Wall clock time and date at job start Tue Mar 31 2020 06:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47220 * 2 1 4 4 C 1.53012 * 109.46888 * 64.99903 * 3 2 1 5 5 C 1.53003 * 109.46879 * 186.83302 * 4 3 2 6 6 C 1.52993 * 109.47345 * 184.99609 * 3 2 1 7 7 H 1.09004 * 109.47590 * 187.16614 * 6 3 2 8 8 C 1.52998 * 109.47677 * 307.16802 * 6 3 2 9 9 C 1.50703 * 109.46820 * 67.16576 * 6 3 2 10 10 O 1.21284 * 120.00169 * 345.44620 * 9 6 3 11 11 N 1.34781 * 120.00074 * 165.44031 * 9 6 3 12 12 C 1.37097 * 120.00209 * 185.76115 * 11 9 6 13 13 H 1.08003 * 119.99986 * 223.47911 * 12 11 9 14 14 C 1.38949 * 119.99916 * 43.47680 * 12 11 9 15 15 N 1.31416 * 120.00104 * 9.37548 * 14 12 11 16 16 Si 1.86800 * 119.99996 * 189.37501 * 14 12 11 17 17 H 1.48494 * 109.47251 * 90.00101 * 16 14 12 18 18 H 1.48496 * 109.47210 * 210.00415 * 16 14 12 19 19 H 1.48499 * 109.47028 * 329.99806 * 16 14 12 20 20 C 1.46504 * 119.99995 * 5.75899 * 11 9 6 21 21 C 1.54258 * 110.03467 * 238.56899 * 20 11 9 22 22 C 1.54968 * 104.16182 * 217.13928 * 21 20 11 23 23 C 1.54890 * 102.77441 * 37.88227 * 22 21 20 24 24 C 1.53873 * 110.03218 * 121.34693 * 20 11 9 25 25 H 1.08998 * 109.47232 * 60.00256 * 1 2 3 26 26 H 1.09001 * 109.46897 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47142 * 299.99387 * 1 2 3 28 28 H 1.08999 * 109.47456 * 239.99899 * 2 1 3 29 29 H 1.09003 * 109.47322 * 120.00231 * 2 1 3 30 30 H 1.08996 * 109.47342 * 305.00180 * 3 2 1 31 31 H 1.08999 * 109.46930 * 306.83146 * 4 3 2 32 32 H 1.08999 * 109.46523 * 66.83786 * 4 3 2 33 33 H 1.08994 * 109.47204 * 303.26454 * 5 4 3 34 34 H 1.08997 * 109.46563 * 63.26338 * 5 4 3 35 35 H 1.08999 * 109.46450 * 183.25887 * 5 4 3 36 36 H 1.09004 * 109.46967 * 64.48595 * 8 6 3 37 37 H 1.08998 * 109.47652 * 184.48788 * 8 6 3 38 38 H 1.09000 * 109.46626 * 304.49411 * 8 6 3 39 39 H 0.96997 * 119.99808 * 184.99188 * 15 14 12 40 40 H 1.09006 * 110.01200 * 359.95506 * 20 11 9 41 41 H 1.09005 * 110.48795 * 335.77911 * 21 20 11 42 42 H 1.08999 * 110.49468 * 98.42540 * 21 20 11 43 43 H 1.09004 * 110.71365 * 279.57248 * 22 21 20 44 44 H 1.08994 * 110.92565 * 156.29261 * 22 21 20 45 45 H 1.09008 * 110.48333 * 203.40849 * 23 22 21 46 46 H 1.09002 * 110.59732 * 80.82543 * 23 22 21 47 47 H 1.09002 * 110.03351 * 238.57454 * 24 20 11 48 48 H 1.08996 * 110.03146 * 0.02562 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1265 1.3075 5 6 1.9940 3.6123 1.2380 6 6 3.5648 1.4443 -0.1256 7 1 3.9387 2.4602 0.0019 8 6 4.1666 0.5405 0.9523 9 6 3.9572 0.9318 -1.4874 10 8 3.1422 0.3559 -2.1766 11 7 5.2139 1.1135 -1.9395 12 6 5.5399 0.7540 -3.2217 13 1 6.4649 0.2320 -3.4176 14 6 4.6801 1.0611 -4.2692 15 7 3.6508 1.8519 -4.0641 16 14 4.9876 0.3500 -5.9689 17 1 4.2799 -0.9491 -6.0974 18 1 4.4823 1.2929 -6.9988 19 1 6.4451 0.1410 -6.1619 20 6 6.2315 1.6952 -1.0607 21 6 6.8036 2.9807 -1.6930 22 6 8.3077 2.9492 -1.3214 23 6 8.6593 1.4457 -1.4441 24 6 7.4109 0.7197 -0.9019 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.6054 1.9815 -0.8417 31 1 0.5608 2.0188 1.4563 32 1 2.1657 1.6631 2.1393 33 1 3.0588 3.7196 1.0313 34 1 1.4198 4.0878 0.4429 35 1 1.7589 4.0876 2.1903 36 1 3.8562 -0.4897 0.7774 37 1 5.2540 0.6038 0.9141 38 1 3.8180 0.8634 1.9332 39 1 3.0103 2.0086 -4.7755 40 1 5.7985 1.9194 -0.0858 41 1 6.6779 2.9619 -2.7756 42 1 6.3231 3.8618 -1.2676 43 1 8.4600 3.2995 -0.3005 44 1 8.8946 3.5417 -2.0232 45 1 9.5329 1.2076 -0.8370 46 1 8.8349 1.1767 -2.4857 47 1 7.5508 0.4711 0.1501 48 1 7.2263 -0.1863 -1.4791 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534888172.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:38 Heat of formation + Delta-G solvation = -54.079948 kcal Electronic energy + Delta-G solvation = -24696.545331 eV Core-core repulsion = 21557.792045 eV Total energy + Delta-G solvation = -3138.753287 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.34997 -37.47257 -35.87350 -33.13634 -31.97290 -31.23484 -30.54005 -28.03468 -26.79254 -25.80245 -25.03884 -23.08323 -22.12808 -20.10651 -19.92576 -19.39239 -18.01348 -16.40417 -15.89468 -15.23035 -14.63628 -14.48482 -14.10315 -14.09687 -13.67542 -13.50390 -13.22305 -12.86339 -12.71623 -12.44215 -12.17068 -11.72430 -11.66580 -11.28289 -11.23920 -11.11746 -11.05587 -10.90518 -10.71307 -10.60151 -10.55809 -10.47483 -10.43048 -10.32039 -10.14885 -10.00747 -9.82293 -9.69828 -9.66295 -9.51474 -8.64091 -7.69156 -6.89140 -5.93963 -3.75307 3.35731 3.41328 3.43331 4.33661 4.52379 4.98944 5.22369 5.26489 5.29039 5.33305 5.35944 5.52858 5.59631 5.64779 5.78108 5.83350 5.86065 5.92297 5.98207 6.01195 6.09005 6.12988 6.16276 6.18563 6.27883 6.29077 6.31912 6.37210 6.42913 6.44225 6.47519 6.48941 6.53383 6.61146 6.62792 6.66533 6.75918 6.85801 6.91350 7.03572 7.15032 7.22244 7.31222 7.74204 8.41651 9.23834 9.36372 9.84193 10.52137 11.11428 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013437 B = 0.007882 C = 0.005762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.262043 B = 3551.703307 C = 4857.943956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 C -0.059 4.059 4 C -0.123 4.123 5 C -0.153 4.153 6 C -0.104 4.104 7 H 0.074 0.926 8 C -0.145 4.145 9 C 0.489 3.511 10 O -0.526 6.526 11 N -0.456 5.456 12 C -0.327 4.327 13 H 0.074 0.926 14 C 0.062 3.938 15 N -0.835 5.835 16 Si 0.904 3.096 17 H -0.281 1.281 18 H -0.289 1.289 19 H -0.275 1.275 20 C 0.127 3.873 21 C -0.127 4.127 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.131 4.131 25 H 0.051 0.949 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.097 0.903 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.260 0.740 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.050 0.950 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.064 0.936 47 H 0.051 0.949 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.280 1.720 10.409 10.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C -0.078 4.078 4 C -0.161 4.161 5 C -0.210 4.210 6 C -0.126 4.126 7 H 0.092 0.908 8 C -0.202 4.202 9 C 0.277 3.723 10 O -0.403 6.403 11 N -0.178 5.178 12 C -0.455 4.455 13 H 0.091 0.909 14 C -0.147 4.147 15 N -0.470 5.470 16 Si 0.732 3.268 17 H -0.207 1.207 18 H -0.215 1.215 19 H -0.200 1.200 20 C 0.022 3.978 21 C -0.165 4.165 22 C -0.161 4.161 23 C -0.155 4.155 24 C -0.169 4.169 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.115 0.885 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.083 0.917 47 H 0.069 0.931 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.713 1.554 9.930 10.196 hybrid contribution 0.128 -0.126 -0.865 0.883 sum 1.840 1.428 9.065 9.360 Atomic orbital electron populations 1.21785 0.97346 1.00382 1.00876 1.21815 0.94491 0.96995 1.03177 1.20848 0.93906 0.96371 0.96664 1.21718 1.00657 0.95349 0.98326 1.21821 1.01928 0.96566 1.00667 1.21270 0.96167 0.99614 0.95566 0.90802 1.21949 1.00457 1.00203 0.97624 1.19752 0.83553 0.82699 0.86320 1.90419 1.49449 1.42770 1.57641 1.43363 1.07362 1.56116 1.10943 1.18834 1.08071 1.36911 0.81633 0.90861 1.25189 0.96553 0.94576 0.98343 1.69843 1.11966 1.31881 1.33313 0.86328 0.78107 0.78934 0.83478 1.20706 1.21476 1.20015 1.21787 0.90029 0.92137 0.93884 1.22680 0.93428 0.96944 1.03491 1.22449 0.97262 0.96300 1.00043 1.22259 0.96937 0.95363 1.00940 1.22469 0.94941 0.99991 0.99544 0.93029 0.93803 0.93688 0.88457 0.93479 0.90865 0.92271 0.92316 0.92482 0.92913 0.93619 0.92325 0.92488 0.92857 0.92950 0.90887 0.89315 0.93138 0.92570 0.92444 0.92995 0.91674 0.93051 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.68 37.16 0.36 -1.93 16 2 C -0.13 -2.29 4.48 -26.73 -0.12 -2.41 16 3 C -0.06 -1.07 1.29 -90.62 -0.12 -1.18 16 4 C -0.12 -1.77 5.21 -26.72 -0.14 -1.91 16 5 C -0.15 -2.09 9.77 37.16 0.36 -1.73 16 6 C -0.10 -2.00 1.55 -91.77 -0.14 -2.14 16 7 H 0.07 1.40 5.40 -51.93 -0.28 1.12 16 8 C -0.15 -2.34 8.00 37.16 0.30 -2.05 16 9 C 0.49 11.97 5.89 -10.98 -0.06 11.90 16 10 O -0.53 -14.86 11.44 5.55 0.06 -14.79 16 11 N -0.46 -10.96 2.47 -106.54 -0.26 -11.22 16 12 C -0.33 -8.71 7.43 -14.93 -0.11 -8.82 16 13 H 0.07 1.92 7.09 -52.48 -0.37 1.55 16 14 C 0.06 1.73 4.68 -17.47 -0.08 1.65 16 15 N -0.84 -24.45 11.20 55.50 0.62 -23.82 16 16 Si 0.90 21.89 29.57 -169.99 -5.03 16.86 16 17 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 C 0.13 2.46 2.45 -66.81 -0.16 2.30 16 21 C -0.13 -2.37 6.42 -25.03 -0.16 -2.53 16 22 C -0.12 -1.85 6.91 -24.70 -0.17 -2.02 16 23 C -0.12 -1.80 6.83 -25.07 -0.17 -1.98 16 24 C -0.13 -2.26 6.08 -25.62 -0.16 -2.41 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.61 6.43 -51.93 -0.33 0.28 16 28 H 0.10 2.14 5.59 -51.93 -0.29 1.85 16 29 H 0.05 0.77 6.74 -51.93 -0.35 0.42 16 30 H 0.07 1.56 8.10 -51.93 -0.42 1.14 16 31 H 0.06 0.80 6.27 -51.93 -0.33 0.48 16 32 H 0.06 0.79 6.29 -51.93 -0.33 0.46 16 33 H 0.06 0.81 6.36 -51.93 -0.33 0.48 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.99 6.72 -51.93 -0.35 0.64 16 37 H 0.06 0.89 5.83 -51.93 -0.30 0.59 16 38 H 0.05 0.73 6.33 -51.93 -0.33 0.40 16 39 H 0.26 7.46 8.32 -40.82 -0.34 7.12 16 40 H 0.07 1.31 4.29 -51.93 -0.22 1.08 16 41 H 0.09 1.96 7.06 -51.93 -0.37 1.60 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 46 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 47 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.07 1.45 6.92 -51.93 -0.36 1.09 16 LS Contribution 347.78 15.07 5.24 5.24 Total: -1.00 -30.08 347.78 -8.26 -38.34 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -8.32 Total: 4.65 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -0.58 Total: -15.25 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.36 Total: -35.05 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: 0.06 Total: -14.79 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.08 -8.26 -38.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534888172.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.735 kcal (2) G-P(sol) polarization free energy of solvation -30.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds