Wall clock time and date at job start Tue Mar 31 2020 06:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46955 * 2 1 4 4 C 1.53000 * 109.47463 * 120.00009 * 2 1 3 5 5 C 1.52990 * 109.46993 * 67.11759 * 4 2 1 6 6 C 1.53006 * 109.47223 * 173.11192 * 5 4 2 7 7 C 1.53000 * 109.47454 * 53.10925 * 5 4 2 8 8 C 1.50703 * 109.47144 * 293.10685 * 5 4 2 9 9 O 1.21291 * 119.99861 * 118.55095 * 8 5 4 10 10 N 1.34772 * 120.00240 * 298.55451 * 8 5 4 11 11 C 1.46923 * 120.63154 * 5.59633 * 10 8 5 12 12 C 1.52758 * 109.01429 * 233.58769 * 11 10 8 13 13 C 1.53050 * 109.38120 * 305.58865 * 12 11 10 14 14 C 1.50694 * 109.44627 * 181.24895 * 13 12 11 15 15 H 1.08000 * 120.00282 * 239.93532 * 14 13 12 16 16 C 1.37875 * 119.99919 * 59.94505 * 14 13 12 17 17 N 1.31513 * 119.99970 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99977 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47247 * 359.97438 * 18 16 14 20 20 H 1.48507 * 109.47212 * 119.99303 * 18 16 14 21 21 H 1.48495 * 109.47288 * 239.99768 * 18 16 14 22 22 C 1.53043 * 109.53566 * 61.23665 * 13 12 11 23 23 C 1.46929 * 120.62982 * 185.88176 * 10 8 5 24 24 H 1.09005 * 109.46801 * 283.29779 * 1 2 3 25 25 H 1.08998 * 109.47566 * 43.30104 * 1 2 3 26 26 H 1.09003 * 109.46656 * 163.30560 * 1 2 3 27 27 H 1.08996 * 109.46774 * 240.00630 * 2 1 3 28 28 H 1.09000 * 109.47442 * 64.87304 * 3 2 1 29 29 H 1.08994 * 109.47435 * 184.87483 * 3 2 1 30 30 H 1.09007 * 109.46868 * 304.87294 * 3 2 1 31 31 H 1.09000 * 109.46862 * 307.11376 * 4 2 1 32 32 H 1.08998 * 109.46705 * 187.11851 * 4 2 1 33 33 H 1.08999 * 109.46585 * 298.34304 * 6 5 4 34 34 H 1.08996 * 109.46867 * 58.34281 * 6 5 4 35 35 H 1.08996 * 109.47026 * 178.34337 * 6 5 4 36 36 H 1.09008 * 109.47089 * 177.68694 * 7 5 4 37 37 H 1.09000 * 109.46938 * 297.68866 * 7 5 4 38 38 H 1.08995 * 109.46884 * 57.69236 * 7 5 4 39 39 H 1.09001 * 109.58743 * 353.42403 * 11 10 8 40 40 H 1.09004 * 109.58714 * 113.84481 * 11 10 8 41 41 H 1.08990 * 109.57034 * 185.55261 * 12 11 10 42 42 H 1.09007 * 109.38525 * 65.51161 * 12 11 10 43 43 H 1.08992 * 109.45764 * 301.22153 * 13 12 11 44 44 H 0.96999 * 119.99774 * 180.02562 * 17 16 14 45 45 H 1.09001 * 109.49625 * 178.68069 * 22 13 12 46 46 H 1.09004 * 109.52178 * 58.60256 * 22 13 12 47 47 H 1.09002 * 109.58749 * 246.15210 * 23 10 8 48 48 H 1.08995 * 109.58854 * 6.43611 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6814 -2.2060 1.1630 6 6 2.3372 -2.9573 2.3234 7 6 2.1858 -2.7765 -0.1640 8 6 0.1850 -2.3666 1.2425 9 8 -0.4217 -2.8623 0.3165 10 7 -0.4790 -1.9595 2.3423 11 6 0.2220 -1.2473 3.4193 12 6 -0.0384 -1.9651 4.7424 13 6 -1.5476 -2.1020 4.9574 14 6 -1.8066 -2.7825 6.2767 15 1 -2.3482 -3.7164 6.3055 16 6 -1.3525 -2.2127 7.4472 17 7 -0.6927 -1.0755 7.4122 18 14 -1.6742 -3.0558 9.0827 19 1 -2.4318 -4.3119 8.8515 20 1 -0.3804 -3.3714 9.7399 21 1 -2.4666 -2.1542 9.9570 22 6 -2.1521 -2.9365 3.8259 23 6 -1.9166 -2.2249 2.4899 24 1 -0.3633 0.2364 1.0002 25 1 -0.3634 0.7479 -0.7048 26 1 -0.3633 -0.9844 -0.2952 27 1 1.8933 -0.5137 -0.8900 28 1 1.7497 1.9306 0.9304 29 1 3.1264 1.4439 -0.0873 30 1 1.6071 1.9809 -0.8432 31 1 1.5766 -0.2861 2.1346 32 1 3.1226 -0.6122 1.3150 33 1 3.4208 -2.8657 2.2493 34 1 2.0002 -2.5316 3.2685 35 1 2.0576 -4.0099 2.2789 36 1 1.9666 -3.8434 -0.2076 37 1 1.6879 -2.2691 -0.9902 38 1 3.2623 -2.6234 -0.2394 39 1 1.2927 -1.2382 3.2148 40 1 -0.1487 -0.2242 3.4826 41 1 0.3949 -1.3905 5.5609 42 1 0.4161 -2.9554 4.7124 43 1 -2.0048 -1.1126 4.9630 44 1 -0.3729 -0.6749 8.2356 45 1 -3.2230 -3.0534 3.9921 46 1 -1.6781 -3.9179 3.8038 47 1 -2.4654 -1.2832 2.4759 48 1 -2.2572 -2.8584 1.6710 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543832905.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:28 Heat of formation + Delta-G solvation = -46.168710 kcal Electronic energy + Delta-G solvation = -24643.294467 eV Core-core repulsion = 21504.884237 eV Total energy + Delta-G solvation = -3138.410230 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.78701 -37.24662 -36.47311 -33.87970 -33.40026 -31.14600 -30.14728 -27.32562 -26.89187 -26.55525 -26.30687 -23.67156 -22.41585 -21.51824 -20.13974 -19.24026 -18.10820 -16.51132 -16.06911 -15.75400 -15.45772 -14.73324 -14.56455 -14.27872 -13.73753 -13.49093 -13.11978 -12.95680 -12.85650 -12.57615 -12.47644 -12.38758 -12.12526 -12.02363 -11.71940 -11.65057 -11.47596 -11.37527 -11.30376 -10.98117 -10.74564 -10.62443 -10.58555 -10.37418 -10.17233 -10.09604 -10.02108 -9.62195 -9.20264 -9.16825 -8.78641 -8.39261 -7.93853 -6.05103 -4.10981 3.06392 3.25583 3.34360 3.38460 3.54681 4.39381 4.65530 4.69123 4.86339 5.04109 5.22309 5.24947 5.28180 5.44485 5.57207 5.63590 5.68078 5.74732 5.76413 5.80599 5.86712 5.92688 5.96455 5.98969 6.03844 6.06490 6.07636 6.15133 6.17592 6.21978 6.31423 6.35234 6.37515 6.46643 6.53447 6.61278 6.67934 6.91133 7.04905 7.16174 7.27158 7.65380 7.90733 7.99392 8.03453 8.38851 8.65149 8.92746 9.54318 11.00354 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024472 B = 0.004886 C = 0.004739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.869393 B = 5729.012851 C = 5906.973901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.098 4.098 3 C -0.146 4.146 4 C -0.123 4.123 5 C -0.082 4.082 6 C -0.158 4.158 7 C -0.126 4.126 8 C 0.533 3.467 9 O -0.562 6.562 10 N -0.595 5.595 11 C 0.082 3.918 12 C -0.126 4.126 13 C 0.049 3.951 14 C -0.511 4.511 15 H 0.055 0.945 16 C 0.062 3.938 17 N -0.892 5.892 18 Si 0.889 3.111 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.285 1.285 22 C -0.123 4.123 23 C 0.112 3.888 24 H 0.056 0.944 25 H 0.046 0.954 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.104 0.896 42 H 0.039 0.961 43 H 0.026 0.974 44 H 0.259 0.741 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.057 0.943 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.126 2.441 -11.759 13.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.116 4.116 3 C -0.203 4.203 4 C -0.160 4.160 5 C -0.085 4.085 6 C -0.215 4.215 7 C -0.183 4.183 8 C 0.322 3.678 9 O -0.443 6.443 10 N -0.326 5.326 11 C -0.040 4.040 12 C -0.164 4.164 13 C 0.031 3.969 14 C -0.549 4.549 15 H 0.073 0.927 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.717 3.283 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.161 4.161 23 C -0.010 4.010 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.111 0.889 40 H 0.078 0.922 41 H 0.122 0.878 42 H 0.058 0.942 43 H 0.044 0.956 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.075 0.925 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.873 2.318 -12.097 14.105 hybrid contribution -0.156 -0.349 1.130 1.193 sum 6.717 1.969 -10.967 13.010 Atomic orbital electron populations 1.22369 0.95117 1.03759 1.01959 1.21194 0.96313 0.95755 0.98327 1.21857 1.00460 0.96262 1.01728 1.22205 1.01606 0.92690 0.99507 1.20759 0.92559 0.97142 0.98024 1.22231 1.00499 1.00645 0.98146 1.21697 0.99880 1.01233 0.95519 1.20261 0.89230 0.76703 0.81603 1.90598 1.69706 1.46614 1.37371 1.48144 1.09823 1.56042 1.18633 1.22553 0.96991 0.95794 0.88641 1.21976 1.00987 0.99176 0.94266 1.18621 0.91293 0.95241 0.91761 1.21250 1.35082 1.07537 0.91007 0.92705 1.24946 0.95115 0.94873 0.98980 1.69843 1.38087 1.17844 1.27327 0.86580 0.77968 0.79670 0.84047 1.19854 1.21060 1.21068 1.22001 1.00545 0.99378 0.94174 1.21665 0.80221 0.99990 0.99170 0.92454 0.93441 0.90025 0.90901 0.92648 0.93005 0.92969 0.89446 0.91120 0.91844 0.89834 0.92228 0.92378 0.91633 0.92501 0.88910 0.92246 0.87833 0.94184 0.95552 0.93057 0.92292 0.93054 0.92452 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 7.85 37.16 0.29 -2.13 16 2 C -0.10 -1.15 2.58 -90.62 -0.23 -1.39 16 3 C -0.15 -1.49 9.15 37.16 0.34 -1.15 16 4 C -0.12 -1.48 3.54 -26.74 -0.09 -1.58 16 5 C -0.08 -1.11 0.53 -155.66 -0.08 -1.20 16 6 C -0.16 -2.08 8.16 37.16 0.30 -1.78 16 7 C -0.13 -1.58 7.17 37.16 0.27 -1.31 16 8 C 0.53 9.01 3.73 -10.99 -0.04 8.97 16 9 O -0.56 -10.94 13.65 5.55 0.08 -10.87 16 10 N -0.60 -10.35 2.41 -173.03 -0.42 -10.77 16 11 C 0.08 1.41 4.06 -3.94 -0.02 1.39 16 12 C -0.13 -2.67 4.82 -26.83 -0.13 -2.80 16 13 C 0.05 1.15 2.07 -91.73 -0.19 0.96 16 14 C -0.51 -13.44 8.56 -34.44 -0.29 -13.73 16 15 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 16 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 17 N -0.89 -24.07 11.30 55.43 0.63 -23.45 16 18 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C -0.12 -2.50 5.30 -26.61 -0.14 -2.64 16 23 C 0.11 2.04 6.42 -3.71 -0.02 2.02 16 24 H 0.06 0.85 7.32 -51.93 -0.38 0.47 16 25 H 0.05 0.60 7.97 -51.93 -0.41 0.19 16 26 H 0.08 1.32 4.75 -51.93 -0.25 1.08 16 27 H 0.07 0.85 5.96 -51.93 -0.31 0.54 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.50 8.06 -51.92 -0.42 0.08 16 31 H 0.09 1.13 4.48 -51.93 -0.23 0.90 16 32 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.20 4.18 -51.93 -0.22 0.98 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 37 H 0.06 0.85 6.19 -51.93 -0.32 0.53 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 1.40 2.54 -51.93 -0.13 1.26 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.10 2.46 6.03 -51.93 -0.31 2.15 16 42 H 0.04 0.86 7.69 -51.93 -0.40 0.47 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 45 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 46 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.08 1.40 7.04 -51.93 -0.37 1.04 16 LS Contribution 343.42 15.07 5.18 5.18 Total: -1.00 -27.72 343.42 -8.06 -35.78 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -8.36 Total: 3.32 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -0.14 Total: -14.82 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: 0.21 Total: -34.22 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.08 Total: -10.87 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.72 -8.06 -35.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543832905.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.388 kcal (2) G-P(sol) polarization free energy of solvation -27.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds