Wall clock time and date at job start Tue Mar 31 2020 06:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46890 * 2 1 4 4 C 1.52996 * 109.46842 * 240.00529 * 2 1 3 5 5 C 1.52997 * 109.47253 * 120.00243 * 2 1 3 6 6 C 1.53001 * 109.46922 * 60.00319 * 5 2 1 7 7 C 1.52997 * 109.46922 * 180.02562 * 6 5 2 8 8 C 1.50700 * 109.47382 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99658 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00452 * 179.97438 * 8 7 6 11 11 C 1.46926 * 120.63302 * 180.02562 * 10 8 7 12 12 C 1.53191 * 108.89109 * 233.67613 * 11 10 8 13 13 C 1.53035 * 109.31327 * 305.29292 * 12 11 10 14 14 C 1.50709 * 109.45964 * 181.37529 * 13 12 11 15 15 H 1.07997 * 119.99916 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99864 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00107 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99894 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47214 * 59.99967 * 18 16 14 20 20 H 1.48507 * 109.47144 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47052 * 299.99999 * 18 16 14 22 22 C 1.53038 * 109.54175 * 61.36680 * 13 12 11 23 23 C 1.47207 * 120.81153 * 0.14103 * 10 8 7 24 24 H 1.08998 * 109.46812 * 299.99587 * 1 2 3 25 25 H 1.08994 * 109.47151 * 59.99671 * 1 2 3 26 26 H 1.08997 * 109.46655 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46991 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47582 * 300.00601 * 3 2 1 29 29 H 1.09001 * 109.46551 * 60.00601 * 3 2 1 30 30 H 1.08997 * 109.47378 * 299.99412 * 4 2 1 31 31 H 1.09001 * 109.47700 * 59.99662 * 4 2 1 32 32 H 1.09008 * 109.46920 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.47350 * 299.99841 * 5 2 1 34 34 H 1.08996 * 109.46626 * 179.97438 * 5 2 1 35 35 H 1.08998 * 109.47498 * 59.99612 * 6 5 2 36 36 H 1.09004 * 109.46843 * 299.99247 * 6 5 2 37 37 H 1.08998 * 109.47350 * 59.99522 * 7 6 5 38 38 H 1.09003 * 109.47457 * 299.99533 * 7 6 5 39 39 H 1.09002 * 109.58861 * 113.81616 * 11 10 8 40 40 H 1.08996 * 109.58519 * 353.53507 * 11 10 8 41 41 H 1.09003 * 109.49975 * 65.24379 * 12 11 10 42 42 H 1.09000 * 109.49553 * 185.30642 * 12 11 10 43 43 H 1.09004 * 109.45942 * 301.34050 * 13 12 11 44 44 H 0.97004 * 120.00396 * 180.02562 * 17 16 14 45 45 H 1.09002 * 109.49557 * 58.58503 * 22 13 12 46 46 H 1.08996 * 109.50003 * 178.68400 * 22 13 12 47 47 H 1.08996 * 109.53610 * 6.53712 * 23 10 8 48 48 H 1.09002 * 109.68003 * 246.23180 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.5301 -2.1638 1.2490 7 6 2.0396 -2.8849 2.4985 8 6 1.5369 -4.3056 2.4988 9 8 0.8401 -4.7024 1.5889 10 7 1.8624 -5.1355 3.5096 11 6 1.3803 -6.5233 3.5236 12 6 0.6719 -6.7890 4.8556 13 6 1.6164 -6.4431 6.0090 14 6 0.9347 -6.7352 7.3210 15 1 -0.0714 -7.1276 7.3311 16 6 1.5955 -6.5013 8.5082 17 7 2.8208 -6.0239 8.4958 18 14 0.7503 -6.8626 10.1344 19 1 0.3959 -8.3032 10.1987 20 1 1.6667 -6.5272 11.2538 21 1 -0.4839 -6.0440 10.2434 22 6 1.9816 -4.9584 5.9439 23 6 2.7053 -4.6721 4.6239 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9565 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6767 -1.7488 -1.2494 31 1 1.6766 -0.2073 -2.1393 32 1 3.1300 -0.7207 -1.2495 33 1 1.6768 -0.2075 2.1392 34 1 3.1300 -0.7216 1.2488 35 1 1.8934 -2.6776 0.3590 36 1 0.4401 -2.1638 1.2492 37 1 1.6760 -2.3710 3.3883 38 1 3.1296 -2.8850 2.4990 39 1 2.2245 -7.2045 3.4165 40 1 0.6814 -6.6756 2.7012 41 1 -0.2237 -6.1710 4.9210 42 1 0.3931 -7.8410 4.9159 43 1 2.5224 -7.0439 5.9290 44 1 3.2859 -5.8597 9.3311 45 1 1.0738 -4.3577 5.9990 46 1 2.6356 -4.7077 6.7791 47 1 2.8800 -3.6006 4.5278 48 1 3.6586 -5.2006 4.6075 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541051037.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:25 Heat of formation + Delta-G solvation = -80.706505 kcal Electronic energy + Delta-G solvation = -22763.465414 eV Core-core repulsion = 19623.557514 eV Total energy + Delta-G solvation = -3139.907901 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.72373 -38.19457 -36.75679 -33.51220 -33.07674 -31.19188 -30.07000 -27.62056 -27.40954 -27.32098 -25.92086 -23.19127 -22.47069 -21.66283 -19.68996 -18.81131 -18.12830 -16.81522 -16.09291 -15.73964 -15.51774 -14.68953 -14.65379 -14.54165 -14.19243 -13.91234 -13.29702 -13.13805 -12.87156 -12.68853 -12.60376 -12.49683 -12.09260 -11.91152 -11.83863 -11.68671 -11.64716 -11.45020 -11.28313 -10.94013 -10.93002 -10.67860 -10.58491 -10.52009 -10.41012 -10.36924 -10.10478 -9.66037 -9.32658 -9.17571 -8.92923 -8.39162 -7.97740 -6.04669 -4.10815 3.05007 3.28702 3.33366 3.36561 3.52404 4.39561 4.55493 4.66836 4.67379 4.94415 5.10389 5.14931 5.24781 5.38797 5.44605 5.46919 5.51901 5.62566 5.63794 5.65005 5.74047 5.78281 5.79441 5.83736 5.85112 5.95645 5.97822 6.07147 6.10380 6.14675 6.17678 6.19783 6.29524 6.37111 6.43830 6.47667 6.66199 6.90193 7.03681 7.14861 7.27108 7.64937 7.90544 7.97076 8.02734 8.38773 8.62161 8.92372 9.54293 11.00815 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028018 B = 0.003176 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.117867 B = 8815.050025 C = 9266.438884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.070 4.070 3 C -0.141 4.141 4 C -0.145 4.145 5 C -0.110 4.110 6 C -0.105 4.105 7 C -0.140 4.140 8 C 0.510 3.490 9 O -0.562 6.562 10 N -0.602 5.602 11 C 0.111 3.889 12 C -0.123 4.123 13 C 0.049 3.951 14 C -0.512 4.512 15 H 0.054 0.946 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.278 1.278 22 C -0.124 4.124 23 C 0.103 3.897 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.051 0.949 42 H 0.059 0.941 43 H 0.027 0.973 44 H 0.261 0.739 45 H 0.038 0.962 46 H 0.104 0.896 47 H 0.067 0.933 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.081 11.549 -13.955 18.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.070 4.070 3 C -0.198 4.198 4 C -0.202 4.202 5 C -0.147 4.147 6 C -0.143 4.143 7 C -0.179 4.179 8 C 0.298 3.702 9 O -0.442 6.442 10 N -0.335 5.335 11 C -0.011 4.011 12 C -0.161 4.161 13 C 0.030 3.970 14 C -0.551 4.551 15 H 0.072 0.928 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.163 4.163 23 C -0.019 4.019 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.045 0.955 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.122 0.878 47 H 0.086 0.914 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.874 11.385 -14.289 18.291 hybrid contribution -0.325 -0.180 1.171 1.229 sum 0.548 11.205 -13.118 17.260 Atomic orbital electron populations 1.21946 0.94658 1.02302 1.01339 1.20533 0.95761 0.95139 0.95552 1.21874 1.00836 0.95589 1.01517 1.21942 1.00794 1.00791 0.96656 1.21674 1.00467 0.95405 0.97195 1.21464 1.01686 0.94140 0.97022 1.21696 1.02247 0.93203 1.00794 1.20643 0.80275 0.87715 0.81555 1.90623 1.39452 1.77647 1.36485 1.48344 1.50548 1.12321 1.22266 1.21664 0.98581 0.81321 0.99578 1.22000 0.99387 1.00493 0.94232 1.18627 0.94389 0.92140 0.91809 1.21177 1.00638 1.42599 0.90641 0.92773 1.24955 0.94855 0.95090 0.99048 1.69824 1.11298 1.45129 1.26889 0.86674 0.79363 0.78827 0.83236 1.20304 1.21300 1.20338 1.22025 0.99771 0.99961 0.94505 1.22091 0.93720 0.98431 0.87639 0.92759 0.93077 0.91936 0.92791 0.92907 0.92747 0.91956 0.93079 0.92838 0.91897 0.91992 0.91141 0.91061 0.89088 0.89359 0.92388 0.90473 0.93030 0.92217 0.95484 0.92921 0.94275 0.87766 0.91416 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.12 37.16 0.30 -1.02 16 2 C -0.07 -0.62 0.80 -154.51 -0.12 -0.74 16 3 C -0.14 -1.10 8.47 37.16 0.31 -0.78 16 4 C -0.14 -1.27 8.12 37.16 0.30 -0.97 16 5 C -0.11 -1.05 4.27 -26.73 -0.11 -1.17 16 6 C -0.11 -1.25 3.80 -26.73 -0.10 -1.35 16 7 C -0.14 -1.82 4.05 -27.88 -0.11 -1.93 16 8 C 0.51 8.83 7.70 -10.99 -0.08 8.75 16 9 O -0.56 -11.29 15.39 5.55 0.09 -11.20 16 10 N -0.60 -10.86 2.98 -172.52 -0.51 -11.38 16 11 C 0.11 2.07 6.42 -3.71 -0.02 2.04 16 12 C -0.12 -2.54 5.30 -26.61 -0.14 -2.69 16 13 C 0.05 1.16 2.06 -91.73 -0.19 0.97 16 14 C -0.51 -13.63 8.56 -34.44 -0.29 -13.92 16 15 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 16 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 17 N -0.89 -24.29 11.31 55.43 0.63 -23.67 16 18 Si 0.89 20.79 29.54 -169.99 -5.02 15.76 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 C -0.12 -2.71 5.16 -26.59 -0.14 -2.84 16 23 C 0.10 1.82 6.35 -3.54 -0.02 1.79 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.63 6.43 -51.93 -0.33 0.30 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.61 6.43 -51.93 -0.33 0.27 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.45 8.14 -51.92 -0.42 0.02 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.89 6.39 -51.93 -0.33 0.56 16 36 H 0.07 0.93 6.39 -51.93 -0.33 0.60 16 37 H 0.09 1.13 7.70 -51.93 -0.40 0.73 16 38 H 0.09 1.01 7.95 -51.93 -0.41 0.60 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.08 1.44 7.00 -51.93 -0.36 1.08 16 41 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 45 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.10 2.52 6.03 -51.93 -0.31 2.21 16 47 H 0.07 1.00 5.97 -51.93 -0.31 0.69 16 48 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 363.51 15.07 5.48 5.48 Total: -1.00 -28.50 363.51 -8.88 -37.38 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -9.01 Total: -0.04 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -0.52 Total: -12.33 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.11 Total: -35.05 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.50 -8.88 -37.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541051037.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.329 kcal (2) G-P(sol) polarization free energy of solvation -28.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds