Wall clock time and date at job start Tue Mar 31 2020 05:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47280 * 2 1 4 4 C 1.52999 * 109.54197 * 179.00746 * 3 2 1 5 5 N 1.46897 * 109.47057 * 54.29715 * 4 3 2 6 6 C 1.46852 * 110.99854 * 89.62215 * 5 4 3 7 7 C 1.53036 * 109.52119 * 185.83923 * 6 5 4 8 8 C 1.53125 * 109.27803 * 300.81516 * 7 6 5 9 9 C 1.50698 * 109.52278 * 177.56124 * 8 7 6 10 10 H 1.07995 * 120.00298 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99897 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99828 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99998 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47362 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.46913 * 120.00092 * 13 11 9 16 16 H 1.48504 * 109.46883 * 239.99770 * 13 11 9 17 17 C 1.53124 * 109.15742 * 57.65488 * 8 7 6 18 18 C 1.46849 * 110.99662 * 213.82542 * 5 4 3 19 19 C 1.53175 * 109.54089 * 299.18764 * 3 2 1 20 20 C 1.53286 * 109.06335 * 176.85232 * 19 3 2 21 21 O 1.42905 * 109.45549 * 302.44204 * 20 19 3 22 22 C 1.42905 * 114.09723 * 61.15956 * 21 20 19 23 23 C 1.53088 * 109.41330 * 298.83695 * 22 21 20 24 24 H 1.09001 * 109.47049 * 60.00367 * 1 2 3 25 25 H 1.09001 * 109.46833 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47428 * 299.99815 * 1 2 3 27 27 H 1.09003 * 109.47157 * 240.00511 * 2 1 3 28 28 H 1.08994 * 109.47567 * 119.99991 * 2 1 3 29 29 H 1.08992 * 109.47143 * 294.29399 * 4 3 2 30 30 H 1.09006 * 109.46694 * 174.29340 * 4 3 2 31 31 H 1.08993 * 109.46776 * 65.81830 * 6 5 4 32 32 H 1.09000 * 109.46036 * 305.84419 * 6 5 4 33 33 H 1.09001 * 109.50890 * 180.87807 * 7 6 5 34 34 H 1.08998 * 109.50703 * 60.75611 * 7 6 5 35 35 H 1.08997 * 109.52148 * 297.75003 * 8 7 6 36 36 H 0.97001 * 119.99761 * 179.97438 * 12 11 9 37 37 H 1.09001 * 109.50195 * 62.28876 * 17 8 7 38 38 H 1.09001 * 109.50120 * 182.40774 * 17 8 7 39 39 H 1.09001 * 109.46235 * 294.17766 * 18 5 4 40 40 H 1.08995 * 109.46039 * 54.14774 * 18 5 4 41 41 H 1.09000 * 109.52245 * 296.83769 * 19 3 2 42 42 H 1.08996 * 109.52745 * 57.02471 * 19 3 2 43 43 H 1.08996 * 109.45616 * 182.45045 * 20 19 3 44 44 H 1.08998 * 109.46481 * 62.44710 * 20 19 3 45 45 H 1.09004 * 109.47473 * 178.85511 * 22 21 20 46 46 H 1.09002 * 109.49047 * 58.83130 * 22 21 20 47 47 H 1.08991 * 109.52560 * 297.70144 * 23 22 21 48 48 H 1.09004 * 109.57274 * 177.54589 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5698 1.4445 0.0250 5 7 4.0787 0.6304 -1.0868 6 6 4.2643 1.4456 -2.2941 7 6 4.6541 0.5422 -3.4663 8 6 5.9496 -0.1990 -3.1242 9 6 6.3065 -1.1351 -4.2500 10 1 5.6732 -1.1965 -5.1226 11 6 7.4411 -1.9140 -4.1654 12 7 8.2121 -1.8396 -3.1026 13 14 7.8839 -3.0738 -5.5612 14 1 6.8623 -2.9703 -6.6338 15 1 9.2148 -2.7056 -6.1073 16 1 7.9264 -4.4680 -5.0515 17 6 5.7442 -1.0019 -1.8366 18 6 5.3228 -0.0537 -0.7117 19 6 1.5471 2.1602 -1.2602 20 6 1.9975 3.6246 -1.2109 21 8 1.4930 4.2380 -0.0229 22 6 1.9583 3.6365 1.1870 23 6 1.5063 2.1747 1.2351 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.9183 1.0276 0.9698 30 1 3.9335 2.4670 -0.0772 31 1 5.0538 2.1767 -2.1209 32 1 3.3346 1.9639 -2.5288 33 1 4.8070 1.1493 -4.3586 34 1 3.8588 -0.1804 -3.6490 35 1 6.7543 0.5218 -2.9796 36 1 9.0101 -2.3878 -3.0430 37 1 4.9661 -1.7488 -1.9937 38 1 6.6760 -1.4978 -1.5645 39 1 6.1074 0.6845 -0.5459 40 1 5.1619 -0.6243 0.2030 41 1 1.9674 1.6773 -2.1424 42 1 0.4589 2.1154 -1.3030 43 1 1.6131 4.1523 -2.0838 44 1 3.0865 3.6698 -1.2092 45 1 1.5457 4.1729 2.0416 46 1 3.0469 3.6818 1.2205 47 1 0.4174 2.1301 1.2428 48 1 1.8966 1.7012 2.1361 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543779206.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:22 Heat of formation + Delta-G solvation = -73.553795 kcal Electronic energy + Delta-G solvation = -24263.028293 eV Core-core repulsion = 21123.430557 eV Total energy + Delta-G solvation = -3139.597736 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.46254 -39.29612 -36.97647 -35.29526 -33.06339 -32.36953 -31.62050 -30.91101 -28.67527 -26.69082 -24.84771 -24.53539 -23.61941 -23.11469 -22.83985 -20.33549 -19.25407 -18.43572 -17.08525 -16.96699 -16.70677 -16.36836 -16.07149 -15.86931 -15.67330 -15.10607 -14.78052 -14.65947 -14.44688 -14.10448 -14.02921 -13.69648 -13.37652 -13.08507 -12.88794 -12.81096 -12.61915 -12.58062 -12.37375 -12.22640 -12.15682 -11.89955 -11.78690 -11.68190 -11.58161 -11.35838 -11.02830 -10.97056 -10.64067 -10.58593 -10.36233 -10.24950 -9.05435 -8.07949 -6.21160 1.39219 1.41378 1.52554 2.43640 3.00840 3.05964 3.19169 3.74425 3.84869 3.95238 4.15049 4.19581 4.20869 4.31045 4.35111 4.37527 4.46305 4.53805 4.54647 4.63253 4.66313 4.77093 4.79127 4.80212 4.85544 4.89993 4.92647 4.97726 5.07875 5.09912 5.13319 5.20924 5.23962 5.33923 5.34676 5.38342 5.43179 5.57066 5.60448 5.64385 5.73612 6.01937 6.05371 6.30754 6.34205 6.39236 6.41920 6.90982 7.46754 8.96629 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029434 B = 0.004181 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.057109 B = 6694.649467 C = 6838.902082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.099 4.099 3 C -0.042 4.042 4 C 0.058 3.942 5 N -0.526 5.526 6 C 0.053 3.947 7 C -0.099 4.099 8 C 0.045 3.955 9 C -0.531 4.531 10 H 0.050 0.950 11 C 0.013 3.987 12 N -0.918 5.918 13 Si 0.952 3.048 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.280 1.280 17 C -0.093 4.093 18 C 0.070 3.930 19 C -0.152 4.152 20 C 0.056 3.944 21 O -0.398 6.398 22 C 0.054 3.946 23 C -0.141 4.141 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.038 0.962 31 H 0.013 0.987 32 H 0.102 0.898 33 H 0.049 0.951 34 H 0.052 0.948 35 H -0.016 1.016 36 H 0.259 0.741 37 H 0.031 0.969 38 H 0.058 0.942 39 H 0.009 0.991 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.100 0.900 44 H 0.043 0.957 45 H 0.107 0.893 46 H 0.046 0.954 47 H 0.082 0.918 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.567 8.639 9.387 19.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.137 4.137 3 C -0.043 4.043 4 C -0.070 4.070 5 N -0.250 5.250 6 C -0.074 4.074 7 C -0.137 4.137 8 C 0.026 3.974 9 C -0.569 4.569 10 H 0.068 0.932 11 C -0.186 4.186 12 N -0.558 5.558 13 Si 0.778 3.222 14 H -0.192 1.192 15 H -0.207 1.207 16 H -0.206 1.206 17 C -0.131 4.131 18 C -0.058 4.058 19 C -0.189 4.189 20 C -0.021 4.021 21 O -0.317 6.317 22 C -0.022 4.022 23 C -0.179 4.179 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.031 0.969 32 H 0.119 0.881 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.002 0.998 36 H 0.068 0.932 37 H 0.050 0.950 38 H 0.076 0.924 39 H 0.028 0.972 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.118 0.882 44 H 0.062 0.938 45 H 0.125 0.875 46 H 0.064 0.936 47 H 0.100 0.900 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.871 8.364 9.345 19.453 hybrid contribution 1.752 -0.486 -0.638 1.927 sum -13.119 7.878 8.707 17.606 Atomic orbital electron populations 1.21878 0.95512 1.01397 1.01963 1.21321 0.95482 0.95041 1.01825 1.20475 0.93107 0.95683 0.94987 1.22334 0.95455 0.95478 0.93710 1.61866 1.28760 1.30113 1.04300 1.22495 1.00150 0.94093 0.90635 1.21533 0.97970 0.97818 0.96337 1.18651 0.91860 0.93348 0.93527 1.21624 1.08231 1.23132 1.03948 0.93172 1.25726 0.96285 0.98582 0.97976 1.70028 1.15051 1.41368 1.29380 0.85601 0.77991 0.78815 0.79825 1.19211 1.20732 1.20629 1.21390 0.99268 0.97270 0.95181 1.22064 0.89439 0.96069 0.98192 1.22516 1.01957 0.95423 0.99002 1.22751 0.97847 0.93514 0.87972 1.87877 1.72081 1.57300 1.14488 1.22742 0.98529 0.93718 0.87241 1.22284 1.02283 0.95411 0.97930 0.92743 0.93069 0.91866 0.92423 0.92834 0.91244 0.94360 0.96918 0.88067 0.93204 0.92943 0.99767 0.93160 0.95049 0.92353 0.97227 0.91087 0.90059 0.90457 0.88180 0.93830 0.87513 0.93562 0.89973 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.21 71.98 0.66 -2.17 16 2 C -0.10 -2.26 4.76 30.60 0.15 -2.12 16 3 C -0.04 -0.90 0.38 -52.06 -0.02 -0.92 16 4 C 0.06 1.49 3.70 86.30 0.32 1.81 16 5 N -0.53 -17.15 3.45 -896.38 -3.09 -20.24 16 6 C 0.05 1.81 4.38 86.32 0.38 2.19 16 7 C -0.10 -4.10 5.32 30.65 0.16 -3.93 16 8 C 0.04 2.27 2.16 -11.46 -0.02 2.25 16 9 C -0.53 -29.81 8.56 25.60 0.22 -29.59 16 10 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 11 C 0.01 0.70 5.31 84.66 0.45 1.15 16 12 N -0.92 -53.69 11.37 21.45 0.24 -53.44 16 13 Si 0.95 44.20 29.54 68.60 2.03 46.23 16 14 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 15 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 16 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 17 C -0.09 -4.45 5.12 30.65 0.16 -4.29 16 18 C 0.07 2.70 5.33 86.32 0.46 3.16 16 19 C -0.15 -3.31 4.11 30.75 0.13 -3.18 16 20 C 0.06 1.20 6.01 72.08 0.43 1.63 16 21 O -0.40 -9.04 10.77 -148.98 -1.60 -10.64 16 22 C 0.05 0.99 6.57 72.01 0.47 1.46 16 23 C -0.14 -2.48 4.62 30.68 0.14 -2.34 16 24 H 0.05 1.03 6.39 -2.39 -0.02 1.01 16 25 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 1.03 6.35 -2.39 -0.02 1.01 16 27 H 0.06 1.64 7.50 -2.39 -0.02 1.62 16 28 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.07 1.73 7.58 -2.39 -0.02 1.71 16 30 H 0.04 0.99 4.68 -2.38 -0.01 0.98 16 31 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.10 2.88 3.71 -2.39 -0.01 2.87 16 33 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 35 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 36 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 37 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.06 3.17 6.17 -2.39 -0.01 3.16 16 39 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.07 2.47 7.91 -2.39 -0.02 2.46 16 41 H 0.08 2.00 5.13 -2.39 -0.01 1.99 16 42 H 0.08 1.59 6.31 -2.39 -0.02 1.57 16 43 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.04 1.01 5.72 -2.39 -0.01 0.99 16 45 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 46 H 0.05 0.88 6.73 -2.39 -0.02 0.86 16 47 H 0.08 1.37 6.26 -2.39 -0.01 1.36 16 48 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 Total: -1.00 -60.78 338.05 2.58 -58.20 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.92 Total: 14.80 kcal Atomic # 6 Polarization: -38.98 SS G_CDS: 4.09 Total: -34.90 kcal Atomic # 7 Polarization: -70.84 SS G_CDS: -2.85 Total: -73.69 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -1.60 Total: -10.64 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -60.78 2.58 -58.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543779206.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.357 kcal (2) G-P(sol) polarization free energy of solvation -60.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds