Wall clock time and date at job start Tue Mar 31 2020 05:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42908 * 113.99362 * 2 1 4 4 C 1.53000 * 109.46703 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47454 * 64.99843 * 4 3 2 6 6 C 1.36932 * 120.00172 * 270.00201 * 5 4 3 7 7 H 1.08001 * 120.00258 * 140.20211 * 6 5 4 8 8 C 1.38811 * 119.99849 * 320.20234 * 6 5 4 9 9 N 1.31620 * 120.00152 * 156.72853 * 8 6 5 10 10 Si 1.86803 * 120.00071 * 336.71929 * 8 6 5 11 11 H 1.48501 * 109.46504 * 95.19910 * 10 8 6 12 12 H 1.48493 * 109.47488 * 215.19708 * 10 8 6 13 13 H 1.48498 * 109.46926 * 335.20195 * 10 8 6 14 14 C 1.46500 * 119.99778 * 89.99840 * 5 4 3 15 15 C 1.52998 * 109.47213 * 264.54706 * 14 5 4 16 16 C 1.52995 * 109.47290 * 182.99417 * 15 14 5 17 17 C 1.53009 * 109.47396 * 175.78999 * 16 15 14 18 18 C 1.52995 * 109.47396 * 180.02562 * 17 16 15 19 19 N 1.46497 * 109.47263 * 180.02562 * 18 17 16 20 20 C 1.34946 * 126.03975 * 125.00445 * 19 18 17 21 21 C 1.35312 * 107.74757 * 179.97438 * 20 19 18 22 22 C 1.39871 * 107.91938 * 359.97438 * 21 20 19 23 23 N 1.30837 * 108.20129 * 359.74094 * 22 21 20 24 24 H 1.09002 * 109.46999 * 60.00468 * 1 2 3 25 25 H 1.09003 * 109.46641 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47148 * 299.99707 * 1 2 3 27 27 H 1.09000 * 109.46986 * 59.99800 * 3 2 1 28 28 H 1.08997 * 109.47102 * 299.99857 * 3 2 1 29 29 H 1.09000 * 109.47198 * 305.00205 * 4 3 2 30 30 H 1.08998 * 109.47337 * 185.00045 * 4 3 2 31 31 H 0.96995 * 120.00373 * 179.97438 * 9 8 6 32 32 H 1.08994 * 109.47072 * 144.54805 * 14 5 4 33 33 H 1.08999 * 109.47193 * 24.54597 * 14 5 4 34 34 H 1.09002 * 109.47211 * 62.99192 * 15 14 5 35 35 H 1.09003 * 109.47141 * 302.99455 * 15 14 5 36 36 H 1.09004 * 109.47221 * 55.79273 * 16 15 14 37 37 H 1.08993 * 109.47175 * 295.79330 * 16 15 14 38 38 H 1.09004 * 109.46711 * 59.99963 * 17 16 15 39 39 H 1.09003 * 109.47176 * 300.00265 * 17 16 15 40 40 H 1.09006 * 109.46841 * 59.99920 * 18 17 16 41 41 H 1.09003 * 109.47175 * 300.00266 * 18 17 16 42 42 H 1.07999 * 126.12521 * 359.97438 * 20 19 18 43 43 H 1.08000 * 126.04449 * 179.97438 * 21 20 19 44 44 H 1.08004 * 125.90050 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5646 -1.2527 6 6 4.0968 -0.7968 -1.3369 7 1 3.7879 -1.3120 -2.2344 8 6 4.6167 -1.5146 -0.2686 9 7 4.3294 -2.7918 -0.1318 10 14 5.7244 -0.6682 0.9749 11 1 4.9135 -0.2195 2.1352 12 1 6.7667 -1.6192 1.4375 13 1 6.3732 0.5072 0.3403 14 6 4.2863 1.4009 -2.4148 15 6 3.0596 1.4850 -3.3251 16 6 3.4066 2.2963 -4.5750 17 6 2.2138 2.2922 -5.5333 18 6 2.5610 3.1030 -6.7834 19 7 1.4187 3.0996 -7.7006 20 6 0.8066 4.1888 -8.2104 21 6 -0.1975 3.7611 -9.0102 22 6 -0.1987 2.3626 -8.9890 23 7 0.7735 1.9649 -8.2089 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6885 1.8465 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8514 0.5684 0.8409 30 1 3.9785 2.1767 0.0889 31 1 4.6929 -3.2935 0.6145 32 1 5.1183 0.9625 -2.9658 33 1 4.5594 2.4015 -2.0797 34 1 2.2435 1.9717 -2.7910 35 1 2.7543 0.4802 -3.6173 36 1 4.2707 1.8514 -5.0686 37 1 3.6396 3.3220 -4.2893 38 1 1.3497 2.7371 -5.0396 39 1 1.9808 1.2665 -5.8190 40 1 3.4251 2.6577 -7.2768 41 1 2.7944 4.1288 -6.4980 42 1 1.0708 5.2176 -8.0149 43 1 -0.8779 4.3887 -9.5667 44 1 -0.8811 1.7216 -9.5275 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459536767.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:45 Heat of formation + Delta-G solvation = 25.748784 kcal Electronic energy + Delta-G solvation = -22019.499652 eV Core-core repulsion = 18780.667656 eV Total energy + Delta-G solvation = -3238.831996 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.96459 -39.12447 -37.74362 -36.53857 -34.18298 -33.31826 -31.33341 -30.74323 -29.69240 -27.19328 -26.95130 -25.00423 -23.56255 -22.26681 -21.99795 -21.67655 -21.27594 -18.73525 -18.02720 -17.61756 -17.06503 -16.77821 -16.34626 -15.93465 -15.77939 -15.49578 -15.32528 -14.90139 -14.60167 -14.47574 -14.08216 -13.99205 -13.56974 -13.48995 -13.20802 -13.05801 -12.84877 -12.68313 -12.40400 -12.27608 -12.07654 -11.97495 -11.78501 -11.67893 -11.50286 -11.42793 -11.23398 -10.51789 -10.36435 -10.32413 -9.47226 -8.60716 -8.08401 -5.46482 1.04990 1.34591 1.43366 1.55004 1.70746 1.99213 2.51315 3.09797 3.13011 3.49414 3.63962 3.90636 4.07059 4.12020 4.21487 4.26548 4.33994 4.40302 4.41405 4.52832 4.56651 4.59342 4.60840 4.65099 4.71713 4.80210 4.83639 4.91714 4.93263 4.99068 5.01843 5.09714 5.14440 5.18826 5.32766 5.49177 5.63533 5.79343 6.05173 6.22692 6.28941 6.57646 6.83012 7.12762 7.76107 8.16518 9.12597 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021984 B = 0.003332 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.340036 B = 8400.632442 C = 8821.316012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.400 6.400 3 C 0.046 3.954 4 C 0.124 3.876 5 N -0.611 5.611 6 C -0.233 4.233 7 H 0.022 0.978 8 C -0.018 4.018 9 N -0.952 5.952 10 Si 0.942 3.058 11 H -0.279 1.279 12 H -0.312 1.312 13 H -0.251 1.251 14 C 0.144 3.856 15 C -0.122 4.122 16 C -0.101 4.101 17 C -0.118 4.118 18 C 0.132 3.868 19 N -0.381 5.381 20 C 0.053 3.947 21 C -0.291 4.291 22 C 0.028 3.972 23 N -0.349 5.349 24 H 0.040 0.960 25 H 0.074 0.926 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.034 0.966 30 H 0.093 0.907 31 H 0.257 0.743 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.019 0.981 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.058 0.942 39 H 0.041 0.959 40 H 0.085 0.915 41 H 0.134 0.866 42 H 0.211 0.789 43 H 0.169 0.831 44 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.649 20.827 -11.659 24.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.319 6.319 3 C -0.032 4.032 4 C -0.001 4.001 5 N -0.333 5.333 6 C -0.363 4.363 7 H 0.040 0.960 8 C -0.213 4.213 9 N -0.597 5.597 10 Si 0.771 3.229 11 H -0.207 1.207 12 H -0.241 1.241 13 H -0.174 1.174 14 C 0.020 3.980 15 C -0.162 4.162 16 C -0.140 4.140 17 C -0.157 4.157 18 C 0.012 3.988 19 N -0.163 5.163 20 C -0.093 4.093 21 C -0.320 4.320 22 C -0.157 4.157 23 N -0.171 5.171 24 H 0.059 0.941 25 H 0.092 0.908 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.111 0.889 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.038 0.962 36 H 0.084 0.916 37 H 0.111 0.889 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.103 0.897 41 H 0.152 0.848 42 H 0.228 0.772 43 H 0.186 0.814 44 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -5.745 19.539 -10.990 23.143 hybrid contribution -0.479 0.041 0.328 0.582 sum -6.224 19.581 -10.662 23.148 Atomic orbital electron populations 1.22772 0.81558 1.02326 1.00063 1.88230 1.19669 1.28772 1.95207 1.23328 0.96111 0.84304 0.99484 1.21510 0.92011 0.97561 0.89046 1.44123 1.76902 1.02434 1.09874 1.18293 1.34277 0.82374 1.01374 0.95985 1.26040 0.99582 0.95334 1.00352 1.70062 1.46324 1.10784 1.32481 0.85854 0.79242 0.78440 0.79393 1.20668 1.24144 1.17448 1.21105 0.95009 0.94263 0.87672 1.21984 0.99412 0.98285 0.96544 1.21402 0.96965 1.01477 0.94151 1.21704 0.99177 0.99772 0.95027 1.21985 0.84919 1.04153 0.87759 1.49052 1.26797 1.03783 1.36715 1.23291 0.94830 0.94651 0.96514 1.21889 1.05494 0.94634 1.09960 1.24392 0.96922 0.96641 0.97747 1.77352 1.12102 1.10583 1.17112 0.94114 0.90775 0.92848 0.92544 0.93138 0.94804 0.88876 0.93399 0.94130 0.90827 0.92986 0.96185 0.91564 0.88873 0.92279 0.94057 0.89675 0.84825 0.77233 0.81394 0.78516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.00 11.01 113.37 1.25 2.25 16 2 O -0.40 -18.24 10.18 -148.98 -1.52 -19.76 16 3 C 0.05 1.73 6.28 71.98 0.45 2.18 16 4 C 0.12 5.11 4.99 86.38 0.43 5.54 16 5 N -0.61 -28.44 2.02 -702.02 -1.42 -29.86 16 6 C -0.23 -13.64 9.38 84.03 0.79 -12.85 16 7 H 0.02 1.49 8.06 -2.91 -0.02 1.47 16 8 C -0.02 -1.06 5.27 84.86 0.45 -0.61 16 9 N -0.95 -62.48 13.97 21.65 0.30 -62.17 16 10 Si 0.94 47.25 25.24 68.60 1.73 48.98 16 11 H -0.28 -13.51 6.67 99.48 0.66 -12.84 16 12 H -0.31 -15.99 7.11 99.48 0.71 -15.28 16 13 H -0.25 -11.57 7.11 99.48 0.71 -10.87 16 14 C 0.14 5.27 5.72 86.38 0.49 5.76 16 15 C -0.12 -4.02 5.51 30.59 0.17 -3.86 16 16 C -0.10 -2.30 5.21 30.60 0.16 -2.14 16 17 C -0.12 -2.73 5.41 30.60 0.17 -2.56 16 18 C 0.13 2.28 6.51 86.38 0.56 2.84 16 19 N -0.38 -8.27 3.68 -348.07 -1.28 -9.55 16 20 C 0.05 0.85 11.45 83.54 0.96 1.81 16 21 C -0.29 -4.94 10.80 21.99 0.24 -4.70 16 22 C 0.03 0.61 12.03 85.24 1.02 1.63 16 23 N -0.35 -9.66 12.42 -57.02 -0.71 -10.36 16 24 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 26 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.05 1.73 6.57 -2.39 -0.02 1.71 16 29 H 0.03 1.59 3.64 -2.39 -0.01 1.59 16 30 H 0.09 3.03 7.86 -2.39 -0.02 3.02 16 31 H 0.26 16.05 8.31 -92.71 -0.77 15.27 16 32 H 0.04 1.56 8.08 -2.39 -0.02 1.54 16 33 H 0.07 2.15 7.83 -2.39 -0.02 2.13 16 34 H 0.05 1.67 6.58 -2.39 -0.02 1.66 16 35 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 37 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 41 H 0.13 1.24 8.07 -2.39 -0.02 1.22 16 42 H 0.21 1.42 8.06 -2.91 -0.02 1.39 16 43 H 0.17 1.89 8.06 -2.91 -0.02 1.86 16 44 H 0.20 3.11 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -80.86 358.54 5.15 -75.71 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.90 Total: 11.73 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 7.14 Total: -4.71 kcal Atomic # 7 Polarization: -108.85 SS G_CDS: -3.10 Total: -111.95 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -1.52 Total: -19.76 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 1.73 Total: 48.98 kcal Total: -80.86 5.15 -75.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459536767.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.454 kcal (2) G-P(sol) polarization free energy of solvation -80.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds