1 7 7 N 1.31520 * 119.99620 * 5.53800 * 6 4 2 8 8 Si 1.86793 * 120.00110 * 185.54411 * 6 4 2 9 9 H 1.48504 * 109.47365 * 84.99703 * 8 6 4 10 10 H 1.48499 * 109.47061 * 204.99984 * 8 6 4 11 11 H 1.48503 * 109.47005 * 324.99462 * 8 6 4 12 12 C 1.52996 * 109.47016 * 120.00209 * 2 1 3 13 13 N 1.46505 * 109.47219 * 299.99659 * 12 2 1 14 14 C 1.34776 * 119.99975 * 180.02562 * 13 12 2 15 15 O 1.21279 * 120.00350 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99861 * 180.02562 * 14 13 12 17 17 C 1.52999 * 109.47464 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47461 * 179.97438 * 17 16 14 19 19 C 1.52996 * 109.46996 * 300.00430 * 18 17 16 20 20 C 1.53001 * 109.46996 * 180.02562 * 19 18 17 21 21 C 1.53007 * 109.47280 * 299.99649 * 19 18 17 22 22 C 1.52996 * 109.47519 * 59.99858 * 19 18 17 23 23 C 1.52999 * 109.47249 * 300.00243 * 16 14 13 24 24 H 1.09000 * 109.46506 * 293.93342 * 1 2 3 25 25 H 1.08998 * 109.46860 * 53.92704 * 1 2 3 26 26 H 1.08996 * 109.46912 * 173.93289 * 1 2 3 27 27 H 1.08999 * 109.46717 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.46979 * 300.00085 * 3 2 1 29 29 H 1.09002 * 109.47330 * 60.00512 * 3 2 1 30 30 H 0.96998 * 119.99566 * 180.02562 * 7 6 4 31 31 H 1.09002 * 109.47138 * 180.02562 * 12 2 1 32 32 H 1.08997 * 109.47358 * 59.99841 * 12 2 1 33 33 H 0.97002 * 119.99764 * 0.02562 * 13 12 2 34 34 H 1.08999 * 109.47227 * 59.99889 * 16 14 13 35 35 H 1.09006 * 109.46699 * 60.00149 * 17 16 14 36 36 H 1.08997 * 109.47206 * 300.00291 * 17 16 14 37 37 H 1.08996 * 109.47222 * 180.02562 * 18 17 16 38 38 H 1.08994 * 109.46652 * 60.00121 * 18 17 16 39 39 H 1.09006 * 109.47080 * 60.00041 * 20 19 18 40 40 H 1.08997 * 109.47249 * 179.97438 * 20 19 18 41 41 H 1.08999 * 109.47127 * 299.99685 * 20 19 18 42 42 H 1.09002 * 109.46626 * 60.00390 * 21 19 18 43 43 H 1.08997 * 109.47187 * 180.02562 * 21 19 18 44 44 H 1.08997 * 109.46861 * 300.00528 * 21 19 18 45 45 H 1.08999 * 109.47062 * 60.00034 * 22 19 18 46 46 H 1.08997 * 109.47358 * 179.97438 * 22 19 18 47 47 H 1.09006 * 109.47060 * 299.99940 * 23 16 14 48 48 H 1.08997 * 109.47457 * 59.99653 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6925 -1.5595 -1.1321 6 6 1.6491 -0.2764 -2.4818 7 7 0.9350 0.8209 -2.6071 8 14 2.1440 -1.2471 -3.9991 9 1 1.1617 -2.3362 -4.2322 10 1 2.1707 -0.3439 -5.1775 11 1 3.4931 -1.8328 -3.7938 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8778 -0.4909 3.6695 15 8 2.5750 -1.4770 3.7808 16 6 1.3750 0.2192 4.9000 17 6 1.8850 -0.5020 6.1492 18 6 1.3751 0.2193 7.3985 19 6 1.8851 1.6618 7.3983 20 6 1.3757 2.3829 8.6479 21 6 3.4151 1.6619 7.3983 22 6 1.3750 2.3830 6.1491 23 6 1.8839 1.6621 4.8999 24 1 -0.3632 0.4169 0.9393 25 1 -0.3633 0.6051 -0.8306 26 1 -0.3633 -1.0219 -0.1086 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 0.6651 1.1260 -3.4874 31 1 3.1300 -0.7209 1.2494 32 1 1.6767 -1.7489 1.2492 33 1 0.9938 0.7578 2.3564 34 1 0.2850 0.2184 4.9000 35 1 2.9751 -0.5015 6.1494 36 1 1.5221 -1.5297 6.1491 37 1 1.7389 -0.2942 8.2884 38 1 0.2852 0.2193 7.3985 39 1 1.7396 1.8690 9.5377 40 1 1.7393 3.4104 8.6481 41 1 0.2857 2.3829 8.6485 42 1 3.7784 1.1480 6.5082 43 1 3.7784 2.6896 7.3986 44 1 3.7785 1.1481 8.2882 45 1 0.2850 2.3830 6.1492 46 1 1.7379 3.4108 6.1493 47 1 2.9740 1.6629 4.8998 48 1 1.5202 2.1756 4.0099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457997526.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:38 Heat of formation + Delta-G solvation = -81.783458 kcal Electronic energy + Delta-G solvation = -23346.158708 eV Core-core repulsion = 20206.204107 eV Total energy + Delta-G solvation = -3139.954601 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.25249 -38.48053 -36.31956 -33.49906 -33.05297 -31.01971 -30.60968 -27.49453 -27.21335 -25.72724 -25.49465 -24.68354 -22.73907 -21.91155 -19.73578 -18.78466 -18.48699 -16.95684 -15.82850 -15.49013 -15.04173 -14.93955 -14.71839 -14.47923 -14.11360 -13.68056 -13.37637 -13.12753 -12.89437 -12.47120 -12.41853 -12.35413 -12.15474 -12.01155 -11.83199 -11.51608 -11.39038 -11.18297 -11.06989 -11.01977 -10.85023 -10.69142 -10.49481 -10.37250 -10.25736 -10.20303 -10.03283 -9.61894 -9.45459 -9.11543 -8.77954 -8.42572 -8.26596 -6.02331 -4.11025 3.12363 3.29109 3.35502 3.39011 3.80630 4.40715 4.48560 4.56587 4.63363 4.93949 5.01401 5.19297 5.24807 5.27354 5.29649 5.43953 5.45133 5.50837 5.52699 5.66886 5.74245 5.78605 5.81326 5.93200 5.97050 6.01493 6.11729 6.17880 6.21744 6.27588 6.34376 6.35765 6.49103 6.52802 6.80948 6.82379 6.94609 7.02518 7.08103 7.36434 7.56244 7.70429 7.99956 8.09333 8.18484 8.39239 8.77602 8.89816 9.54365 10.99695 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.037959 B = 0.003427 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.462187 B = 8167.371285 C = 8446.803404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.508 4.508 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.892 3.108 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.131 3.869 13 N -0.717 5.717 14 C 0.506 3.494 15 O -0.554 6.554 16 C -0.106 4.106 17 C -0.099 4.099 18 C -0.107 4.107 19 C -0.067 4.067 20 C -0.140 4.140 21 C -0.147 4.147 22 C -0.106 4.106 23 C -0.113 4.113 24 H 0.006 0.994 25 H 0.081 0.919 26 H 0.029 0.971 27 H 0.026 0.974 28 H 0.085 0.915 29 H 0.005 0.995 30 H 0.260 0.740 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.397 0.603 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.071 0.929 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.136 4.915 18.664 19.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.546 4.546 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.720 3.280 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.200 1.200 12 C 0.009 3.991 13 N -0.367 5.367 14 C 0.292 3.708 15 O -0.433 6.433 16 C -0.127 4.127 17 C -0.137 4.137 18 C -0.145 4.145 19 C -0.067 4.067 20 C -0.198 4.198 21 C -0.204 4.204 22 C -0.143 4.143 23 C -0.151 4.151 24 H 0.025 0.975 25 H 0.100 0.900 26 H 0.048 0.952 27 H 0.045 0.955 28 H 0.104 0.896 29 H 0.024 0.976 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.232 0.768 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.089 0.911 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.714 4.322 18.562 19.072 hybrid contribution -0.077 -0.142 -1.002 1.015 sum -0.790 4.180 17.560 18.068 Atomic orbital electron populations 1.21801 0.97773 1.00113 0.98932 1.18347 0.92729 0.92746 0.90643 1.21837 0.98555 0.98336 0.99967 1.20983 1.29336 1.14330 0.89992 0.92472 1.24876 0.94992 0.94770 0.98789 1.69829 1.37872 1.21407 1.23268 0.86601 0.79048 0.79925 0.82382 1.20630 1.21335 1.19970 1.21680 0.98037 0.95775 0.83619 1.46348 1.52558 1.31725 1.06095 1.20593 0.80656 0.84649 0.84910 1.90649 1.38720 1.26890 1.87064 1.21331 1.01671 0.95978 0.93736 1.21358 1.01759 0.98689 0.91910 1.21619 1.00429 0.94569 0.97882 1.20562 0.95819 0.95350 0.94988 1.21861 1.00841 1.00044 0.97033 1.21989 0.94665 1.01556 1.02150 1.21573 1.00590 0.98692 0.93447 1.21563 1.01717 0.93445 0.98354 0.97481 0.90036 0.95229 0.95506 0.89631 0.97585 0.93026 0.92882 0.92854 0.76782 0.89065 0.90956 0.91441 0.91898 0.92024 0.92828 0.92794 0.92767 0.91713 0.92921 0.92930 0.91798 0.91730 0.91081 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.03 37.16 0.30 -2.60 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -2.91 8.11 37.16 0.30 -2.61 16 4 C -0.51 -13.40 8.01 -34.44 -0.28 -13.68 16 5 H 0.06 1.53 7.75 -52.49 -0.41 1.12 16 6 C 0.07 1.77 5.13 -17.82 -0.09 1.68 16 7 N -0.89 -23.65 9.45 55.43 0.52 -23.12 16 8 Si 0.89 20.83 29.54 -169.99 -5.02 15.80 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 C 0.13 2.83 4.50 -4.04 -0.02 2.81 16 13 N -0.72 -12.80 4.80 -60.29 -0.29 -13.09 16 14 C 0.51 8.76 7.15 -10.99 -0.08 8.68 16 15 O -0.55 -11.67 15.98 5.56 0.09 -11.58 16 16 C -0.11 -1.34 2.53 -91.77 -0.23 -1.57 16 17 C -0.10 -1.19 4.22 -26.73 -0.11 -1.31 16 18 C -0.11 -1.01 4.73 -26.73 -0.13 -1.13 16 19 C -0.07 -0.59 0.77 -154.51 -0.12 -0.70 16 20 C -0.14 -1.05 8.47 37.16 0.31 -0.73 16 21 C -0.15 -1.33 7.78 37.16 0.29 -1.04 16 22 C -0.11 -0.96 4.73 -26.76 -0.13 -1.08 16 23 C -0.11 -1.25 4.82 -26.76 -0.13 -1.38 16 24 H 0.01 0.12 6.71 -51.93 -0.35 -0.22 16 25 H 0.08 2.01 6.25 -51.93 -0.32 1.69 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 2.13 6.10 -51.93 -0.32 1.82 16 29 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 30 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.40 6.41 5.57 -40.82 -0.23 6.19 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.07 0.95 6.39 -51.93 -0.33 0.62 16 36 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.67 4.81 -51.93 -0.25 0.42 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.85 6.43 -51.93 -0.33 0.51 16 48 H 0.07 0.76 7.56 -51.93 -0.39 0.37 16 LS Contribution 355.41 15.07 5.36 5.36 Total: -1.00 -28.09 355.41 -8.29 -36.38 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -8.76 Total: 3.70 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -0.18 Total: -13.44 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.23 Total: -36.21 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.09 -8.29 -36.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457997526.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.402 kcal (2) G-P(sol) polarization free energy of solvation -28.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds