Wall clock time and date at job start Tue Mar 31 2020 05:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99619 * 2 1 4 4 H 1.48497 * 109.46953 * 239.99583 * 3 2 1 5 5 H 1.48500 * 109.47313 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47322 * 119.99708 * 3 2 1 7 7 C 1.37878 * 120.00431 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99650 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99936 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.46984 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47001 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47139 * 179.97438 * 11 10 9 13 13 C 1.46854 * 111.00097 * 66.04336 * 12 11 10 14 14 C 1.53034 * 109.52313 * 174.16124 * 13 12 11 15 15 C 1.53118 * 109.28229 * 59.18353 * 14 13 12 16 16 H 1.08993 * 109.52028 * 62.24520 * 15 14 13 17 17 O 1.42894 * 109.52273 * 182.44011 * 15 14 13 18 18 C 1.53123 * 109.15651 * 302.34349 * 15 14 13 19 19 H 1.09002 * 109.50401 * 297.71497 * 18 15 14 20 20 C 1.53004 * 109.50251 * 177.63388 * 18 15 14 21 21 C 1.54266 * 110.03156 * 298.75624 * 20 18 15 22 22 C 1.54886 * 104.19610 * 217.10528 * 21 20 18 23 23 C 1.54888 * 102.74799 * 37.94284 * 22 21 20 24 24 C 1.53874 * 110.03075 * 181.59140 * 20 18 15 25 25 C 1.46853 * 111.00083 * 301.83746 * 12 11 10 26 26 H 0.96996 * 120.00726 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47012 * 59.99691 * 9 7 2 28 28 H 1.09002 * 109.46877 * 299.99969 * 9 7 2 29 29 H 1.08996 * 109.47443 * 60.00022 * 10 9 7 30 30 H 1.09005 * 109.47212 * 300.00264 * 10 9 7 31 31 H 1.08997 * 109.47174 * 60.00229 * 11 10 9 32 32 H 1.08994 * 109.46940 * 299.99702 * 11 10 9 33 33 H 1.09001 * 109.45859 * 54.14577 * 13 12 11 34 34 H 1.08997 * 109.45573 * 294.17457 * 13 12 11 35 35 H 1.09005 * 109.50224 * 299.23865 * 14 13 12 36 36 H 1.09000 * 109.53309 * 179.14414 * 14 13 12 37 37 H 0.96695 * 114.00035 * 299.67705 * 17 15 14 38 38 H 1.08997 * 110.01561 * 60.19744 * 20 18 15 39 39 H 1.09005 * 110.48913 * 335.78384 * 21 20 18 40 40 H 1.09003 * 110.48802 * 98.42330 * 21 20 18 41 41 H 1.08999 * 110.75522 * 279.62548 * 22 21 20 42 42 H 1.09001 * 110.75862 * 156.25605 * 22 21 20 43 43 H 1.09002 * 110.48458 * 203.37597 * 23 22 21 44 44 H 1.08997 * 110.60093 * 80.79025 * 23 22 21 45 45 H 1.09004 * 110.02706 * 238.56469 * 24 20 18 46 46 H 1.08990 * 110.03636 * 359.94897 * 24 20 18 47 47 H 1.08998 * 109.46314 * 65.82425 * 25 12 11 48 48 H 1.08999 * 109.45999 * 305.85398 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4806 -4.9871 -0.0001 12 7 2.4352 -6.1035 -0.0007 13 6 3.2004 -6.1424 1.2521 14 6 4.0768 -7.3967 1.2774 15 6 5.0277 -7.3734 0.0774 16 1 5.6859 -6.5078 0.1511 17 8 5.8093 -8.5696 0.0642 18 6 4.2071 -7.2840 -1.2123 19 1 3.5772 -8.1688 -1.3049 20 6 5.1510 -7.2008 -2.4136 21 6 6.0257 -5.9342 -2.3115 22 6 6.1549 -5.4429 -3.7746 23 6 4.7485 -5.7293 -4.3568 24 6 4.3388 -7.0704 -3.7140 25 6 3.3269 -6.0329 -1.1655 26 1 -0.4851 0.8400 -0.0004 27 1 0.6249 -2.5571 -0.8896 28 1 0.6242 -2.5567 0.8903 29 1 2.8722 -3.6042 0.8905 30 1 2.8722 -3.6042 -0.8895 31 1 0.8543 -5.0446 -0.8903 32 1 0.8537 -5.0451 0.8896 33 1 2.5124 -6.1629 2.0973 34 1 3.8320 -5.2566 1.3194 35 1 3.4449 -8.2833 1.2239 36 1 4.6562 -7.4179 2.2004 37 1 6.3553 -8.6913 0.8529 38 1 5.7817 -8.0888 -2.4546 39 1 5.5342 -5.1795 -1.6976 40 1 7.0063 -6.1796 -1.9035 41 1 6.9167 -6.0120 -4.3074 42 1 6.3759 -4.3760 -3.8058 43 1 4.7968 -5.8250 -5.4415 44 1 4.0492 -4.9420 -4.0751 45 1 4.5762 -7.8947 -4.3866 46 1 3.2723 -7.0674 -3.4894 47 1 3.9579 -5.1477 -1.0866 48 1 2.7308 -5.9740 -2.0761 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459789365.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:09 Heat of formation + Delta-G solvation = -82.950557 kcal Electronic energy + Delta-G solvation = -23612.860028 eV Core-core repulsion = 20472.854818 eV Total energy + Delta-G solvation = -3140.005210 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.21552 -37.57835 -36.69164 -33.91742 -32.46656 -31.49352 -30.22561 -28.73379 -27.25183 -26.22223 -24.07345 -23.10075 -21.85138 -21.23089 -20.36885 -19.54866 -18.50538 -17.34707 -16.45752 -15.99574 -15.53840 -14.87913 -14.74542 -14.65100 -14.34787 -14.16340 -13.83546 -13.43237 -13.30387 -12.83020 -12.47460 -12.27360 -12.16387 -11.82672 -11.40039 -11.36473 -11.24947 -11.09267 -11.01221 -10.98847 -10.83319 -10.76147 -10.59863 -10.54968 -10.46132 -10.18883 -10.02495 -9.76247 -9.61434 -9.42547 -9.19570 -8.35675 -7.84033 -6.00599 -4.03373 3.31405 3.36073 3.38299 4.07916 4.20682 4.44626 4.51959 4.66160 4.69796 4.87148 4.94157 5.14763 5.20379 5.34642 5.38481 5.40367 5.49396 5.51177 5.62324 5.65319 5.69015 5.74350 5.75659 5.78551 5.87070 5.94941 5.97069 5.98721 6.03324 6.12588 6.14665 6.16959 6.23218 6.28064 6.37569 6.45156 6.51730 6.60532 6.78253 7.03991 7.37250 7.43235 7.56038 7.65220 7.80468 7.98649 8.41881 9.03226 9.60663 11.10381 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016361 B = 0.004445 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.945111 B = 6297.924871 C = 7155.180187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.051 0.949 9 C 0.025 3.975 10 C -0.144 4.144 11 C 0.053 3.947 12 N -0.540 5.540 13 C 0.054 3.946 14 C -0.148 4.148 15 C 0.108 3.892 16 H 0.053 0.947 17 O -0.566 6.566 18 C -0.067 4.067 19 H 0.081 0.919 20 C -0.080 4.080 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.126 4.126 24 C -0.124 4.124 25 C 0.056 3.944 26 H 0.261 0.739 27 H 0.016 0.984 28 H 0.015 0.985 29 H 0.046 0.954 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.373 0.627 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.059 0.941 46 H 0.068 0.932 47 H 0.047 0.953 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.115 -16.381 -2.705 19.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.070 0.930 9 C -0.012 4.012 10 C -0.183 4.183 11 C -0.074 4.074 12 N -0.264 5.264 13 C -0.074 4.074 14 C -0.186 4.186 15 C 0.049 3.951 16 H 0.071 0.929 17 O -0.371 6.371 18 C -0.086 4.086 19 H 0.099 0.901 20 C -0.099 4.099 21 C -0.164 4.164 22 C -0.162 4.162 23 C -0.163 4.163 24 C -0.161 4.161 25 C -0.072 4.072 26 H 0.071 0.929 27 H 0.034 0.966 28 H 0.033 0.967 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.219 0.781 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.078 0.922 46 H 0.087 0.913 47 H 0.065 0.935 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.375 -16.784 -3.317 20.008 hybrid contribution 1.129 1.892 0.710 2.315 sum 11.505 -14.891 -2.607 18.997 Atomic orbital electron populations 1.69946 1.06020 1.26691 1.50778 1.25013 0.94827 0.99165 0.95341 0.86691 0.79633 0.83293 0.78586 1.20270 1.21222 1.20296 1.21204 0.92836 0.91193 1.50671 0.93025 1.19009 0.93852 0.91218 0.97157 1.22224 0.99994 0.95927 1.00163 1.22322 0.94463 0.88226 1.02402 1.62252 1.17752 1.44607 1.01742 1.21999 0.96104 0.96178 0.93128 1.22322 0.98586 0.99772 0.97920 1.21915 0.91331 0.86654 0.95173 0.92895 1.86504 1.61303 1.43477 1.45795 1.21174 0.95515 0.99265 0.92615 0.90082 1.21700 0.96100 0.98490 0.93631 1.22569 0.99392 0.97425 0.96984 1.22469 0.97063 1.00723 0.95930 1.22367 0.96958 0.97556 0.99458 1.22269 1.00361 0.97348 0.96142 1.22241 0.94543 0.96085 0.94295 0.92942 0.96610 0.96667 0.93520 0.93267 0.91023 0.91116 0.90655 0.94269 0.90541 0.91740 0.78107 0.90473 0.90958 0.92162 0.91932 0.91713 0.92081 0.91298 0.92247 0.91285 0.93457 0.90116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.03 0.65 4.97 -27.89 -0.14 0.51 16 10 C -0.14 -2.93 4.45 -26.73 -0.12 -3.05 16 11 C 0.05 0.91 5.36 -3.82 -0.02 0.89 16 12 N -0.54 -8.05 4.86 -234.66 -1.14 -9.19 16 13 C 0.05 0.74 5.05 -3.83 -0.02 0.72 16 14 C -0.15 -1.66 5.72 -26.65 -0.15 -1.82 16 15 C 0.11 1.23 2.77 -26.61 -0.07 1.15 16 16 H 0.05 0.62 7.11 -51.93 -0.37 0.25 16 17 O -0.57 -6.01 12.78 -35.23 -0.45 -6.46 16 18 C -0.07 -0.81 1.80 -90.53 -0.16 -0.98 16 19 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 20 C -0.08 -0.90 2.66 -89.50 -0.24 -1.14 16 21 C -0.13 -1.43 5.06 -25.07 -0.13 -1.55 16 22 C -0.12 -1.33 6.91 -24.74 -0.17 -1.50 16 23 C -0.13 -1.37 6.83 -25.07 -0.17 -1.54 16 24 C -0.12 -1.34 5.92 -25.61 -0.15 -1.49 16 25 C 0.06 0.78 3.58 -3.83 -0.01 0.76 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.95 6.68 -51.93 -0.35 0.61 16 30 H 0.05 1.00 6.50 -51.93 -0.34 0.66 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.07 1.22 8.06 -51.93 -0.42 0.80 16 33 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16 34 H 0.04 0.57 6.75 -51.93 -0.35 0.22 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.37 2.46 9.09 45.56 0.41 2.88 16 38 H 0.08 0.91 7.79 -51.93 -0.40 0.50 16 39 H 0.07 0.91 5.50 -51.93 -0.29 0.63 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.07 0.78 6.23 -51.93 -0.32 0.45 16 47 H 0.05 0.71 4.45 -51.93 -0.23 0.48 16 48 H 0.08 1.14 6.40 -51.93 -0.33 0.81 16 LS Contribution 353.82 15.07 5.33 5.33 Total: -1.00 -30.33 353.82 -10.53 -40.86 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -8.02 Total: 1.56 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: -1.97 Total: -22.58 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: -0.40 Total: -35.43 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.45 Total: -6.46 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.33 -10.53 -40.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459789365.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.089 kcal (2) G-P(sol) polarization free energy of solvation -30.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds