Wall clock time and date at job start Tue Mar 31 2020 06:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47141 * 2 1 4 4 C 1.52993 * 109.47237 * 65.00032 * 3 2 1 5 5 C 1.52998 * 109.47124 * 64.07298 * 4 3 2 6 6 C 1.53001 * 109.47067 * 185.00110 * 3 2 1 7 7 H 1.08998 * 109.47451 * 301.36928 * 6 3 2 8 8 C 1.53006 * 109.46930 * 181.36649 * 6 3 2 9 9 C 1.50702 * 109.47166 * 61.37081 * 6 3 2 10 10 O 1.21296 * 120.00123 * 24.99236 * 9 6 3 11 11 N 1.34771 * 119.99956 * 204.99462 * 9 6 3 12 12 C 1.37096 * 120.00268 * 183.27964 * 11 9 6 13 13 H 1.07999 * 120.00606 * 227.68788 * 12 11 9 14 14 C 1.38952 * 119.99978 * 47.69075 * 12 11 9 15 15 N 1.31415 * 119.99730 * 9.76392 * 14 12 11 16 16 Si 1.86801 * 120.00187 * 189.76517 * 14 12 11 17 17 H 1.48502 * 109.46857 * 90.00226 * 16 14 12 18 18 H 1.48502 * 109.46930 * 209.99948 * 16 14 12 19 19 H 1.48490 * 109.47095 * 329.99580 * 16 14 12 20 20 C 1.46509 * 120.00075 * 3.28030 * 11 9 6 21 21 C 1.55237 * 110.57921 * 228.57324 * 20 11 9 22 22 C 1.54892 * 102.58633 * 203.33583 * 21 20 11 23 23 C 1.54268 * 104.30987 * 37.93483 * 22 21 20 24 24 C 1.53870 * 106.60112 * 336.32433 * 23 22 21 25 25 H 1.08998 * 109.46873 * 59.99829 * 1 2 3 26 26 H 1.09003 * 109.46885 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46763 * 300.00037 * 1 2 3 28 28 H 1.09001 * 109.47126 * 240.00294 * 2 1 3 29 29 H 1.08995 * 109.47369 * 120.00083 * 2 1 3 30 30 H 1.09002 * 109.47179 * 304.99764 * 3 2 1 31 31 H 1.09002 * 109.47507 * 184.07108 * 4 3 2 32 32 H 1.09003 * 109.47118 * 304.07355 * 4 3 2 33 33 H 1.08993 * 109.47433 * 64.46269 * 5 4 3 34 34 H 1.09005 * 109.47562 * 184.46344 * 5 4 3 35 35 H 1.09001 * 109.47321 * 304.46336 * 5 4 3 36 36 H 1.09002 * 109.47046 * 185.68659 * 8 6 3 37 37 H 1.08995 * 109.47001 * 305.68624 * 8 6 3 38 38 H 1.08995 * 109.46997 * 65.68709 * 8 6 3 39 39 H 0.97000 * 119.99746 * 180.02562 * 15 14 12 40 40 H 1.09000 * 110.43151 * 351.16364 * 20 11 9 41 41 H 1.08997 * 110.89537 * 85.05156 * 21 20 11 42 42 H 1.09000 * 110.76967 * 321.56799 * 21 20 11 43 43 H 1.08996 * 110.48831 * 279.19200 * 22 21 20 44 44 H 1.09000 * 110.48766 * 156.67863 * 22 21 20 45 45 H 1.09003 * 110.03261 * 95.60754 * 23 22 21 46 46 H 1.09004 * 110.03289 * 216.98535 * 23 22 21 47 47 H 1.09003 * 110.03640 * 119.28263 * 24 23 22 48 48 H 1.09003 * 110.03114 * 240.66748 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1265 1.3073 5 6 2.3269 1.4316 2.4819 6 6 3.5649 1.4443 -0.1258 7 1 3.9985 0.8845 0.7029 8 6 4.0777 2.8855 -0.0915 9 6 3.9622 0.8007 -1.4292 10 8 3.1874 0.7922 -2.3624 11 7 5.1784 0.2344 -1.5579 12 6 5.5656 -0.2915 -2.7634 13 1 6.0057 -1.2768 -2.8064 14 6 5.3919 0.4433 -3.9298 15 7 5.0384 1.7073 -3.8637 16 14 5.6609 -0.3655 -5.5920 17 1 4.3837 -0.9550 -6.0681 18 1 6.1305 0.6513 -6.5671 19 1 6.6822 -1.4356 -5.4623 20 6 6.0867 0.1807 -0.4096 21 6 7.5016 0.6789 -0.8093 22 6 8.4083 0.0066 0.2513 23 6 7.7863 -1.3904 0.4543 24 6 6.3102 -1.2798 0.0340 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6054 1.9815 -0.8418 31 1 1.9351 3.1741 1.2773 32 1 0.5544 2.0614 1.4319 33 1 3.4055 1.5650 2.3990 34 1 1.9780 1.8670 3.4183 35 1 2.0901 0.3678 2.4653 36 1 5.1509 2.8938 -0.2819 37 1 3.5683 3.4707 -0.8570 38 1 3.8793 3.3185 0.8889 39 1 4.9167 2.2201 -4.6780 40 1 5.6925 0.7739 0.4154 41 1 7.5654 1.7648 -0.7396 42 1 7.7622 0.3391 -1.8117 43 1 8.3890 0.5718 1.1831 44 1 9.4294 -0.0807 -0.1198 45 1 8.2987 -2.1217 -0.1708 46 1 7.8561 -1.6815 1.5025 47 1 6.1063 -1.9573 -0.7951 48 1 5.6628 -1.5176 0.8781 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534888173.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:40 Heat of formation + Delta-G solvation = -60.892786 kcal Electronic energy + Delta-G solvation = -24700.865622 eV Core-core repulsion = 21561.816909 eV Total energy + Delta-G solvation = -3139.048713 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.29175 -37.48817 -36.01219 -33.21800 -32.05432 -31.15612 -30.33491 -28.03585 -26.71993 -26.04658 -25.12412 -23.50562 -21.87923 -19.93872 -19.82567 -19.47550 -17.88561 -16.58159 -15.98487 -15.20997 -14.98611 -14.74439 -14.21574 -13.98817 -13.53671 -13.21283 -13.00936 -12.77211 -12.69459 -12.44176 -12.27735 -11.97052 -11.79983 -11.49206 -11.35092 -11.03780 -10.99017 -10.89129 -10.81280 -10.72758 -10.66189 -10.45943 -10.43301 -10.32057 -10.15146 -9.98485 -9.85822 -9.81222 -9.69411 -9.50127 -8.59825 -7.78011 -6.89734 -5.98212 -3.78341 3.34683 3.40734 3.43033 4.30481 4.52055 4.96980 5.17226 5.22885 5.25921 5.27872 5.31845 5.47119 5.55893 5.63328 5.67160 5.75775 5.86807 5.93546 5.99135 6.00975 6.07909 6.10021 6.14941 6.16718 6.19315 6.24035 6.26939 6.34967 6.38530 6.43581 6.46386 6.47999 6.49085 6.59829 6.61905 6.65101 6.71944 6.85674 6.90176 7.00395 7.03090 7.08021 7.24519 7.73583 8.43076 9.24237 9.34512 9.82135 10.50258 11.10203 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013208 B = 0.007884 C = 0.005867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.444120 B = 3550.725139 C = 4771.241653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C -0.065 4.065 4 C -0.121 4.121 5 C -0.154 4.154 6 C -0.106 4.106 7 H 0.073 0.927 8 C -0.131 4.131 9 C 0.496 3.504 10 O -0.534 6.534 11 N -0.454 5.454 12 C -0.332 4.332 13 H 0.072 0.928 14 C 0.068 3.932 15 N -0.838 5.838 16 Si 0.905 3.095 17 H -0.280 1.280 18 H -0.288 1.288 19 H -0.275 1.275 20 C 0.130 3.870 21 C -0.119 4.119 22 C -0.125 4.125 23 C -0.118 4.118 24 C -0.135 4.135 25 H 0.052 0.948 26 H 0.045 0.955 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.044 0.956 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.260 0.740 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.087 0.913 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.073 0.927 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.255 -0.758 11.737 11.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C -0.084 4.084 4 C -0.158 4.158 5 C -0.212 4.212 6 C -0.128 4.128 7 H 0.091 0.909 8 C -0.189 4.189 9 C 0.283 3.717 10 O -0.411 6.411 11 N -0.176 5.176 12 C -0.460 4.460 13 H 0.089 0.911 14 C -0.142 4.142 15 N -0.472 5.472 16 Si 0.733 3.267 17 H -0.206 1.206 18 H -0.214 1.214 19 H -0.200 1.200 20 C 0.024 3.976 21 C -0.158 4.158 22 C -0.163 4.163 23 C -0.156 4.156 24 C -0.174 4.174 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.105 0.895 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.092 0.908 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.713 -0.592 11.116 11.155 hybrid contribution 0.274 -0.278 -0.837 0.923 sum -0.439 -0.870 10.280 10.326 Atomic orbital electron populations 1.21768 0.96757 1.00667 1.01201 1.21611 0.95076 0.96981 1.02231 1.20929 0.94239 0.96206 0.96977 1.21623 0.99802 0.99474 0.94926 1.21879 1.01004 1.00854 0.97417 1.21378 0.95939 0.97263 0.98198 0.90856 1.21648 1.01383 0.95332 1.00528 1.19824 0.82049 0.81785 0.88042 1.90492 1.50846 1.58834 1.40939 1.43243 1.10871 1.55155 1.08362 1.18758 1.44519 0.99750 0.82958 0.91068 1.25268 0.95370 0.94409 0.99120 1.69829 1.42328 1.06824 1.28242 0.86313 0.78273 0.78811 0.83279 1.20609 1.21413 1.19967 1.21968 0.91158 0.94145 0.90299 1.22728 0.94298 0.98948 0.99779 1.22326 0.98767 0.96180 0.99034 1.22037 0.96383 0.97309 0.99833 1.22497 0.95097 0.99270 1.00511 0.92887 0.93591 0.93263 0.90658 0.92827 0.90537 0.92200 0.92291 0.92471 0.93662 0.92519 0.92588 0.92392 0.93314 0.92980 0.91138 0.92661 0.89490 0.92565 0.92471 0.92388 0.92915 0.90834 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.67 37.16 0.36 -1.78 16 2 C -0.12 -2.08 5.07 -26.73 -0.14 -2.22 16 3 C -0.06 -1.13 1.40 -90.62 -0.13 -1.25 16 4 C -0.12 -1.66 5.05 -26.74 -0.13 -1.80 16 5 C -0.15 -1.91 9.15 37.16 0.34 -1.57 16 6 C -0.11 -2.03 0.96 -91.77 -0.09 -2.12 16 7 H 0.07 1.30 4.74 -51.93 -0.25 1.05 16 8 C -0.13 -2.39 8.41 37.16 0.31 -2.07 16 9 C 0.50 12.19 5.08 -10.99 -0.06 12.13 16 10 O -0.53 -15.41 13.10 5.54 0.07 -15.33 16 11 N -0.45 -11.02 2.52 -105.77 -0.27 -11.29 16 12 C -0.33 -8.92 7.24 -14.93 -0.11 -9.03 16 13 H 0.07 1.89 7.12 -52.49 -0.37 1.51 16 14 C 0.07 1.88 4.66 -17.47 -0.08 1.80 16 15 N -0.84 -24.56 11.57 55.50 0.64 -23.91 16 16 Si 0.91 21.95 29.56 -169.99 -5.03 16.92 16 17 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 C 0.13 2.54 2.92 -66.08 -0.19 2.35 16 21 C -0.12 -2.24 6.38 -24.55 -0.16 -2.39 16 22 C -0.12 -1.85 6.82 -25.07 -0.17 -2.02 16 23 C -0.12 -1.72 6.80 -25.61 -0.17 -1.90 16 24 C -0.13 -2.34 6.44 -25.62 -0.16 -2.51 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.63 6.48 -51.93 -0.34 0.29 16 28 H 0.07 1.58 6.46 -51.93 -0.34 1.24 16 29 H 0.05 0.84 6.22 -51.93 -0.32 0.51 16 30 H 0.08 1.54 7.82 -51.93 -0.41 1.13 16 31 H 0.06 0.80 6.77 -51.93 -0.35 0.45 16 32 H 0.06 0.75 6.38 -51.93 -0.33 0.42 16 33 H 0.06 0.72 6.51 -51.93 -0.34 0.38 16 34 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.70 6.23 -51.93 -0.32 0.38 16 36 H 0.06 1.08 7.79 -51.93 -0.40 0.67 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.05 0.72 6.68 -51.93 -0.35 0.37 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.07 1.29 5.17 -51.93 -0.27 1.02 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.09 1.87 6.98 -51.93 -0.36 1.50 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.07 1.43 6.91 -51.93 -0.36 1.07 16 48 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 352.09 15.07 5.31 5.31 Total: -1.00 -30.63 352.09 -8.32 -38.95 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -8.47 Total: 3.73 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -0.58 Total: -14.37 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.38 Total: -35.20 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.07 Total: -15.33 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.63 -8.32 -38.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534888173.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.943 kcal (2) G-P(sol) polarization free energy of solvation -30.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds