Wall clock time and date at job start Tue Mar 31 2020 05:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47071 * 2 1 4 4 C 1.50698 * 109.46919 * 239.99999 * 2 1 3 5 5 H 1.08001 * 119.99818 * 237.00600 * 4 2 1 6 6 C 1.37880 * 120.00187 * 57.00864 * 4 2 1 7 7 N 1.31520 * 119.99620 * 5.53800 * 6 4 2 8 8 Si 1.86793 * 120.00110 * 185.54411 * 6 4 2 9 9 H 1.48504 * 109.47365 * 84.99703 * 8 6 4 10 10 H 1.48499 * 109.47061 * 204.99984 * 8 6 4 11 11 H 1.48503 * 109.47005 * 324.99462 * 8 6 4 12 12 C 1.52996 * 109.47016 * 120.00209 * 2 1 3 13 13 N 1.46505 * 109.47219 * 299.99659 * 12 2 1 14 14 C 1.34776 * 119.99975 * 180.02562 * 13 12 2 15 15 O 1.21279 * 120.00350 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99861 * 180.02562 * 14 13 12 17 17 C 1.52999 * 109.47464 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47461 * 179.97438 * 17 16 14 19 19 C 1.52996 * 109.46996 * 300.00430 * 18 17 16 20 20 C 1.53001 * 109.46996 * 180.02562 * 19 18 17 21 21 C 1.53007 * 109.47280 * 299.99649 * 19 18 17 22 22 C 1.52996 * 109.47519 * 59.99858 * 19 18 17 23 23 C 1.52999 * 109.47249 * 300.00243 * 16 14 13 24 24 H 1.09000 * 109.46506 * 293.93342 * 1 2 3 25 25 H 1.08998 * 109.46860 * 53.92704 * 1 2 3 26 26 H 1.08996 * 109.46912 * 173.93289 * 1 2 3 27 27 H 1.08999 * 109.46717 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.46979 * 300.00085 * 3 2 1 29 29 H 1.09002 * 109.47330 * 60.00512 * 3 2 1 30 30 H 0.96998 * 119.99566 * 180.02562 * 7 6 4 31 31 H 1.09002 * 109.47138 * 180.02562 * 12 2 1 32 32 H 1.08997 * 109.47358 * 59.99841 * 12 2 1 33 33 H 0.97002 * 119.99764 * 0.02562 * 13 12 2 34 34 H 1.08999 * 109.47227 * 59.99889 * 16 14 13 35 35 H 1.09006 * 109.46699 * 60.00149 * 17 16 14 36 36 H 1.08997 * 109.47206 * 300.00291 * 17 16 14 37 37 H 1.08996 * 109.47222 * 180.02562 * 18 17 16 38 38 H 1.08994 * 109.46652 * 60.00121 * 18 17 16 39 39 H 1.09006 * 109.47080 * 60.00041 * 20 19 18 40 40 H 1.08997 * 109.47249 * 179.97438 * 20 19 18 41 41 H 1.08999 * 109.47127 * 299.99685 * 20 19 18 42 42 H 1.09002 * 109.46626 * 60.00390 * 21 19 18 43 43 H 1.08997 * 109.47187 * 180.02562 * 21 19 18 44 44 H 1.08997 * 109.46861 * 300.00528 * 21 19 18 45 45 H 1.08999 * 109.47062 * 60.00034 * 22 19 18 46 46 H 1.08997 * 109.47358 * 179.97438 * 22 19 18 47 47 H 1.09006 * 109.47060 * 299.99940 * 23 16 14 48 48 H 1.08997 * 109.47457 * 59.99653 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6925 -1.5595 -1.1321 6 6 1.6491 -0.2764 -2.4818 7 7 0.9350 0.8209 -2.6071 8 14 2.1440 -1.2471 -3.9991 9 1 1.1617 -2.3362 -4.2322 10 1 2.1707 -0.3439 -5.1775 11 1 3.4931 -1.8328 -3.7938 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8778 -0.4909 3.6695 15 8 2.5750 -1.4770 3.7808 16 6 1.3750 0.2192 4.9000 17 6 1.8850 -0.5020 6.1492 18 6 1.3751 0.2193 7.3985 19 6 1.8851 1.6618 7.3983 20 6 1.3757 2.3829 8.6479 21 6 3.4151 1.6619 7.3983 22 6 1.3750 2.3830 6.1491 23 6 1.8839 1.6621 4.8999 24 1 -0.3632 0.4169 0.9393 25 1 -0.3633 0.6051 -0.8306 26 1 -0.3633 -1.0219 -0.1086 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 0.6651 1.1260 -3.4874 31 1 3.1300 -0.7209 1.2494 32 1 1.6767 -1.7489 1.2492 33 1 0.9938 0.7578 2.3564 34 1 0.2850 0.2184 4.9000 35 1 2.9751 -0.5015 6.1494 36 1 1.5221 -1.5297 6.1491 37 1 1.7389 -0.2942 8.2884 38 1 0.2852 0.2193 7.3985 39 1 1.7396 1.8690 9.5377 40 1 1.7393 3.4104 8.6481 41 1 0.2857 2.3829 8.6485 42 1 3.7784 1.1480 6.5082 43 1 3.7784 2.6896 7.3986 44 1 3.7785 1.1481 8.2882 45 1 0.2850 2.3830 6.1492 46 1 1.7379 3.4108 6.1493 47 1 2.9740 1.6629 4.8998 48 1 1.5202 2.1756 4.0099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457997526.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:38 Heat of formation + Delta-G solvation = -95.979263 kcal Electronic energy + Delta-G solvation = -23346.774284 eV Core-core repulsion = 20206.204107 eV Total energy + Delta-G solvation = -3140.570177 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.39506 -39.65726 -38.06871 -35.04290 -34.22795 -32.64887 -31.64325 -28.29632 -28.13838 -27.57524 -27.35610 -26.28846 -23.56709 -23.02955 -21.04834 -20.59522 -19.28598 -18.40437 -17.67809 -16.74682 -16.55571 -16.37898 -15.78044 -15.68097 -15.12352 -14.84581 -14.79511 -14.59006 -14.13506 -13.98737 -13.67189 -13.38286 -13.22512 -13.12826 -13.05302 -12.76216 -12.69376 -12.61836 -12.51486 -12.29439 -12.24854 -12.14877 -11.84938 -11.83619 -11.49008 -11.34253 -11.25174 -11.06439 -10.82244 -10.74914 -10.53397 -10.39536 -9.91413 -8.04062 -6.18572 1.41782 1.44310 1.51913 1.72611 2.34647 2.51041 3.19770 3.65814 3.71869 3.79639 4.11248 4.15660 4.21304 4.41635 4.45866 4.49135 4.50229 4.59168 4.63171 4.71103 4.74780 4.89816 4.94818 4.98302 5.00650 5.04643 5.09363 5.11487 5.14565 5.17109 5.18464 5.19441 5.26212 5.30583 5.37022 5.39578 5.54333 5.56685 5.60797 5.66227 5.67207 5.69518 6.13096 6.20523 6.42317 6.70804 6.85206 7.36247 7.48738 8.95412 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.037959 B = 0.003427 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.462187 B = 8167.371285 C = 8446.803404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.052 3.948 3 C -0.118 4.118 4 C -0.533 4.533 5 H 0.042 0.958 6 C 0.030 3.970 7 N -0.897 5.897 8 Si 0.944 3.056 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.147 3.853 13 N -0.710 5.710 14 C 0.504 3.496 15 O -0.596 6.596 16 C -0.095 4.095 17 C -0.097 4.097 18 C -0.101 4.101 19 C -0.066 4.066 20 C -0.137 4.137 21 C -0.147 4.147 22 C -0.101 4.101 23 C -0.111 4.111 24 H 0.039 0.961 25 H 0.060 0.940 26 H 0.017 0.983 27 H 0.016 0.984 28 H 0.062 0.938 29 H 0.037 0.963 30 H 0.261 0.739 31 H 0.034 0.966 32 H 0.035 0.965 33 H 0.408 0.592 34 H 0.113 0.887 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.045 0.955 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.058 0.942 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.223 6.215 20.227 21.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.051 3.949 3 C -0.176 4.176 4 C -0.572 4.572 5 H 0.061 0.939 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.771 3.229 9 H -0.204 1.204 10 H -0.207 1.207 11 H -0.202 1.202 12 C 0.023 3.977 13 N -0.361 5.361 14 C 0.292 3.708 15 O -0.477 6.477 16 C -0.116 4.116 17 C -0.135 4.135 18 C -0.138 4.138 19 C -0.066 4.066 20 C -0.194 4.194 21 C -0.204 4.204 22 C -0.139 4.139 23 C -0.148 4.148 24 H 0.057 0.943 25 H 0.079 0.921 26 H 0.036 0.964 27 H 0.035 0.965 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.246 0.754 34 H 0.131 0.869 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.077 0.923 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.816 5.646 20.137 20.992 hybrid contribution 0.302 -0.576 -1.476 1.613 sum -1.514 5.070 18.661 19.396 Atomic orbital electron populations 1.21641 0.97009 0.99147 0.99760 1.18345 0.93260 0.93039 0.90228 1.21667 0.97804 0.97773 1.00371 1.21273 1.29644 1.14466 0.91775 0.93944 1.25438 0.95152 0.95551 1.00848 1.69925 1.38082 1.21889 1.23690 0.85796 0.78500 0.78860 0.79785 1.20405 1.20744 1.20215 1.21228 0.96760 0.95048 0.84632 1.46186 1.52709 1.31877 1.05360 1.21483 0.79541 0.84069 0.85750 1.90632 1.40534 1.28898 1.87629 1.21360 1.02717 0.96417 0.91144 1.21332 1.00759 0.98341 0.93098 1.21589 1.01078 0.94737 0.96438 1.20570 0.95341 0.94985 0.95739 1.21819 1.01279 1.00117 0.96188 1.21985 0.95251 1.01730 1.01414 1.21570 1.01322 0.98817 0.92150 1.21566 1.01030 0.92342 0.99906 0.94261 0.92072 0.96424 0.96510 0.91871 0.94394 0.92992 0.94773 0.94644 0.75448 0.86865 0.92663 0.92875 0.91215 0.90786 0.92479 0.92275 0.92023 0.93586 0.92283 0.92573 0.90503 0.90729 0.92337 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.23 8.03 71.98 0.58 -4.66 16 2 C 0.05 2.42 0.50 -52.93 -0.03 2.39 16 3 C -0.12 -5.26 8.11 71.98 0.58 -4.68 16 4 C -0.53 -28.59 8.01 25.60 0.20 -28.38 16 5 H 0.04 2.34 7.75 -2.91 -0.02 2.31 16 6 C 0.03 1.60 5.13 84.65 0.43 2.04 16 7 N -0.90 -47.94 9.45 21.45 0.20 -47.74 16 8 Si 0.94 42.90 29.54 68.60 2.03 44.93 16 9 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 C 0.15 6.41 4.50 86.38 0.39 6.80 16 13 N -0.71 -24.74 4.80 -463.06 -2.22 -26.96 16 14 C 0.50 17.18 7.15 87.66 0.63 17.81 16 15 O -0.60 -25.55 15.98 -3.03 -0.05 -25.60 16 16 C -0.10 -2.25 2.53 -11.54 -0.03 -2.28 16 17 C -0.10 -2.24 4.22 30.59 0.13 -2.12 16 18 C -0.10 -1.65 4.73 30.59 0.14 -1.50 16 19 C -0.07 -0.98 0.77 -52.18 -0.04 -1.02 16 20 C -0.14 -1.58 8.47 71.98 0.61 -0.97 16 21 C -0.15 -2.42 7.78 71.98 0.56 -1.86 16 22 C -0.10 -1.51 4.73 30.58 0.14 -1.36 16 23 C -0.11 -2.21 4.82 30.58 0.15 -2.06 16 24 H 0.04 1.44 6.71 -2.39 -0.02 1.43 16 25 H 0.06 2.99 6.25 -2.39 -0.01 2.97 16 26 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 3.12 6.10 -2.39 -0.01 3.11 16 29 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 30 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 31 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.41 12.28 5.57 -92.71 -0.52 11.76 16 34 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.05 1.46 6.39 -2.38 -0.02 1.44 16 36 H 0.05 1.36 8.10 -2.39 -0.02 1.34 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 40 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.05 0.93 4.81 -2.39 -0.01 0.92 16 43 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.06 1.33 6.43 -2.38 -0.02 1.31 16 48 H 0.07 1.40 7.56 -2.39 -0.02 1.38 16 Total: -1.00 -61.01 355.41 4.81 -56.20 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.40 Total: 21.02 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: 4.46 Total: -21.85 kcal Atomic # 7 Polarization: -72.68 SS G_CDS: -2.02 Total: -74.70 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.05 Total: -25.60 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -61.01 4.81 -56.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457997526.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.783 kcal (2) G-P(sol) polarization free energy of solvation -61.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds