Wall clock time and date at job start Tue Mar 31 2020 05:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42908 * 113.99362 * 2 1 4 4 C 1.53000 * 109.46703 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47454 * 64.99843 * 4 3 2 6 6 C 1.36932 * 120.00172 * 270.00201 * 5 4 3 7 7 H 1.08001 * 120.00258 * 140.20211 * 6 5 4 8 8 C 1.38811 * 119.99849 * 320.20234 * 6 5 4 9 9 N 1.31620 * 120.00152 * 156.72853 * 8 6 5 10 10 Si 1.86803 * 120.00071 * 336.71929 * 8 6 5 11 11 H 1.48501 * 109.46504 * 95.19910 * 10 8 6 12 12 H 1.48493 * 109.47488 * 215.19708 * 10 8 6 13 13 H 1.48498 * 109.46926 * 335.20195 * 10 8 6 14 14 C 1.46500 * 119.99778 * 89.99840 * 5 4 3 15 15 C 1.52998 * 109.47213 * 264.54706 * 14 5 4 16 16 C 1.52995 * 109.47290 * 182.99417 * 15 14 5 17 17 C 1.53009 * 109.47396 * 175.78999 * 16 15 14 18 18 C 1.52995 * 109.47396 * 180.02562 * 17 16 15 19 19 N 1.46497 * 109.47263 * 180.02562 * 18 17 16 20 20 C 1.34946 * 126.03975 * 125.00445 * 19 18 17 21 21 C 1.35312 * 107.74757 * 179.97438 * 20 19 18 22 22 C 1.39871 * 107.91938 * 359.97438 * 21 20 19 23 23 N 1.30837 * 108.20129 * 359.74094 * 22 21 20 24 24 H 1.09002 * 109.46999 * 60.00468 * 1 2 3 25 25 H 1.09003 * 109.46641 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47148 * 299.99707 * 1 2 3 27 27 H 1.09000 * 109.46986 * 59.99800 * 3 2 1 28 28 H 1.08997 * 109.47102 * 299.99857 * 3 2 1 29 29 H 1.09000 * 109.47198 * 305.00205 * 4 3 2 30 30 H 1.08998 * 109.47337 * 185.00045 * 4 3 2 31 31 H 0.96995 * 120.00373 * 179.97438 * 9 8 6 32 32 H 1.08994 * 109.47072 * 144.54805 * 14 5 4 33 33 H 1.08999 * 109.47193 * 24.54597 * 14 5 4 34 34 H 1.09002 * 109.47211 * 62.99192 * 15 14 5 35 35 H 1.09003 * 109.47141 * 302.99455 * 15 14 5 36 36 H 1.09004 * 109.47221 * 55.79273 * 16 15 14 37 37 H 1.08993 * 109.47175 * 295.79330 * 16 15 14 38 38 H 1.09004 * 109.46711 * 59.99963 * 17 16 15 39 39 H 1.09003 * 109.47176 * 300.00265 * 17 16 15 40 40 H 1.09006 * 109.46841 * 59.99920 * 18 17 16 41 41 H 1.09003 * 109.47175 * 300.00266 * 18 17 16 42 42 H 1.07999 * 126.12521 * 359.97438 * 20 19 18 43 43 H 1.08000 * 126.04449 * 179.97438 * 21 20 19 44 44 H 1.08004 * 125.90050 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5646 -1.2527 6 6 4.0968 -0.7968 -1.3369 7 1 3.7879 -1.3120 -2.2344 8 6 4.6167 -1.5146 -0.2686 9 7 4.3294 -2.7918 -0.1318 10 14 5.7244 -0.6682 0.9749 11 1 4.9135 -0.2195 2.1352 12 1 6.7667 -1.6192 1.4375 13 1 6.3732 0.5072 0.3403 14 6 4.2863 1.4009 -2.4148 15 6 3.0596 1.4850 -3.3251 16 6 3.4066 2.2963 -4.5750 17 6 2.2138 2.2922 -5.5333 18 6 2.5610 3.1030 -6.7834 19 7 1.4187 3.0996 -7.7006 20 6 0.8066 4.1888 -8.2104 21 6 -0.1975 3.7611 -9.0102 22 6 -0.1987 2.3626 -8.9890 23 7 0.7735 1.9649 -8.2089 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6885 1.8465 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8514 0.5684 0.8409 30 1 3.9785 2.1767 0.0889 31 1 4.6929 -3.2935 0.6145 32 1 5.1183 0.9625 -2.9658 33 1 4.5594 2.4015 -2.0797 34 1 2.2435 1.9717 -2.7910 35 1 2.7543 0.4802 -3.6173 36 1 4.2707 1.8514 -5.0686 37 1 3.6396 3.3220 -4.2893 38 1 1.3497 2.7371 -5.0396 39 1 1.9808 1.2665 -5.8190 40 1 3.4251 2.6577 -7.2768 41 1 2.7944 4.1288 -6.4980 42 1 1.0708 5.2176 -8.0149 43 1 -0.8779 4.3887 -9.5667 44 1 -0.8811 1.7216 -9.5275 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459536767.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:46 Heat of formation + Delta-G solvation = 48.775461 kcal Electronic energy + Delta-G solvation = -22018.501141 eV Core-core repulsion = 18780.667656 eV Total energy + Delta-G solvation = -3237.833485 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.20368 -37.49679 -36.36400 -35.18527 -32.84105 -31.44621 -30.34280 -29.60438 -28.22650 -25.67522 -25.59912 -23.41679 -22.24019 -21.26795 -20.75551 -20.57351 -20.10073 -17.27534 -16.74054 -15.93867 -15.83674 -15.29394 -14.90367 -14.64998 -14.45622 -14.23907 -14.01344 -13.59178 -13.33180 -13.16125 -12.89733 -12.61681 -12.38299 -11.95104 -11.91455 -11.66134 -11.45379 -11.33835 -10.83906 -10.71688 -10.62994 -10.57198 -10.55307 -10.40881 -9.88219 -9.72013 -9.53167 -9.48609 -8.80132 -8.71751 -8.31784 -6.66559 -5.83530 -3.25169 1.79925 2.42115 2.73711 3.40016 3.53554 3.58093 4.33548 4.60753 4.65575 4.66628 4.76529 4.92910 5.06086 5.08509 5.25658 5.38197 5.46779 5.51922 5.61558 5.72921 5.74114 5.80492 5.83883 5.87484 5.98022 6.02092 6.11236 6.16564 6.17953 6.21619 6.25578 6.33699 6.45437 6.50227 6.54399 6.79928 6.88793 6.90442 7.07293 7.60905 8.02075 8.22892 8.56359 9.12336 9.87507 10.26261 11.32702 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021984 B = 0.003332 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.340036 B = 8400.632442 C = 8821.316012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.346 6.346 3 C 0.046 3.954 4 C 0.134 3.866 5 N -0.598 5.598 6 C -0.252 4.252 7 H 0.073 0.927 8 C 0.044 3.956 9 N -0.896 5.896 10 Si 0.870 3.130 11 H -0.287 1.287 12 H -0.303 1.303 13 H -0.271 1.271 14 C 0.149 3.851 15 C -0.134 4.134 16 C -0.114 4.114 17 C -0.128 4.128 18 C 0.131 3.869 19 N -0.368 5.368 20 C 0.049 3.951 21 C -0.281 4.281 22 C 0.038 3.962 23 N -0.290 5.290 24 H 0.028 0.972 25 H 0.078 0.922 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.037 0.963 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.260 0.740 32 H 0.052 0.948 33 H 0.034 0.966 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.171 0.829 43 H 0.144 0.856 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.780 16.251 -11.725 21.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.264 6.264 3 C -0.034 4.034 4 C 0.008 3.992 5 N -0.320 5.320 6 C -0.381 4.381 7 H 0.091 0.909 8 C -0.156 4.156 9 N -0.537 5.537 10 Si 0.701 3.299 11 H -0.215 1.215 12 H -0.231 1.231 13 H -0.196 1.196 14 C 0.023 3.977 15 C -0.174 4.174 16 C -0.153 4.153 17 C -0.166 4.166 18 C 0.010 3.990 19 N -0.150 5.150 20 C -0.097 4.097 21 C -0.310 4.310 22 C -0.148 4.148 23 N -0.112 5.112 24 H 0.047 0.953 25 H 0.097 0.903 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.188 0.812 43 H 0.162 0.838 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -5.863 14.904 -11.035 19.449 hybrid contribution -0.301 1.435 0.447 1.533 sum -6.164 16.339 -10.588 20.422 Atomic orbital electron populations 1.22638 0.83928 1.01839 0.98171 1.88311 1.16780 1.26503 1.94765 1.23331 0.97594 0.85048 0.97409 1.21331 0.90236 0.96416 0.91253 1.44006 1.76294 1.03828 1.07836 1.18532 1.36182 0.79913 1.03443 0.90947 1.25400 0.97843 0.94761 0.97601 1.69907 1.44158 1.08691 1.30971 0.87008 0.81824 0.79389 0.81724 1.21543 1.23088 1.19632 1.20901 0.94520 0.93377 0.88908 1.22188 1.00430 0.99971 0.94854 1.21517 0.96947 1.00481 0.96326 1.21885 0.99541 1.01395 0.93825 1.21906 0.85387 1.02435 0.89250 1.48901 1.26256 1.03657 1.36191 1.22582 0.95781 0.93582 0.97782 1.21495 1.04827 0.95135 1.09569 1.23902 0.97347 0.95172 0.98386 1.77411 1.10254 1.08459 1.15074 0.95345 0.90344 0.95647 0.95711 0.94452 0.92020 0.93029 0.93054 0.93012 0.94773 0.93173 0.91576 0.91732 0.92439 0.91808 0.90346 0.89674 0.88809 0.81172 0.83785 0.80219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 101.05 1.11 1.67 16 2 O -0.35 -7.93 10.18 -35.23 -0.36 -8.29 16 3 C 0.05 0.91 6.28 37.16 0.23 1.14 16 4 C 0.13 2.93 4.99 -4.04 -0.02 2.91 16 5 N -0.60 -14.14 2.02 -173.25 -0.35 -14.49 16 6 C -0.25 -7.13 9.38 -15.06 -0.14 -7.27 16 7 H 0.07 2.25 8.06 -52.49 -0.42 1.82 16 8 C 0.04 1.30 5.27 -17.43 -0.09 1.21 16 9 N -0.90 -28.09 13.97 55.49 0.78 -27.32 16 10 Si 0.87 22.53 25.24 -169.99 -4.29 18.24 16 11 H -0.29 -7.31 6.67 56.52 0.38 -6.93 16 12 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 13 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 14 C 0.15 2.85 5.72 -4.04 -0.02 2.83 16 15 C -0.13 -2.25 5.51 -26.73 -0.15 -2.40 16 16 C -0.11 -1.41 5.21 -26.73 -0.14 -1.55 16 17 C -0.13 -1.53 5.41 -26.73 -0.14 -1.68 16 18 C 0.13 1.28 6.51 -4.05 -0.03 1.25 16 19 N -0.37 -4.27 3.68 -61.37 -0.23 -4.50 16 20 C 0.05 0.47 11.45 -17.23 -0.20 0.27 16 21 C -0.28 -2.68 10.80 -40.01 -0.43 -3.11 16 22 C 0.04 0.42 12.03 -17.36 -0.21 0.21 16 23 N -0.29 -3.98 12.42 30.63 0.38 -3.60 16 24 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 26 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.04 0.69 6.57 -51.93 -0.34 0.35 16 29 H 0.06 1.52 3.64 -51.93 -0.19 1.33 16 30 H 0.05 0.97 7.86 -51.93 -0.41 0.56 16 31 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 32 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 33 H 0.03 0.58 7.83 -51.93 -0.41 0.17 16 34 H 0.05 0.85 6.58 -51.93 -0.34 0.50 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.09 0.65 8.07 -51.93 -0.42 0.24 16 42 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.18 1.44 8.06 -52.48 -0.42 1.01 16 LS Contribution 358.54 15.07 5.40 5.40 Total: -1.00 -34.54 358.54 -6.50 -41.04 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -7.60 Total: -1.97 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -0.23 Total: -4.52 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: 0.58 Total: -49.90 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -0.36 Total: -8.29 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.29 Total: 18.24 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.54 -6.50 -41.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459536767.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.816 kcal (2) G-P(sol) polarization free energy of solvation -34.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds