Wall clock time and date at job start Tue Mar 31 2020 05:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00209 * 2 1 4 4 H 1.48500 * 109.47268 * 270.00103 * 3 2 1 5 5 H 1.48508 * 109.46983 * 29.99608 * 3 2 1 6 6 H 1.48493 * 109.47167 * 149.99630 * 3 2 1 7 7 C 1.37880 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99730 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99872 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46886 * 180.02562 * 9 7 2 11 11 C 1.46900 * 110.99972 * 190.00475 * 10 9 7 12 12 C 1.53005 * 109.47217 * 161.27236 * 11 10 9 13 13 O 1.42899 * 109.46819 * 297.90864 * 12 11 10 14 14 C 1.42899 * 113.99718 * 175.16141 * 13 12 11 15 15 C 1.52995 * 109.47367 * 184.95850 * 14 13 12 16 16 C 1.54273 * 110.03102 * 294.15367 * 15 14 13 17 17 C 1.54955 * 104.15913 * 217.13543 * 16 15 14 18 18 C 1.54886 * 102.77995 * 37.88760 * 17 16 15 19 19 C 1.53870 * 110.03446 * 176.93639 * 15 14 13 20 20 C 1.46895 * 111.00110 * 66.04716 * 10 9 7 21 21 C 1.53001 * 109.47258 * 202.04152 * 20 10 9 22 22 C 1.52993 * 117.49910 * 242.22689 * 21 20 10 23 23 C 1.53002 * 117.49984 * 173.60140 * 21 20 10 24 24 H 0.97000 * 120.00252 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47172 * 60.00302 * 9 7 2 26 26 H 1.08998 * 109.47371 * 299.99864 * 9 7 2 27 27 H 1.09002 * 109.47324 * 41.27248 * 11 10 9 28 28 H 1.08999 * 109.46621 * 281.27012 * 11 10 9 29 29 H 1.09002 * 109.47142 * 177.90736 * 12 11 10 30 30 H 1.09001 * 109.46677 * 57.90768 * 12 11 10 31 31 H 1.09008 * 109.46937 * 304.95713 * 14 13 12 32 32 H 1.08995 * 109.47377 * 64.95315 * 14 13 12 33 33 H 1.09001 * 110.01734 * 55.54368 * 15 14 13 34 34 H 1.08999 * 110.48300 * 335.78453 * 16 15 14 35 35 H 1.09008 * 110.48394 * 98.42525 * 16 15 14 36 36 H 1.09006 * 110.72338 * 279.57054 * 17 16 15 37 37 H 1.09004 * 110.92456 * 156.29788 * 17 16 15 38 38 H 1.09003 * 110.48941 * 203.40091 * 18 17 16 39 39 H 1.09000 * 110.59668 * 80.82000 * 18 17 16 40 40 H 1.09002 * 110.03129 * 238.56227 * 19 15 14 41 41 H 1.08996 * 110.03601 * 0.02562 * 19 15 14 42 42 H 1.09001 * 109.47396 * 322.04093 * 20 10 9 43 43 H 1.09001 * 109.47014 * 82.04337 * 20 10 9 44 44 H 1.08997 * 115.54912 * 27.93281 * 21 20 10 45 45 H 1.09001 * 117.50205 * 359.97438 * 22 21 20 46 46 H 1.09007 * 117.50302 * 145.01978 * 22 21 20 47 47 H 1.08998 * 117.49552 * 214.98069 * 23 21 20 48 48 H 1.08990 * 117.49708 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 7 2.2056 -3.6157 0.0027 11 6 1.5211 -4.8937 -0.2344 12 6 2.5398 -5.9416 -0.6873 13 8 3.1315 -5.5287 -1.9207 14 6 4.1795 -6.3858 -2.3782 15 6 4.8190 -5.7852 -3.6317 16 6 3.8006 -5.7733 -4.7905 17 6 4.6501 -6.0985 -6.0450 18 6 5.6575 -7.1483 -5.5139 19 6 5.9993 -6.6587 -4.0914 20 6 2.9708 -3.6530 1.2560 21 6 4.2758 -4.4202 1.0341 22 6 4.4875 -5.7024 1.8416 23 6 5.2862 -4.4428 2.1829 24 1 -0.4850 0.8400 -0.0004 25 1 0.6240 -2.5575 -0.8880 26 1 0.6246 -2.5563 0.8919 27 1 0.7655 -4.7630 -1.0091 28 1 1.0430 -5.2262 0.6870 29 1 2.0383 -6.8992 -0.8274 30 1 3.3158 -6.0454 0.0712 31 1 4.9339 -6.4858 -1.5977 32 1 3.7690 -7.3675 -2.6145 33 1 5.1625 -4.7714 -3.4261 34 1 3.0390 -6.5378 -4.6369 35 1 3.3412 -4.7892 -4.8844 36 1 5.1703 -5.2088 -6.3998 37 1 4.0307 -6.5228 -6.8352 38 1 6.5523 -7.1673 -6.1361 39 1 5.1984 -8.1362 -5.4773 40 1 6.9156 -6.0686 -4.1098 41 1 6.1164 -7.5108 -3.4218 42 1 3.1973 -2.6352 1.5739 43 1 2.3826 -4.1518 2.0262 44 1 4.6696 -4.3942 0.0181 45 1 3.6973 -5.9992 2.5312 46 1 5.0206 -6.5204 1.3568 47 1 6.3445 -4.4319 1.9225 48 1 5.0210 -3.9114 3.0968 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459369282.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:54 Heat of formation + Delta-G solvation = -34.818434 kcal Electronic energy + Delta-G solvation = -23102.912838 eV Core-core repulsion = 19964.994793 eV Total energy + Delta-G solvation = -3137.918045 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.85367 -38.07231 -36.47459 -35.26117 -32.50161 -30.58436 -28.88669 -28.54882 -27.16404 -25.13555 -24.09297 -22.32570 -21.81883 -20.70294 -20.47656 -19.78478 -19.51537 -16.64300 -16.31705 -15.71215 -15.48559 -15.14834 -15.07910 -14.68557 -14.16311 -13.99164 -13.59303 -13.33204 -13.23768 -12.79087 -12.26513 -11.95027 -11.85808 -11.49284 -11.44884 -11.23945 -11.17640 -11.04335 -10.99038 -10.85832 -10.75145 -10.66867 -10.54708 -10.47929 -10.42820 -10.24422 -10.02582 -9.66398 -9.43548 -9.14561 -8.87286 -8.37846 -7.13013 -5.96878 -3.97235 3.36326 3.41987 3.45818 4.01525 4.13662 4.47428 4.62017 4.64445 4.79796 4.84648 5.17982 5.24679 5.27046 5.35771 5.38913 5.41727 5.45506 5.53680 5.61349 5.61985 5.67964 5.75990 5.78501 5.81511 5.82464 5.86613 5.94261 5.99930 6.05945 6.09529 6.12717 6.15972 6.26987 6.32303 6.34167 6.37254 6.51081 6.51763 6.59299 6.87036 7.36385 7.41064 7.70662 7.88979 8.18694 8.31066 8.63808 9.11030 9.66522 11.14081 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013107 B = 0.004645 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.826599 B = 6026.316346 C = 7052.259478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.502 4.502 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.522 5.522 11 C 0.058 3.942 12 C 0.055 3.945 13 O -0.359 6.359 14 C 0.070 3.930 15 C -0.091 4.091 16 C -0.112 4.112 17 C -0.128 4.128 18 C -0.124 4.124 19 C -0.118 4.118 20 C 0.089 3.911 21 C -0.125 4.125 22 C -0.197 4.197 23 C -0.185 4.185 24 H 0.260 0.740 25 H 0.031 0.969 26 H -0.012 1.012 27 H 0.072 0.928 28 H 0.035 0.965 29 H 0.031 0.969 30 H 0.067 0.933 31 H 0.039 0.961 32 H 0.037 0.963 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.090 0.910 43 H 0.019 0.981 44 H 0.112 0.888 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.088 0.912 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.070 -15.618 -4.387 19.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.724 3.276 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.541 4.541 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.246 5.246 11 C -0.071 4.071 12 C -0.022 4.022 13 O -0.278 6.278 14 C -0.007 4.007 15 C -0.109 4.109 16 C -0.149 4.149 17 C -0.165 4.165 18 C -0.161 4.161 19 C -0.156 4.156 20 C -0.040 4.040 21 C -0.144 4.144 22 C -0.234 4.234 23 C -0.223 4.223 24 H 0.070 0.930 25 H 0.049 0.951 26 H 0.006 0.994 27 H 0.090 0.910 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.108 0.892 43 H 0.037 0.963 44 H 0.130 0.870 45 H 0.106 0.894 46 H 0.103 0.897 47 H 0.106 0.894 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.166 -15.240 -4.868 18.955 hybrid contribution -0.110 0.465 0.863 0.986 sum 10.057 -14.774 -4.005 18.315 Atomic orbital electron populations 1.69963 1.06046 1.26639 1.51365 1.24976 0.94822 0.99219 0.95593 0.86527 0.79707 0.83234 0.78118 1.20661 1.21433 1.19875 1.21176 0.93542 0.89893 1.49498 0.91793 1.19732 0.90042 0.87391 0.95934 1.61934 1.27612 1.02186 1.32831 1.22073 0.94988 0.91060 0.98990 1.22902 0.96753 0.95639 0.86914 1.88068 1.50593 1.50381 1.38743 1.22513 0.90055 0.92905 0.95253 1.21734 0.94851 1.00256 0.94070 1.22338 0.97163 1.02314 0.93092 1.22548 0.97585 0.98682 0.97730 1.22349 0.98978 0.98798 0.96024 1.22137 0.97851 0.99157 0.96440 1.21660 0.91502 1.00325 0.90499 1.22581 0.97687 0.97648 0.96476 1.23048 1.03625 0.91968 1.04727 1.22970 0.97155 1.01371 1.00766 0.93031 0.95078 0.99445 0.90996 0.94721 0.95076 0.91468 0.94273 0.94457 0.89969 0.91743 0.91035 0.91608 0.91891 0.92011 0.91898 0.91640 0.91956 0.89190 0.96261 0.86975 0.89359 0.89729 0.89398 0.89111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.50 -14.27 8.21 -34.44 -0.28 -14.55 16 8 H 0.06 1.81 7.35 -52.49 -0.39 1.43 16 9 C 0.19 5.13 4.70 -4.97 -0.02 5.11 16 10 N -0.52 -11.41 4.34 -236.07 -1.02 -12.44 16 11 C 0.06 1.08 5.39 -3.82 -0.02 1.06 16 12 C 0.05 0.87 5.56 37.16 0.21 1.07 16 13 O -0.36 -6.11 10.05 -35.23 -0.35 -6.46 16 14 C 0.07 0.93 4.98 37.16 0.19 1.11 16 15 C -0.09 -1.13 3.19 -89.50 -0.29 -1.41 16 16 C -0.11 -1.37 6.19 -25.03 -0.15 -1.53 16 17 C -0.13 -1.29 6.91 -24.70 -0.17 -1.46 16 18 C -0.12 -1.12 6.83 -25.07 -0.17 -1.29 16 19 C -0.12 -1.17 6.46 -25.61 -0.17 -1.34 16 20 C 0.09 1.74 5.10 -3.83 -0.02 1.72 16 21 C -0.13 -2.03 3.87 -90.62 -0.35 -2.38 16 22 C -0.20 -2.59 8.30 -26.73 -0.22 -2.81 16 23 C -0.19 -2.55 10.25 -26.73 -0.27 -2.82 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.03 0.89 7.84 -51.93 -0.41 0.48 16 26 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 27 H 0.07 1.40 7.75 -51.93 -0.40 1.00 16 28 H 0.03 0.61 7.73 -51.93 -0.40 0.21 16 29 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 1.00 3.60 -51.93 -0.19 0.81 16 31 H 0.04 0.49 8.12 -51.92 -0.42 0.07 16 32 H 0.04 0.45 8.05 -51.93 -0.42 0.04 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.06 0.80 7.79 -51.93 -0.40 0.40 16 35 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.57 7.67 -51.93 -0.40 0.17 16 42 H 0.09 1.98 6.58 -51.93 -0.34 1.64 16 43 H 0.02 0.36 7.43 -51.93 -0.39 -0.02 16 44 H 0.11 1.99 7.91 -51.93 -0.41 1.57 16 45 H 0.09 1.14 8.03 -51.93 -0.42 0.72 16 46 H 0.08 1.00 8.13 -51.92 -0.42 0.57 16 47 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 371.74 15.07 5.60 5.60 Total: -1.00 -29.88 371.74 -11.09 -40.97 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -9.19 Total: -0.24 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -1.85 Total: -18.06 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: -0.29 Total: -38.75 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -0.35 Total: -6.46 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.88 -11.09 -40.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459369282.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.152 kcal (2) G-P(sol) polarization free energy of solvation -29.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds