Wall clock time and date at job start Tue Mar 31 2020 06:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47042 * 2 1 4 4 C 1.53007 * 109.47158 * 59.71780 * 3 2 1 5 5 C 1.53001 * 109.46826 * 65.45760 * 4 3 2 6 6 C 1.52999 * 109.47278 * 299.72238 * 3 2 1 7 7 H 1.09000 * 109.47645 * 59.99441 * 6 3 2 8 8 C 1.52998 * 109.47278 * 179.97438 * 6 3 2 9 9 C 1.50706 * 109.46816 * 299.99817 * 6 3 2 10 10 O 1.21287 * 119.99795 * 329.04788 * 9 6 3 11 11 N 1.34777 * 119.99784 * 149.04706 * 9 6 3 12 12 C 1.46918 * 120.63306 * 4.87952 * 11 9 6 13 13 C 1.53629 * 108.54263 * 126.36657 * 12 11 9 14 14 C 1.53043 * 109.23810 * 54.85951 * 13 12 11 15 15 C 1.50700 * 109.44829 * 178.49538 * 14 13 12 16 16 H 1.08006 * 119.99851 * 120.06249 * 15 14 13 17 17 C 1.37874 * 120.00210 * 300.06212 * 15 14 13 18 18 N 1.31510 * 120.00026 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00264 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47046 * 59.99578 * 19 17 15 21 21 H 1.48501 * 109.47484 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46975 * 300.00275 * 19 17 15 23 23 C 1.53038 * 109.53697 * 298.50976 * 14 13 12 24 24 C 1.46923 * 120.62723 * 185.16455 * 11 9 6 25 25 H 1.09002 * 109.46877 * 58.04729 * 1 2 3 26 26 H 1.09001 * 109.47442 * 178.04053 * 1 2 3 27 27 H 1.08994 * 109.47540 * 298.04567 * 1 2 3 28 28 H 1.09001 * 109.46842 * 119.99907 * 2 1 3 29 29 H 1.08996 * 109.47270 * 239.99915 * 2 1 3 30 30 H 1.08996 * 109.47616 * 179.71741 * 3 2 1 31 31 H 1.08998 * 109.47204 * 185.45491 * 4 3 2 32 32 H 1.08997 * 109.46990 * 305.45982 * 4 3 2 33 33 H 1.09001 * 109.46763 * 182.79087 * 5 4 3 34 34 H 1.08990 * 109.47220 * 302.79318 * 5 4 3 35 35 H 1.08999 * 109.47025 * 62.79549 * 5 4 3 36 36 H 1.09005 * 109.47017 * 172.55635 * 8 6 3 37 37 H 1.08992 * 109.47493 * 292.55931 * 8 6 3 38 38 H 1.09004 * 109.47234 * 52.56437 * 8 6 3 39 39 H 1.09000 * 109.59172 * 246.20456 * 12 11 9 40 40 H 1.09008 * 109.58749 * 6.63327 * 12 11 9 41 41 H 1.08998 * 109.63659 * 294.87045 * 13 12 11 42 42 H 1.08996 * 109.43131 * 174.72288 * 13 12 11 43 43 H 1.09000 * 109.46067 * 58.53240 * 14 13 12 44 44 H 0.97007 * 120.00620 * 179.97438 * 18 17 15 45 45 H 1.08996 * 109.49904 * 301.41259 * 23 14 13 46 46 H 1.09000 * 109.49470 * 181.31566 * 23 14 13 47 47 H 1.09007 * 109.58986 * 353.36828 * 24 11 9 48 48 H 1.08997 * 109.59080 * 113.65633 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5241 2.1658 1.2457 5 6 2.1373 1.5301 2.4951 6 6 1.5357 2.1617 -1.2527 7 1 0.4457 2.1617 -1.2578 8 6 2.0451 3.6044 -1.2524 9 6 2.0438 1.4493 -2.4797 10 8 3.1115 0.8749 -2.4489 11 7 1.3115 1.4505 -3.6112 12 6 0.0688 2.2295 -3.6979 13 6 0.1495 3.1425 -4.9308 14 6 0.4461 2.2930 -6.1688 15 6 0.4897 3.1794 -7.3868 16 1 1.3904 3.2383 -7.9799 17 6 -0.6202 3.9152 -7.7441 18 7 -1.7168 3.8439 -7.0217 19 14 -0.5660 5.0144 -9.2535 20 1 -0.2793 4.1909 -10.4554 21 1 -1.8763 5.6933 -9.4189 22 1 0.5012 6.0334 -9.0856 23 6 1.7968 1.5940 -5.9983 24 6 1.7377 0.6680 -4.7794 25 1 -0.3633 0.5439 -0.8720 26 1 -0.3634 -1.0271 -0.0351 27 1 -0.3634 0.4831 0.9069 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 3.1299 1.4426 0.0051 31 1 1.8057 3.2177 1.1978 32 1 0.4384 2.0820 1.2910 33 1 1.7320 2.0127 3.3844 34 1 1.8972 0.4672 2.5171 35 1 3.2196 1.6578 2.4738 36 1 1.7989 4.0769 -2.2034 37 1 1.5732 4.1562 -0.4396 38 1 3.1264 3.6079 -1.1142 39 1 -0.7804 1.5531 -3.7956 40 1 -0.0458 2.8359 -2.7994 41 1 0.9451 3.8747 -4.7929 42 1 -0.8015 3.6583 -5.0629 43 1 -0.3370 1.5449 -6.2920 44 1 -2.4977 4.3618 -7.2728 45 1 2.5768 2.3408 -5.8504 46 1 2.0181 1.0078 -6.8902 47 1 2.7246 0.2436 -4.5948 48 1 1.0232 -0.1347 -4.9620 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543833207.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:53 Heat of formation + Delta-G solvation = -72.498523 kcal Electronic energy + Delta-G solvation = -23851.761450 eV Core-core repulsion = 20712.209474 eV Total energy + Delta-G solvation = -3139.551976 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.20211 -37.70829 -36.38950 -33.54333 -32.40932 -31.32301 -30.91481 -29.95031 -26.38999 -26.31496 -24.14034 -23.37777 -22.66253 -22.05011 -20.02830 -18.91840 -17.88113 -17.05226 -16.18348 -15.68786 -15.46508 -15.03511 -14.57222 -14.10571 -13.98850 -13.67835 -13.18060 -13.03257 -12.93791 -12.80408 -12.64000 -12.37538 -12.20062 -12.01651 -11.83570 -11.68502 -11.46882 -11.38900 -11.25833 -10.96070 -10.92009 -10.67333 -10.45445 -10.38984 -10.32763 -10.17840 -10.08097 -9.63946 -9.20872 -9.16262 -8.89116 -8.38477 -7.95168 -6.04068 -4.10212 3.06628 3.29005 3.33678 3.36912 3.52483 4.40002 4.68374 4.69144 4.81654 5.06279 5.18705 5.24535 5.27819 5.36446 5.40113 5.45549 5.49504 5.64937 5.69020 5.74451 5.80395 5.86104 5.90969 5.93146 5.97704 6.01588 6.07793 6.10100 6.11688 6.16863 6.25291 6.28434 6.31351 6.41067 6.47526 6.52906 6.67200 6.91790 7.04792 7.16583 7.28257 7.65664 7.91365 7.98884 8.03659 8.39498 8.65125 8.92901 9.54861 11.01300 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029647 B = 0.004037 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.204351 B = 6934.392826 C = 7170.316027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.123 4.123 3 C -0.069 4.069 4 C -0.124 4.124 5 C -0.152 4.152 6 C -0.109 4.109 7 H 0.093 0.907 8 C -0.143 4.143 9 C 0.519 3.481 10 O -0.560 6.560 11 N -0.600 5.600 12 C 0.101 3.899 13 C -0.122 4.122 14 C 0.049 3.951 15 C -0.513 4.513 16 H 0.054 0.946 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.278 1.278 23 C -0.123 4.123 24 C 0.111 3.889 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.038 0.962 42 H 0.104 0.896 43 H 0.027 0.973 44 H 0.261 0.739 45 H 0.051 0.949 46 H 0.058 0.942 47 H 0.077 0.923 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.715 -3.533 15.491 16.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.160 4.160 3 C -0.087 4.087 4 C -0.162 4.162 5 C -0.209 4.209 6 C -0.130 4.130 7 H 0.111 0.889 8 C -0.201 4.201 9 C 0.307 3.693 10 O -0.439 6.439 11 N -0.332 5.332 12 C -0.021 4.021 13 C -0.161 4.161 14 C 0.031 3.969 15 C -0.551 4.551 16 H 0.072 0.928 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.161 4.161 24 C -0.011 4.011 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.057 0.943 42 H 0.122 0.878 43 H 0.045 0.955 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.095 0.905 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.075 -3.762 15.489 16.233 hybrid contribution -0.170 0.699 -0.978 1.215 sum 2.905 -3.063 14.510 15.112 Atomic orbital electron populations 1.21902 0.96199 1.01417 1.01845 1.21595 0.95746 0.96421 1.02286 1.21026 1.01019 0.94380 0.92314 1.21696 1.00762 0.99707 0.93998 1.21801 1.00808 1.01011 0.97308 1.21435 1.02012 0.96359 0.93213 0.88873 1.21783 1.01717 0.93883 1.02694 1.20509 0.84287 0.80221 0.84240 1.90611 1.22262 1.46589 1.84442 1.48250 1.24798 1.47421 1.12762 1.22168 0.84831 0.94471 1.00649 1.22084 1.03836 0.97536 0.92597 1.18623 0.90954 0.94201 0.93141 1.21177 0.98370 1.25564 1.09961 0.92793 1.24948 0.95446 0.96799 0.96706 1.69823 1.02718 1.41802 1.38757 0.86681 0.77113 0.80830 0.83514 1.20319 1.21299 1.20344 1.21994 1.01121 0.97992 0.94975 1.21668 1.00021 0.93809 0.85620 0.92500 0.93125 0.92529 0.91952 0.91487 0.90250 0.91652 0.91604 0.93078 0.92524 0.92870 0.91781 0.91513 0.92104 0.92138 0.91286 0.94276 0.87835 0.95517 0.92936 0.93018 0.92287 0.90480 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.21 37.16 0.34 -1.35 16 2 C -0.12 -1.48 5.20 -26.73 -0.14 -1.62 16 3 C -0.07 -0.82 1.40 -90.62 -0.13 -0.95 16 4 C -0.12 -1.19 4.98 -26.73 -0.13 -1.32 16 5 C -0.15 -1.31 9.74 37.16 0.36 -0.94 16 6 C -0.11 -1.47 1.13 -91.77 -0.10 -1.57 16 7 H 0.09 1.18 4.63 -51.93 -0.24 0.94 16 8 C -0.14 -1.80 8.41 37.16 0.31 -1.48 16 9 C 0.52 8.95 5.78 -10.98 -0.06 8.89 16 10 O -0.56 -11.17 14.85 5.55 0.08 -11.09 16 11 N -0.60 -10.77 2.97 -172.50 -0.51 -11.28 16 12 C 0.10 1.78 6.18 -3.49 -0.02 1.76 16 13 C -0.12 -2.66 5.17 -26.38 -0.14 -2.80 16 14 C 0.05 1.17 2.06 -91.73 -0.19 0.98 16 15 C -0.51 -13.64 8.56 -34.44 -0.29 -13.93 16 16 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 17 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 18 N -0.89 -24.25 11.30 55.43 0.63 -23.62 16 19 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 C -0.12 -2.54 5.30 -26.61 -0.14 -2.68 16 24 C 0.11 2.06 6.44 -3.71 -0.02 2.04 16 25 H 0.06 0.67 6.33 -51.93 -0.33 0.34 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.53 6.41 -51.93 -0.33 0.20 16 28 H 0.06 0.67 6.53 -51.93 -0.34 0.33 16 29 H 0.07 0.98 6.67 -51.93 -0.35 0.63 16 30 H 0.08 1.08 7.85 -51.93 -0.41 0.67 16 31 H 0.06 0.60 6.32 -51.93 -0.33 0.27 16 32 H 0.07 0.60 6.19 -51.93 -0.32 0.28 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.48 6.46 -51.93 -0.34 0.15 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.89 7.89 -51.93 -0.41 0.48 16 37 H 0.07 0.68 6.72 -51.93 -0.35 0.33 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.07 1.05 5.27 -51.92 -0.27 0.78 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.10 2.51 6.03 -51.93 -0.31 2.19 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.26 6.82 8.31 -40.82 -0.34 6.49 16 45 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.08 1.44 7.00 -51.92 -0.36 1.08 16 48 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 352.62 15.07 5.31 5.31 Total: -1.00 -28.25 352.62 -8.42 -36.67 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -8.46 Total: 1.66 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -0.45 Total: -13.42 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.11 Total: -34.91 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.08 Total: -11.09 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.25 -8.42 -36.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543833207.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.825 kcal (2) G-P(sol) polarization free energy of solvation -28.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds