Wall clock time and date at job start Tue Mar 31 2020 06:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47126 * 2 1 4 4 C 1.53007 * 109.47134 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.46711 * 60.00200 * 4 3 2 6 6 C 1.52998 * 109.47293 * 300.00433 * 4 3 2 7 7 C 1.52997 * 109.47165 * 306.69878 * 6 4 3 8 8 C 1.50697 * 109.46867 * 180.02562 * 4 3 2 9 9 O 1.21274 * 120.00543 * 1.85973 * 8 4 3 10 10 N 1.34785 * 119.99526 * 181.85978 * 8 4 3 11 11 C 1.46925 * 120.62965 * 354.74654 * 10 8 4 12 12 C 1.53186 * 108.77324 * 126.67169 * 11 10 8 13 13 C 1.53035 * 109.31789 * 54.63357 * 12 11 10 14 14 C 1.50701 * 109.45463 * 178.62281 * 13 12 11 15 15 H 1.08001 * 120.00300 * 120.05800 * 14 13 12 16 16 C 1.37881 * 119.99464 * 300.06048 * 14 13 12 17 17 N 1.31508 * 120.00216 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99517 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47133 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.46826 * 119.99894 * 18 16 14 21 21 H 1.48489 * 109.47163 * 240.00147 * 18 16 14 22 22 C 1.53044 * 109.53656 * 298.63463 * 13 12 11 23 23 C 1.46921 * 120.62928 * 175.03161 * 10 8 4 24 24 H 1.08999 * 109.47241 * 59.99704 * 1 2 3 25 25 H 1.08993 * 109.47292 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46910 * 299.99756 * 1 2 3 27 27 H 1.09000 * 109.46955 * 240.00776 * 2 1 3 28 28 H 1.09002 * 109.47734 * 120.00278 * 2 1 3 29 29 H 1.09000 * 109.46570 * 60.00540 * 3 2 1 30 30 H 1.08999 * 109.47302 * 300.00258 * 3 2 1 31 31 H 1.09000 * 109.46750 * 171.73729 * 5 4 3 32 32 H 1.08999 * 109.47236 * 291.73654 * 5 4 3 33 33 H 1.09001 * 109.46898 * 51.74086 * 5 4 3 34 34 H 1.09001 * 109.46889 * 66.69617 * 6 4 3 35 35 H 1.08999 * 109.47173 * 186.69793 * 6 4 3 36 36 H 1.08999 * 109.47269 * 300.00128 * 7 6 4 37 37 H 1.08999 * 109.47144 * 59.99898 * 7 6 4 38 38 H 1.08999 * 109.47291 * 180.02562 * 7 6 4 39 39 H 1.09004 * 109.58588 * 246.45322 * 11 10 8 40 40 H 1.09000 * 109.58999 * 6.88121 * 11 10 8 41 41 H 1.09003 * 109.49619 * 294.67634 * 12 11 10 42 42 H 1.09000 * 109.50068 * 174.58721 * 12 11 10 43 43 H 1.09003 * 109.46198 * 58.65079 * 13 12 11 44 44 H 0.96996 * 119.99540 * 180.02562 * 17 16 14 45 45 H 1.09000 * 109.49772 * 301.41426 * 22 13 12 46 46 H 1.08999 * 109.52591 * 181.33033 * 22 13 12 47 47 H 1.09007 * 109.58715 * 353.11551 * 23 10 8 48 48 H 1.09000 * 109.58981 * 113.39971 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0805 0.7211 -1.2484 6 6 4.0796 0.7214 1.2501 7 6 3.4363 1.3390 2.4934 8 6 4.0723 2.8633 0.0013 9 8 3.2848 3.7850 0.0353 10 7 5.3969 3.1098 -0.0360 11 6 6.3658 2.0078 0.0383 12 6 7.3264 2.1149 -1.1500 13 6 7.9593 3.5082 -1.1654 14 6 8.9305 3.6057 -2.3136 15 1 8.7823 4.3472 -3.0847 16 6 10.0081 2.7481 -2.3796 17 7 10.1881 1.8448 -1.4410 18 14 11.2116 2.8685 -3.8033 19 1 10.7880 3.9584 -4.7187 20 1 12.5697 3.1623 -3.2798 21 1 11.2339 1.5810 -4.5428 22 6 6.8653 4.5654 -1.3318 23 6 5.8994 4.4861 -0.1454 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6766 1.9564 -0.8899 31 1 5.1605 0.8472 -1.3249 32 1 3.8428 -0.3403 -1.1776 33 1 3.6020 1.1425 -2.1324 34 1 3.8174 -0.3350 1.1922 35 1 5.1629 0.8241 1.3125 36 1 3.6984 2.3954 2.5513 37 1 2.3530 1.2363 2.4310 38 1 3.7997 0.8256 3.3836 39 1 6.9277 2.0774 0.9698 40 1 5.8388 1.0545 -0.0025 41 1 6.7769 1.9546 -2.0777 42 1 8.1082 1.3613 -1.0551 43 1 8.4879 3.6773 -0.2273 44 1 10.9465 1.2418 -1.4873 45 1 6.3201 4.3821 -2.2577 46 1 7.3184 5.5562 -1.3665 47 1 5.0647 5.1681 -0.3076 48 1 6.4211 4.7587 0.7720 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530292545.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:21 Heat of formation + Delta-G solvation = -54.141355 kcal Electronic energy + Delta-G solvation = -24179.174500 eV Core-core repulsion = 21040.418551 eV Total energy + Delta-G solvation = -3138.755949 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.60394 -37.37062 -36.46759 -33.73336 -32.89505 -31.13213 -30.52490 -29.84587 -26.56975 -26.35884 -24.19540 -23.41796 -22.33182 -22.19172 -20.42675 -19.06112 -18.10662 -16.46648 -15.95986 -15.78781 -15.55202 -14.93395 -14.57474 -14.34603 -13.79041 -13.63437 -13.39294 -13.08100 -12.97400 -12.72406 -12.65558 -12.32726 -12.08313 -11.92232 -11.79702 -11.60786 -11.45311 -11.32569 -11.06182 -10.96209 -10.82089 -10.75977 -10.61318 -10.38859 -10.34250 -10.10466 -10.07201 -9.63042 -9.19688 -9.16915 -8.78760 -8.39352 -7.94869 -6.04943 -4.10847 3.06962 3.25762 3.34503 3.38645 3.53370 4.39504 4.65329 4.70578 4.88515 5.06201 5.11951 5.18672 5.24638 5.33314 5.44411 5.60335 5.62570 5.66596 5.70166 5.77628 5.83685 5.86476 5.89396 5.96420 5.99545 6.04830 6.05961 6.10985 6.15767 6.19493 6.21914 6.26176 6.37902 6.41308 6.47132 6.55540 6.67860 6.90977 7.04828 7.15983 7.27257 7.65409 7.90697 7.99488 8.03391 8.38881 8.64734 8.92812 9.54404 11.00480 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026671 B = 0.004387 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.582066 B = 6381.494383 C = 6655.574871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.094 4.094 4 C -0.075 4.075 5 C -0.162 4.162 6 C -0.131 4.131 7 C -0.154 4.154 8 C 0.523 3.477 9 O -0.561 6.561 10 N -0.597 5.597 11 C 0.082 3.918 12 C -0.125 4.125 13 C 0.049 3.951 14 C -0.511 4.511 15 H 0.055 0.945 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.889 3.111 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.284 1.284 22 C -0.123 4.123 23 C 0.111 3.889 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.093 0.907 41 H 0.040 0.960 42 H 0.104 0.896 43 H 0.027 0.973 44 H 0.259 0.741 45 H 0.051 0.949 46 H 0.059 0.941 47 H 0.076 0.924 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.090 -5.397 5.112 15.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.132 4.132 4 C -0.078 4.078 5 C -0.219 4.219 6 C -0.168 4.168 7 C -0.211 4.211 8 C 0.311 3.689 9 O -0.440 6.440 10 N -0.329 5.329 11 C -0.040 4.040 12 C -0.163 4.163 13 C 0.030 3.970 14 C -0.549 4.549 15 H 0.073 0.927 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.718 3.282 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.161 4.161 23 C -0.011 4.011 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.111 0.889 41 H 0.059 0.941 42 H 0.122 0.878 43 H 0.045 0.955 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.094 0.906 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.358 -5.040 5.174 15.186 hybrid contribution 0.866 0.026 -0.812 1.187 sum -12.492 -5.013 4.362 14.150 Atomic orbital electron populations 1.21760 0.96144 1.01179 1.01770 1.21655 0.95524 0.97077 1.02213 1.21470 0.92231 0.96333 1.03143 1.20754 0.97014 0.92839 0.97234 1.22310 1.03502 1.00125 0.95950 1.22033 1.01995 0.99680 0.93079 1.21847 1.01026 1.01069 0.97173 1.20444 0.82028 0.90797 0.75605 1.90609 1.55279 1.46487 1.51641 1.48149 1.05243 1.08374 1.71091 1.22623 0.91192 0.89196 1.00979 1.22050 0.97168 1.03407 0.93702 1.18627 0.91285 0.89604 0.97446 1.21252 1.08338 1.16952 1.08357 0.92694 1.24950 0.97617 0.95350 0.96005 1.69840 1.29712 1.20220 1.33297 0.86575 0.81121 0.77908 0.82642 1.19853 1.21069 1.21055 1.22000 0.97180 1.00884 0.96010 1.21671 0.97743 0.82473 0.99198 0.92850 0.93027 0.92904 0.91747 0.91742 0.91071 0.91676 0.89687 0.91585 0.92270 0.90868 0.89730 0.92794 0.92220 0.92761 0.92205 0.88905 0.94143 0.87816 0.95520 0.93055 0.93036 0.92257 0.90573 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.16 0.37 -0.99 16 2 C -0.13 -1.27 5.18 -26.73 -0.14 -1.40 16 3 C -0.09 -1.19 3.03 -26.72 -0.08 -1.27 16 4 C -0.08 -1.03 0.31 -155.65 -0.05 -1.08 16 5 C -0.16 -2.13 7.49 37.16 0.28 -1.85 16 6 C -0.13 -1.56 4.06 -26.73 -0.11 -1.67 16 7 C -0.15 -1.80 9.20 37.16 0.34 -1.46 16 8 C 0.52 9.15 5.55 -10.98 -0.06 9.09 16 9 O -0.56 -11.38 15.42 5.56 0.09 -11.30 16 10 N -0.60 -10.70 2.97 -172.77 -0.51 -11.21 16 11 C 0.08 1.42 4.00 -3.71 -0.01 1.41 16 12 C -0.12 -2.67 4.82 -26.62 -0.13 -2.80 16 13 C 0.05 1.15 2.06 -91.73 -0.19 0.96 16 14 C -0.51 -13.48 8.56 -34.44 -0.29 -13.77 16 15 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 16 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 17 N -0.89 -24.07 11.30 55.43 0.63 -23.44 16 18 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C -0.12 -2.52 5.30 -26.61 -0.14 -2.66 16 23 C 0.11 2.08 6.42 -3.71 -0.02 2.05 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.62 6.62 -51.93 -0.34 0.28 16 28 H 0.06 0.60 6.50 -51.93 -0.34 0.26 16 29 H 0.07 0.95 6.26 -51.93 -0.33 0.63 16 30 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 31 H 0.08 1.25 3.91 -51.93 -0.20 1.05 16 32 H 0.07 0.72 6.86 -51.93 -0.36 0.36 16 33 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 34 H 0.07 0.74 6.77 -51.93 -0.35 0.39 16 35 H 0.08 1.07 4.69 -51.93 -0.24 0.83 16 36 H 0.05 0.74 7.44 -51.93 -0.39 0.36 16 37 H 0.06 0.66 6.19 -51.93 -0.32 0.33 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.09 1.40 2.73 -51.93 -0.14 1.26 16 41 H 0.04 0.88 7.50 -51.93 -0.39 0.49 16 42 H 0.10 2.47 6.03 -51.93 -0.31 2.16 16 43 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 45 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.08 1.43 7.04 -51.93 -0.37 1.06 16 48 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 345.86 15.07 5.21 5.21 Total: -1.00 -28.23 345.86 -8.21 -36.45 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -8.27 Total: 2.56 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -0.33 Total: -13.91 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.11 Total: -34.65 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.23 -8.21 -36.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530292545.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.696 kcal (2) G-P(sol) polarization free energy of solvation -28.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds