Wall clock time and date at job start Tue Mar 31 2020 06:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46950 * 2 1 4 4 C 1.53000 * 109.46950 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47364 * 300.00139 * 4 3 2 6 6 C 1.53000 * 109.47322 * 60.00141 * 4 3 2 7 7 C 1.53005 * 109.47091 * 57.57825 * 6 4 3 8 8 C 1.50701 * 109.47385 * 180.02562 * 4 3 2 9 9 O 1.21288 * 119.99619 * 6.58025 * 8 4 3 10 10 N 1.34771 * 120.00391 * 186.58485 * 8 4 3 11 11 C 1.46929 * 120.63047 * 354.79099 * 10 8 4 12 12 C 1.52758 * 109.01399 * 233.58750 * 11 10 8 13 13 C 1.53046 * 109.38246 * 305.59202 * 12 11 10 14 14 C 1.50697 * 109.44577 * 181.24786 * 13 12 11 15 15 H 1.07992 * 120.00464 * 239.93223 * 14 13 12 16 16 C 1.37879 * 119.99753 * 59.94532 * 14 13 12 17 17 N 1.31517 * 120.00145 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99710 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47222 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47199 * 119.99808 * 18 16 14 21 21 H 1.48499 * 109.47135 * 239.99255 * 18 16 14 22 22 C 1.53038 * 109.53792 * 61.23447 * 13 12 11 23 23 C 1.46927 * 120.63265 * 175.07877 * 10 8 4 24 24 H 1.08995 * 109.46635 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47012 * 299.99905 * 1 2 3 26 26 H 1.09006 * 109.46923 * 60.00158 * 1 2 3 27 27 H 1.09000 * 109.47467 * 240.00714 * 2 1 3 28 28 H 1.08997 * 109.47704 * 119.99945 * 2 1 3 29 29 H 1.08999 * 109.47185 * 60.00201 * 3 2 1 30 30 H 1.08997 * 109.46933 * 299.99668 * 3 2 1 31 31 H 1.08997 * 109.47291 * 314.35685 * 5 4 3 32 32 H 1.09004 * 109.47434 * 194.35154 * 5 4 3 33 33 H 1.09001 * 109.47272 * 74.34898 * 5 4 3 34 34 H 1.08996 * 109.47351 * 177.58121 * 6 4 3 35 35 H 1.09004 * 109.47009 * 297.58054 * 6 4 3 36 36 H 1.08995 * 109.46792 * 300.00107 * 7 6 4 37 37 H 1.08996 * 109.46664 * 60.00231 * 7 6 4 38 38 H 1.09000 * 109.46995 * 179.97438 * 7 6 4 39 39 H 1.09002 * 109.58441 * 353.43035 * 11 10 8 40 40 H 1.09007 * 109.58365 * 113.84478 * 11 10 8 41 41 H 1.08994 * 109.56702 * 185.55055 * 12 11 10 42 42 H 1.09004 * 109.38089 * 65.51183 * 12 11 10 43 43 H 1.08993 * 109.45641 * 301.21571 * 13 12 11 44 44 H 0.97001 * 119.99975 * 180.02562 * 17 16 14 45 45 H 1.09000 * 109.49934 * 178.68400 * 22 13 12 46 46 H 1.09003 * 109.52340 * 58.60546 * 22 13 12 47 47 H 1.08997 * 109.58752 * 246.15225 * 23 10 8 48 48 H 1.08996 * 109.58764 * 6.43467 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0795 0.7215 1.2502 6 6 4.0806 0.7212 -1.2483 7 6 3.5219 1.4062 -2.4971 8 6 4.0724 2.8634 0.0013 9 8 3.2907 3.7829 0.1216 10 7 5.3902 3.1123 -0.1319 11 6 6.3608 2.0097 -0.1644 12 6 7.4341 2.2602 0.8933 13 6 8.0481 3.6451 0.6758 14 6 9.1283 3.8814 1.6996 15 1 9.0494 4.7111 2.3863 16 6 10.2177 3.0382 1.7595 17 7 10.3137 2.0276 0.9234 18 14 11.5571 3.3315 3.0281 19 1 11.2147 4.5250 3.8426 20 1 11.6699 2.1439 3.9125 21 1 12.8518 3.5590 2.3374 22 6 6.9634 4.7146 0.8230 23 6 5.8842 4.4917 -0.2412 24 1 -0.3632 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.5229 1.0669 2.1214 32 1 5.1393 0.9368 1.3872 33 1 3.9393 -0.3530 1.1322 34 1 5.1697 0.7586 -1.2698 35 1 3.7531 -0.3183 -1.2268 36 1 2.4328 1.3688 -2.4756 37 1 3.8494 2.4456 -2.5185 38 1 3.8860 0.8926 -3.3869 39 1 5.8525 1.0691 0.0483 40 1 6.8261 1.9614 -1.1489 41 1 8.2115 1.5006 0.8115 42 1 6.9830 2.2138 1.8845 43 1 8.4777 3.6988 -0.3244 44 1 11.0799 1.4342 0.9658 45 1 7.4058 5.7020 0.6911 46 1 6.5162 4.6459 1.8147 47 1 6.3100 4.6500 -1.2320 48 1 5.0613 5.1883 -0.0816 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530292547.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:23 Heat of formation + Delta-G solvation = -55.359429 kcal Electronic energy + Delta-G solvation = -24167.438100 eV Core-core repulsion = 21028.629330 eV Total energy + Delta-G solvation = -3138.808769 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.60407 -37.35882 -36.45414 -33.76123 -32.88969 -31.06985 -30.54031 -29.89311 -26.60790 -26.36243 -24.16378 -23.42894 -22.34648 -22.19101 -20.43866 -19.05877 -18.12308 -16.47274 -15.97545 -15.73878 -15.50269 -14.94342 -14.56903 -14.33827 -13.82921 -13.61583 -13.36543 -13.09956 -12.96245 -12.72968 -12.66233 -12.35278 -12.06857 -11.94264 -11.83136 -11.63194 -11.49784 -11.33708 -11.05982 -10.95090 -10.83711 -10.77916 -10.61069 -10.37293 -10.34257 -10.10700 -10.07640 -9.62552 -9.19536 -9.14910 -8.80087 -8.38909 -7.94242 -6.04645 -4.10427 3.07325 3.26012 3.34720 3.38992 3.52844 4.39858 4.64520 4.69669 4.87703 5.05992 5.11198 5.17747 5.24884 5.33204 5.43461 5.59932 5.62142 5.66188 5.70180 5.77237 5.82751 5.83474 5.89162 5.96417 5.97685 6.04685 6.05823 6.10205 6.15734 6.19585 6.21037 6.26814 6.38457 6.40135 6.47668 6.54654 6.67831 6.92050 7.05185 7.16515 7.27572 7.65788 7.91153 7.99640 8.03748 8.39416 8.64982 8.93212 9.54755 11.00817 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028058 B = 0.004326 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.697191 B = 6471.286364 C = 6728.480931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.094 4.094 4 C -0.075 4.075 5 C -0.157 4.157 6 C -0.134 4.134 7 C -0.153 4.153 8 C 0.524 3.476 9 O -0.561 6.561 10 N -0.597 5.597 11 C 0.085 3.915 12 C -0.125 4.125 13 C 0.049 3.951 14 C -0.511 4.511 15 H 0.055 0.945 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.890 3.110 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.285 1.285 22 C -0.123 4.123 23 C 0.111 3.889 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.104 0.896 42 H 0.038 0.962 43 H 0.027 0.973 44 H 0.259 0.741 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.058 0.942 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.505 -5.932 -4.290 15.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.131 4.131 4 C -0.078 4.078 5 C -0.214 4.214 6 C -0.171 4.171 7 C -0.210 4.210 8 C 0.312 3.688 9 O -0.440 6.440 10 N -0.328 5.328 11 C -0.037 4.037 12 C -0.164 4.164 13 C 0.031 3.969 14 C -0.549 4.549 15 H 0.073 0.927 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.718 3.282 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.161 4.161 23 C -0.012 4.012 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.122 0.878 42 H 0.057 0.943 43 H 0.045 0.955 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.773 -5.580 -4.275 15.463 hybrid contribution 0.940 0.117 0.705 1.181 sum -12.833 -5.463 -3.571 14.397 Atomic orbital electron populations 1.21761 0.96135 1.01183 1.01777 1.21647 0.95532 0.97058 1.02196 1.21467 0.92206 0.96340 1.03132 1.20756 0.97016 0.92852 0.97224 1.22205 1.02908 1.00272 0.96031 1.22105 1.02612 0.99353 0.93000 1.21826 1.01125 1.00848 0.97250 1.20433 0.81997 0.90760 0.75649 1.90614 1.55481 1.46643 1.51276 1.48146 1.05685 1.08105 1.70907 1.22495 0.91051 0.89061 1.01046 1.21971 0.96163 1.03311 0.94941 1.18625 0.91333 0.89575 0.97413 1.21252 1.04399 1.12174 1.17045 0.92700 1.24952 0.97970 0.95199 0.95824 1.69844 1.29968 1.16288 1.36994 0.86572 0.81925 0.78147 0.81581 1.19853 1.21057 1.21069 1.21993 0.96276 1.00679 0.97131 1.21673 0.97619 0.82477 0.99394 0.93025 0.92833 0.92910 0.91743 0.91776 0.91470 0.91311 0.92148 0.90226 0.91491 0.89445 0.90940 0.92414 0.92814 0.92697 0.89122 0.92207 0.87758 0.94302 0.95515 0.93063 0.92304 0.93025 0.92413 0.90496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.13 -1.25 5.26 -26.73 -0.14 -1.39 16 3 C -0.09 -1.17 3.12 -26.73 -0.08 -1.26 16 4 C -0.08 -1.02 0.30 -155.66 -0.05 -1.07 16 5 C -0.16 -2.02 7.28 37.16 0.27 -1.75 16 6 C -0.13 -1.59 4.16 -26.73 -0.11 -1.70 16 7 C -0.15 -1.81 9.28 37.16 0.34 -1.47 16 8 C 0.52 9.14 5.33 -10.99 -0.06 9.08 16 9 O -0.56 -11.44 15.40 5.55 0.09 -11.35 16 10 N -0.60 -10.67 2.97 -173.03 -0.51 -11.18 16 11 C 0.08 1.48 3.80 -3.93 -0.01 1.47 16 12 C -0.13 -2.70 4.96 -26.83 -0.13 -2.84 16 13 C 0.05 1.16 2.07 -91.73 -0.19 0.97 16 14 C -0.51 -13.53 8.56 -34.44 -0.29 -13.83 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 17 N -0.89 -24.13 11.30 55.43 0.63 -23.50 16 18 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 22 C -0.12 -2.54 5.30 -26.61 -0.14 -2.68 16 23 C 0.11 2.06 6.44 -3.71 -0.02 2.03 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.59 6.49 -51.93 -0.34 0.26 16 28 H 0.06 0.61 6.77 -51.93 -0.35 0.26 16 29 H 0.07 0.93 8.03 -51.93 -0.42 0.52 16 30 H 0.07 0.91 6.38 -51.93 -0.33 0.58 16 31 H 0.06 0.78 8.06 -51.93 -0.42 0.36 16 32 H 0.08 1.15 4.82 -51.93 -0.25 0.90 16 33 H 0.07 0.71 7.16 -51.93 -0.37 0.33 16 34 H 0.09 1.11 4.39 -51.93 -0.23 0.88 16 35 H 0.07 0.73 6.54 -51.93 -0.34 0.39 16 36 H 0.06 0.64 6.38 -51.93 -0.33 0.31 16 37 H 0.05 0.74 7.29 -51.93 -0.38 0.37 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.09 1.37 2.82 -51.93 -0.15 1.22 16 40 H 0.06 1.04 8.00 -51.92 -0.42 0.63 16 41 H 0.10 2.50 6.03 -51.93 -0.31 2.19 16 42 H 0.04 0.86 7.90 -51.93 -0.41 0.45 16 43 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 45 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.08 1.44 7.00 -51.93 -0.36 1.08 16 LS Contribution 346.86 15.07 5.23 5.23 Total: -1.00 -28.39 346.86 -8.27 -36.66 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -8.33 Total: 2.29 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -0.35 Total: -13.86 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.11 Total: -34.68 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.39 -8.27 -36.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530292547.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.701 kcal (2) G-P(sol) polarization free energy of solvation -28.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds