Wall clock time and date at job start Tue Mar 31 2020 05:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99730 * 2 1 4 4 H 1.48501 * 109.47086 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47126 * 300.00328 * 3 2 1 6 6 H 1.48499 * 109.47284 * 60.00244 * 3 2 1 7 7 C 1.38807 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99930 * 158.86709 * 7 2 1 9 9 N 1.36935 * 120.00273 * 338.86170 * 7 2 1 10 10 C 1.46503 * 119.99932 * 321.88404 * 9 7 2 11 11 C 1.52997 * 109.47213 * 269.99491 * 10 9 7 12 12 O 1.42904 * 109.46799 * 65.00333 * 11 10 9 13 13 C 1.42901 * 113.99592 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.46766 * 179.97438 * 13 12 11 15 15 C 1.54268 * 110.03357 * 292.90487 * 14 13 12 16 16 C 1.54966 * 104.15944 * 217.13684 * 15 14 13 17 17 C 1.54892 * 102.77850 * 37.88948 * 16 15 14 18 18 C 1.53874 * 110.03332 * 175.68684 * 14 13 12 19 19 C 1.46503 * 120.00019 * 141.88104 * 9 7 2 20 20 C 1.54266 * 110.02968 * 297.71266 * 19 9 7 21 21 C 1.54964 * 104.15905 * 95.75805 * 20 19 9 22 22 C 1.54885 * 102.78197 * 37.88446 * 21 20 19 23 23 C 1.53878 * 110.03182 * 54.92930 * 19 9 7 24 24 H 0.97003 * 120.00377 * 355.05055 * 1 2 3 25 25 H 1.09000 * 109.47068 * 29.99990 * 10 9 7 26 26 H 1.09002 * 109.46768 * 149.99420 * 10 9 7 27 27 H 1.08999 * 109.47012 * 184.99874 * 11 10 9 28 28 H 1.08997 * 109.46997 * 305.00493 * 11 10 9 29 29 H 1.09005 * 109.46557 * 299.99281 * 13 12 11 30 30 H 1.08999 * 109.47584 * 59.99754 * 13 12 11 31 31 H 1.08998 * 110.01802 * 54.29604 * 14 13 12 32 32 H 1.09004 * 110.48352 * 335.78344 * 15 14 13 33 33 H 1.08997 * 110.48847 * 98.42788 * 15 14 13 34 34 H 1.08995 * 110.72207 * 279.57371 * 16 15 14 35 35 H 1.09001 * 110.91781 * 156.29183 * 16 15 14 36 36 H 1.08998 * 110.48465 * 203.40819 * 17 16 15 37 37 H 1.08994 * 110.60167 * 80.81025 * 17 16 15 38 38 H 1.09000 * 110.03628 * 238.57429 * 18 14 13 39 39 H 1.09000 * 110.02884 * 359.97438 * 18 14 13 40 40 H 1.08998 * 110.01536 * 176.32057 * 19 9 7 41 41 H 1.09006 * 110.48173 * 214.39929 * 20 19 9 42 42 H 1.08998 * 110.49079 * 337.04237 * 20 19 9 43 43 H 1.09004 * 110.71749 * 279.56638 * 21 20 19 44 44 H 1.08998 * 110.92537 * 156.29267 * 21 20 19 45 45 H 1.09003 * 110.48947 * 203.41248 * 22 21 20 46 46 H 1.08995 * 110.60093 * 80.81585 * 22 21 20 47 47 H 1.09006 * 110.02967 * 359.95370 * 23 19 9 48 48 H 1.08996 * 110.02760 * 121.38069 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0357 -1.2334 -0.3378 9 7 1.3947 -2.3483 0.4266 10 6 0.4746 -2.3048 1.5658 11 6 1.2539 -2.5457 2.8603 12 8 2.1694 -1.4691 3.0724 13 6 2.9517 -1.5972 4.2614 14 6 3.8913 -0.3961 4.3854 15 6 4.9459 -0.4317 3.2601 16 6 6.2406 0.0845 3.9375 17 6 6.1604 -0.5418 5.3518 18 6 4.6629 -0.4656 5.7149 19 6 1.6562 -3.6181 -0.2557 20 6 1.1917 -3.5343 -1.7244 21 6 2.4761 -3.1621 -2.5075 22 6 3.5720 -3.9748 -1.7744 23 6 3.1691 -3.8977 -0.2873 24 1 -0.4851 0.8369 0.0725 25 1 -0.0060 -1.3274 1.6075 26 1 -0.2845 -3.0783 1.4494 27 1 0.5586 -2.6017 3.6978 28 1 1.8061 -3.4823 2.7830 29 1 2.2918 -1.6338 5.1282 30 1 3.5391 -2.5141 4.2128 31 1 3.3206 0.5311 4.3330 32 1 5.0846 -1.4509 2.8994 33 1 4.6536 0.2270 2.4423 34 1 6.2375 1.1729 3.9962 35 1 7.1248 -0.2699 3.4077 36 1 6.7543 0.0367 6.0594 37 1 6.4957 -1.5787 5.3317 38 1 4.4673 0.4282 6.3074 39 1 4.3677 -1.3548 6.2718 40 1 1.1372 -4.4295 0.2544 41 1 0.8072 -4.4980 -2.0584 42 1 0.4345 -2.7590 -1.8414 43 1 2.6752 -2.0928 -2.4359 44 1 2.3992 -3.4702 -3.5502 45 1 4.5509 -3.5208 -1.9284 46 1 3.5746 -5.0100 -2.1157 47 1 3.7087 -3.0881 0.2043 48 1 3.3841 -4.8448 0.2075 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459344039.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:23 Heat of formation + Delta-G solvation = -53.368013 kcal Electronic energy + Delta-G solvation = -24099.183581 eV Core-core repulsion = 20960.461167 eV Total energy + Delta-G solvation = -3138.722415 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -38.42435 -37.72037 -36.35408 -33.88840 -31.08870 -30.02964 -28.50298 -28.00189 -27.71208 -26.38961 -23.99807 -23.23678 -20.92326 -20.46338 -19.70401 -19.28515 -18.87903 -16.35837 -16.13719 -15.36300 -15.17336 -14.91714 -14.73465 -14.45306 -14.08449 -13.51545 -13.15912 -13.00702 -12.85669 -12.55827 -12.30247 -11.68622 -11.27736 -11.06952 -10.98585 -10.96315 -10.84347 -10.76197 -10.61085 -10.46110 -10.34113 -10.33686 -10.24805 -10.11060 -10.07651 -10.06902 -9.85460 -9.66890 -9.58026 -9.32574 -8.69022 -8.23886 -6.40437 -5.55427 -3.14657 3.49687 3.58060 3.60280 4.41388 4.67756 4.83014 4.85514 5.04639 5.38598 5.51195 5.52490 5.57476 5.60838 5.66047 5.70706 5.79123 5.79931 5.82800 5.86413 5.97786 6.00418 6.03888 6.16032 6.24989 6.27817 6.32900 6.34056 6.39423 6.43521 6.47248 6.52384 6.64326 6.68761 6.71037 6.73085 6.76095 6.81117 6.83638 6.96967 7.21922 7.26973 7.44643 7.75340 8.02941 8.19365 8.73490 9.38557 10.02883 10.58953 11.42822 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014389 B = 0.006331 C = 0.005765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.491064 B = 4421.716495 C = 4855.486603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.016 3.984 3 Si 0.885 3.115 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.291 1.291 7 C -0.216 4.216 8 H 0.057 0.943 9 N -0.569 5.569 10 C 0.144 3.856 11 C 0.050 3.950 12 O -0.346 6.346 13 C 0.067 3.933 14 C -0.089 4.089 15 C -0.109 4.109 16 C -0.128 4.128 17 C -0.123 4.123 18 C -0.117 4.117 19 C 0.169 3.831 20 C -0.129 4.129 21 C -0.115 4.115 22 C -0.119 4.119 23 C -0.132 4.132 24 H 0.248 0.752 25 H 0.101 0.899 26 H 0.037 0.963 27 H 0.020 0.980 28 H 0.025 0.975 29 H 0.031 0.969 30 H 0.035 0.965 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.043 0.957 41 H 0.037 0.963 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.041 0.959 45 H 0.049 0.951 46 H 0.047 0.953 47 H 0.074 0.926 48 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.388 -4.963 7.136 11.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.183 4.183 3 Si 0.715 3.285 4 H -0.202 1.202 5 H -0.225 1.225 6 H -0.218 1.218 7 C -0.346 4.346 8 H 0.074 0.926 9 N -0.289 5.289 10 C 0.017 3.983 11 C -0.030 4.030 12 O -0.265 6.265 13 C -0.011 4.011 14 C -0.108 4.108 15 C -0.146 4.146 16 C -0.166 4.166 17 C -0.160 4.160 18 C -0.155 4.155 19 C 0.062 3.938 20 C -0.169 4.169 21 C -0.152 4.152 22 C -0.157 4.157 23 C -0.172 4.172 24 H 0.058 0.942 25 H 0.119 0.881 26 H 0.055 0.945 27 H 0.039 0.961 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.060 0.940 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.093 0.907 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.280 -4.674 6.943 11.093 hybrid contribution 0.394 0.617 0.400 0.834 sum 7.674 -4.057 7.343 11.370 Atomic orbital electron populations 1.70048 1.05434 1.25376 1.52907 1.24934 0.94698 0.98103 1.00533 0.86519 0.80014 0.85167 0.76767 1.20245 1.22495 1.21758 1.18734 0.93201 0.85243 1.37452 0.92565 1.43785 1.51677 1.03243 1.30158 1.20992 0.90678 1.03198 0.83426 1.23407 0.91293 0.88900 0.99370 1.88220 1.53096 1.44915 1.40221 1.22493 0.93066 0.96726 0.88773 1.21696 0.95908 0.98758 0.94394 1.22311 0.92956 1.01919 0.97428 1.22560 0.98363 1.00081 0.95595 1.22338 0.96075 1.00602 0.97002 1.22136 0.94976 1.01481 0.96912 1.21040 0.92451 0.88711 0.91623 1.22775 0.97822 0.99213 0.97056 1.22405 0.95318 1.00981 0.96504 1.22262 0.98256 0.98542 0.96596 1.22606 0.99244 0.99979 0.95334 0.94207 0.88121 0.94484 0.96141 0.95684 0.95113 0.94637 0.90595 0.91433 0.91049 0.91891 0.91933 0.92198 0.91890 0.91926 0.92011 0.93844 0.94382 0.90504 0.90481 0.93978 0.93172 0.93383 0.90699 0.94204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.57 11.49 55.49 0.64 -24.93 16 2 C 0.02 0.43 4.95 -17.43 -0.09 0.35 16 3 Si 0.88 22.23 29.61 -169.99 -5.03 17.20 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 6 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 7 C -0.22 -5.66 6.82 -15.06 -0.10 -5.76 16 8 H 0.06 1.52 6.70 -52.48 -0.35 1.17 16 9 N -0.57 -13.50 2.30 -164.39 -0.38 -13.88 16 10 C 0.14 3.31 5.69 -4.04 -0.02 3.28 16 11 C 0.05 1.00 6.28 37.16 0.23 1.23 16 12 O -0.35 -7.43 9.65 -35.23 -0.34 -7.77 16 13 C 0.07 1.14 4.98 37.16 0.19 1.32 16 14 C -0.09 -1.41 3.19 -89.50 -0.29 -1.69 16 15 C -0.11 -1.78 6.22 -25.03 -0.16 -1.93 16 16 C -0.13 -1.68 6.91 -24.70 -0.17 -1.85 16 17 C -0.12 -1.41 6.83 -25.07 -0.17 -1.58 16 18 C -0.12 -1.46 6.46 -25.61 -0.17 -1.62 16 19 C 0.17 3.51 3.47 -66.81 -0.23 3.28 16 20 C -0.13 -2.61 6.17 -25.03 -0.15 -2.76 16 21 C -0.11 -2.16 6.56 -24.70 -0.16 -2.33 16 22 C -0.12 -2.04 6.83 -25.07 -0.17 -2.22 16 23 C -0.13 -2.50 6.15 -25.61 -0.16 -2.66 16 24 H 0.25 6.98 8.32 -40.82 -0.34 6.64 16 25 H 0.10 2.67 5.55 -51.93 -0.29 2.39 16 26 H 0.04 0.80 7.97 -51.93 -0.41 0.38 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.58 8.02 -51.93 -0.42 0.16 16 31 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.07 1.15 7.77 -51.93 -0.40 0.74 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.71 7.67 -51.93 -0.40 0.31 16 40 H 0.04 0.85 7.86 -51.93 -0.41 0.45 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 1.82 8.04 -51.93 -0.42 1.40 16 43 H 0.08 1.65 7.17 -51.93 -0.37 1.28 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.07 1.59 6.70 -51.93 -0.35 1.24 16 48 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 365.77 15.07 5.51 5.51 Total: -1.00 -27.92 365.77 -10.51 -38.43 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -9.29 Total: 0.37 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -1.62 Total: -14.94 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.26 Total: -38.81 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.34 Total: -7.77 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.20 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -27.92 -10.51 -38.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459344039.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.936 kcal (2) G-P(sol) polarization free energy of solvation -27.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds