Wall clock time and date at job start Tue Mar 31 2020 05:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47280 * 2 1 4 4 C 1.52999 * 109.54197 * 179.00746 * 3 2 1 5 5 N 1.46897 * 109.47057 * 54.29715 * 4 3 2 6 6 C 1.46852 * 110.99854 * 89.62215 * 5 4 3 7 7 C 1.53036 * 109.52119 * 185.83923 * 6 5 4 8 8 C 1.53125 * 109.27803 * 300.81516 * 7 6 5 9 9 C 1.50698 * 109.52278 * 177.56124 * 8 7 6 10 10 H 1.07995 * 120.00298 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99897 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99828 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99998 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47362 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.46913 * 120.00092 * 13 11 9 16 16 H 1.48504 * 109.46883 * 239.99770 * 13 11 9 17 17 C 1.53124 * 109.15742 * 57.65488 * 8 7 6 18 18 C 1.46849 * 110.99662 * 213.82542 * 5 4 3 19 19 C 1.53175 * 109.54089 * 299.18764 * 3 2 1 20 20 C 1.53286 * 109.06335 * 176.85232 * 19 3 2 21 21 O 1.42905 * 109.45549 * 302.44204 * 20 19 3 22 22 C 1.42905 * 114.09723 * 61.15956 * 21 20 19 23 23 C 1.53088 * 109.41330 * 298.83695 * 22 21 20 24 24 H 1.09001 * 109.47049 * 60.00367 * 1 2 3 25 25 H 1.09001 * 109.46833 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47428 * 299.99815 * 1 2 3 27 27 H 1.09003 * 109.47157 * 240.00511 * 2 1 3 28 28 H 1.08994 * 109.47567 * 119.99991 * 2 1 3 29 29 H 1.08992 * 109.47143 * 294.29399 * 4 3 2 30 30 H 1.09006 * 109.46694 * 174.29340 * 4 3 2 31 31 H 1.08993 * 109.46776 * 65.81830 * 6 5 4 32 32 H 1.09000 * 109.46036 * 305.84419 * 6 5 4 33 33 H 1.09001 * 109.50890 * 180.87807 * 7 6 5 34 34 H 1.08998 * 109.50703 * 60.75611 * 7 6 5 35 35 H 1.08997 * 109.52148 * 297.75003 * 8 7 6 36 36 H 0.97001 * 119.99761 * 179.97438 * 12 11 9 37 37 H 1.09001 * 109.50195 * 62.28876 * 17 8 7 38 38 H 1.09001 * 109.50120 * 182.40774 * 17 8 7 39 39 H 1.09001 * 109.46235 * 294.17766 * 18 5 4 40 40 H 1.08995 * 109.46039 * 54.14774 * 18 5 4 41 41 H 1.09000 * 109.52245 * 296.83769 * 19 3 2 42 42 H 1.08996 * 109.52745 * 57.02471 * 19 3 2 43 43 H 1.08996 * 109.45616 * 182.45045 * 20 19 3 44 44 H 1.08998 * 109.46481 * 62.44710 * 20 19 3 45 45 H 1.09004 * 109.47473 * 178.85511 * 22 21 20 46 46 H 1.09002 * 109.49047 * 58.83130 * 22 21 20 47 47 H 1.08991 * 109.52560 * 297.70144 * 23 22 21 48 48 H 1.09004 * 109.57274 * 177.54589 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5698 1.4445 0.0250 5 7 4.0787 0.6304 -1.0868 6 6 4.2643 1.4456 -2.2941 7 6 4.6541 0.5422 -3.4663 8 6 5.9496 -0.1990 -3.1242 9 6 6.3065 -1.1351 -4.2500 10 1 5.6732 -1.1965 -5.1226 11 6 7.4411 -1.9140 -4.1654 12 7 8.2121 -1.8396 -3.1026 13 14 7.8839 -3.0738 -5.5612 14 1 6.8623 -2.9703 -6.6338 15 1 9.2148 -2.7056 -6.1073 16 1 7.9264 -4.4680 -5.0515 17 6 5.7442 -1.0019 -1.8366 18 6 5.3228 -0.0537 -0.7117 19 6 1.5471 2.1602 -1.2602 20 6 1.9975 3.6246 -1.2109 21 8 1.4930 4.2380 -0.0229 22 6 1.9583 3.6365 1.1870 23 6 1.5063 2.1747 1.2351 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.9183 1.0276 0.9698 30 1 3.9335 2.4670 -0.0772 31 1 5.0538 2.1767 -2.1209 32 1 3.3346 1.9639 -2.5288 33 1 4.8070 1.1493 -4.3586 34 1 3.8588 -0.1804 -3.6490 35 1 6.7543 0.5218 -2.9796 36 1 9.0101 -2.3878 -3.0430 37 1 4.9661 -1.7488 -1.9937 38 1 6.6760 -1.4978 -1.5645 39 1 6.1074 0.6845 -0.5459 40 1 5.1619 -0.6243 0.2030 41 1 1.9674 1.6773 -2.1424 42 1 0.4589 2.1154 -1.3030 43 1 1.6131 4.1523 -2.0838 44 1 3.0865 3.6698 -1.2092 45 1 1.5457 4.1729 2.0416 46 1 3.0469 3.6818 1.2205 47 1 0.4174 2.1301 1.2428 48 1 1.8966 1.7012 2.1361 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543779206.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:22 Heat of formation + Delta-G solvation = -58.371726 kcal Electronic energy + Delta-G solvation = -24262.369950 eV Core-core repulsion = 21123.430557 eV Total energy + Delta-G solvation = -3138.939392 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.42686 -37.86840 -35.85432 -33.54696 -31.35418 -31.31176 -30.53421 -29.45013 -27.22532 -25.13173 -23.77381 -23.44396 -22.09009 -21.99470 -21.33430 -18.56781 -18.25352 -16.43951 -16.07263 -16.04621 -15.24312 -14.94680 -14.89612 -14.67776 -14.28888 -13.96678 -13.48285 -13.27735 -13.04227 -12.50108 -12.48594 -12.32265 -12.30152 -12.05153 -11.53537 -11.42116 -11.36778 -11.01763 -10.93990 -10.89590 -10.71900 -10.59682 -10.39615 -10.19225 -10.06127 -9.96387 -9.88853 -9.45075 -9.34529 -8.84385 -8.68114 -8.28160 -7.66879 -5.96394 -4.01534 3.30610 3.38846 3.42912 3.86932 4.36381 4.46261 4.70824 4.78856 4.92902 5.02749 5.21120 5.23216 5.32289 5.34252 5.39952 5.53666 5.57401 5.59252 5.66445 5.71780 5.77548 5.82866 5.89732 5.94236 5.99010 6.06751 6.11038 6.17515 6.25860 6.30488 6.34842 6.39854 6.53903 6.61614 6.65903 6.71932 6.86595 7.09871 7.18564 7.19003 7.46060 7.64373 7.73174 7.85548 8.06568 8.17728 8.49837 9.02557 9.62954 11.09734 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029434 B = 0.004181 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.057109 B = 6694.649467 C = 6838.902082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.102 4.102 3 C -0.046 4.046 4 C 0.057 3.943 5 N -0.527 5.527 6 C 0.045 3.955 7 C -0.106 4.106 8 C 0.048 3.952 9 C -0.509 4.509 10 H 0.054 0.946 11 C 0.060 3.940 12 N -0.892 5.892 13 Si 0.888 3.112 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.285 1.285 17 C -0.103 4.103 18 C 0.058 3.942 19 C -0.156 4.156 20 C 0.055 3.945 21 O -0.386 6.386 22 C 0.059 3.941 23 C -0.148 4.148 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.084 0.916 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.035 0.965 31 H 0.020 0.980 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.019 0.981 36 H 0.258 0.742 37 H 0.043 0.957 38 H 0.091 0.909 39 H 0.019 0.981 40 H 0.053 0.947 41 H 0.095 0.905 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.052 0.948 45 H 0.087 0.913 46 H 0.049 0.951 47 H 0.074 0.926 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.837 8.056 8.699 17.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.139 4.139 3 C -0.047 4.047 4 C -0.072 4.072 5 N -0.252 5.252 6 C -0.082 4.082 7 C -0.144 4.144 8 C 0.030 3.970 9 C -0.547 4.547 10 H 0.072 0.928 11 C -0.140 4.140 12 N -0.532 5.532 13 Si 0.717 3.283 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.211 1.211 17 C -0.141 4.141 18 C -0.069 4.069 19 C -0.193 4.193 20 C -0.021 4.021 21 O -0.305 6.305 22 C -0.018 4.018 23 C -0.186 4.186 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.102 0.898 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.038 0.962 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.037 0.963 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.109 0.891 39 H 0.038 0.962 40 H 0.072 0.928 41 H 0.113 0.887 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.070 0.930 45 H 0.105 0.895 46 H 0.067 0.933 47 H 0.093 0.907 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.127 7.772 8.653 17.539 hybrid contribution 1.205 -0.314 -0.436 1.320 sum -11.922 7.458 8.217 16.287 Atomic orbital electron populations 1.21927 0.97011 1.00987 1.01337 1.21386 0.94181 0.95181 1.03176 1.20511 0.94697 0.95570 0.93884 1.22251 0.94133 0.95971 0.94837 1.61904 1.30516 1.29358 1.03388 1.22561 0.99037 0.95009 0.91614 1.21673 1.00347 0.97704 0.94673 1.18675 0.90980 0.93998 0.93385 1.21256 1.07896 1.22328 1.03226 0.92750 1.24966 0.96308 0.97061 0.95678 1.69891 1.14779 1.40678 1.27832 0.86594 0.78237 0.80882 0.82629 1.19835 1.21165 1.21101 1.21647 1.01244 0.97013 0.94219 1.22304 0.88511 0.96746 0.99322 1.22576 1.01548 0.95443 0.99720 1.22737 0.98321 0.93567 0.87489 1.87885 1.71882 1.56810 1.13886 1.22580 0.98489 0.93419 0.87301 1.22328 1.01925 0.95786 0.98549 0.92748 0.93275 0.93198 0.89786 0.92760 0.91870 0.94652 0.96184 0.90982 0.93394 0.92544 0.96314 0.93207 0.93866 0.89110 0.96234 0.92811 0.88677 0.91255 0.89284 0.93009 0.89455 0.93299 0.90697 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.21 37.16 0.34 -1.31 16 2 C -0.10 -1.26 4.76 -26.73 -0.13 -1.38 16 3 C -0.05 -0.55 0.38 -154.32 -0.06 -0.60 16 4 C 0.06 0.78 3.70 -3.83 -0.01 0.76 16 5 N -0.53 -8.78 3.45 -234.68 -0.81 -9.59 16 6 C 0.05 0.77 4.38 -3.83 -0.02 0.76 16 7 C -0.11 -2.18 5.32 -26.65 -0.14 -2.32 16 8 C 0.05 1.18 2.16 -91.64 -0.20 0.99 16 9 C -0.51 -13.91 8.56 -34.44 -0.29 -14.21 16 10 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 11 C 0.06 1.67 5.31 -17.82 -0.09 1.57 16 12 N -0.89 -25.39 11.37 55.43 0.63 -24.76 16 13 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 14 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 C -0.10 -2.39 5.12 -26.65 -0.14 -2.53 16 18 C 0.06 1.12 5.33 -3.83 -0.02 1.10 16 19 C -0.16 -1.87 4.11 -26.49 -0.11 -1.98 16 20 C 0.06 0.66 6.01 37.31 0.22 0.88 16 21 O -0.39 -4.89 10.77 -35.23 -0.38 -5.26 16 22 C 0.06 0.63 6.57 37.20 0.24 0.87 16 23 C -0.15 -1.54 4.62 -26.59 -0.12 -1.66 16 24 H 0.05 0.58 6.39 -51.93 -0.33 0.25 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.49 6.35 -51.93 -0.33 0.16 16 27 H 0.08 1.24 7.50 -51.93 -0.39 0.85 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.86 7.58 -51.93 -0.39 0.46 16 30 H 0.04 0.49 4.68 -51.93 -0.24 0.25 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 1.08 3.71 -51.93 -0.19 0.88 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.09 2.37 6.17 -51.93 -0.32 2.05 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.05 0.95 7.91 -51.93 -0.41 0.54 16 41 H 0.10 1.26 5.13 -51.93 -0.27 0.99 16 42 H 0.07 0.80 6.31 -51.93 -0.33 0.48 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.05 0.65 5.72 -51.93 -0.30 0.35 16 45 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.05 0.53 6.73 -51.93 -0.35 0.18 16 47 H 0.07 0.77 6.26 -51.93 -0.33 0.44 16 48 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 338.05 15.07 5.09 5.09 Total: -1.00 -27.84 338.05 -9.38 -37.22 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -8.37 Total: 0.09 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: -0.52 Total: -19.07 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: -0.18 Total: -34.35 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.38 Total: -5.26 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.84 -9.38 -37.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543779206.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.149 kcal (2) G-P(sol) polarization free energy of solvation -27.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds